Wall clock time and date at job start Wed Apr 1 2020 00:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46817 * 2 1 4 4 C 1.52997 * 109.46928 * 119.99421 * 2 1 3 5 5 C 1.50698 * 109.47399 * 295.00610 * 4 2 1 6 6 C 1.38314 * 119.88456 * 89.99783 * 5 4 2 7 7 C 1.38030 * 120.11948 * 180.25408 * 6 5 4 8 8 C 1.39305 * 119.87920 * 359.51492 * 7 6 5 9 9 C 1.48455 * 120.11614 * 180.22913 * 8 7 6 10 10 N 1.34048 * 126.67457 * 180.29756 * 9 8 7 11 11 N 1.28992 * 107.26837 * 180.02562 * 10 9 8 12 12 N 1.28726 * 108.94143 * 0.02562 * 11 10 9 13 13 H 0.97004 * 125.33982 * 179.97438 * 12 11 10 14 14 N 1.28870 * 109.32052 * 359.72515 * 12 11 10 15 15 C 1.39299 * 119.76582 * 0.50929 * 8 7 6 16 16 C 1.38029 * 119.88115 * 359.72107 * 15 8 7 17 17 C 1.50694 * 109.47381 * 240.00150 * 2 1 3 18 18 O 1.21282 * 119.99671 * 271.79778 * 17 2 1 19 19 N 1.34778 * 120.00270 * 91.80753 * 17 2 1 20 20 C 1.47062 * 136.05741 * 4.88257 * 19 17 2 21 21 C 1.53238 * 88.08177 * 207.21071 * 20 19 17 22 22 C 1.50700 * 114.32353 * 220.47259 * 21 20 19 23 23 H 1.07995 * 120.00236 * 93.75530 * 22 21 20 24 24 C 1.37880 * 119.99772 * 273.75631 * 22 21 20 25 25 N 1.31510 * 120.00125 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99829 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47413 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47022 * 120.00312 * 26 24 22 29 29 H 1.48500 * 109.47130 * 239.99699 * 26 24 22 30 30 C 1.47069 * 136.05367 * 185.26073 * 19 17 2 31 31 H 1.09002 * 109.46667 * 186.36588 * 1 2 3 32 32 H 1.08995 * 109.47680 * 306.37306 * 1 2 3 33 33 H 1.09002 * 109.47115 * 66.37583 * 1 2 3 34 34 H 1.09003 * 109.46905 * 175.00205 * 4 2 1 35 35 H 1.09000 * 109.46902 * 55.00499 * 4 2 1 36 36 H 1.08007 * 119.93900 * 359.97438 * 6 5 4 37 37 H 1.07995 * 120.05938 * 179.75420 * 7 6 5 38 38 H 1.07998 * 120.06072 * 179.74860 * 15 8 7 39 39 H 1.08000 * 119.94319 * 180.02562 * 16 15 8 40 40 H 1.08998 * 113.46537 * 321.93714 * 20 19 17 41 41 H 1.08990 * 113.46967 * 92.37864 * 20 19 17 42 42 H 1.08993 * 114.02306 * 87.71837 * 21 20 19 43 43 H 0.97004 * 119.99923 * 179.97438 * 25 24 22 44 44 H 1.09000 * 113.46629 * 267.61189 * 30 19 17 45 45 H 1.08999 * 113.47324 * 38.05991 * 30 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0572 2.4766 6 6 0.4341 -0.2070 3.0981 7 6 0.0616 0.5065 4.2194 8 6 0.9085 1.4873 4.7309 9 6 0.5154 2.2543 5.9396 10 7 1.2216 3.2246 6.5369 11 7 0.5337 3.6310 7.5495 12 7 -0.5625 2.9586 7.6070 13 1 -1.2550 3.0707 8.2769 14 7 -0.5979 2.1168 6.6318 15 6 2.1228 1.7497 4.1008 16 6 2.4834 1.0336 2.9772 17 6 2.0324 -0.7103 -1.2304 18 8 2.2035 -1.9109 -1.2101 19 7 2.2918 -0.0116 -2.3533 20 6 2.2990 1.4074 -2.7396 21 6 1.9957 0.9650 -4.1751 22 6 2.7448 1.7338 -5.2329 23 1 3.6830 1.3566 -5.6119 24 6 2.2321 2.9188 -5.7168 25 7 1.0898 3.3784 -5.2548 26 14 3.1610 3.8721 -7.0275 27 1 4.4098 3.1475 -7.3751 28 1 2.3121 4.0036 -8.2388 29 1 3.4991 5.2227 -6.5110 30 6 2.6857 -0.3331 -3.7333 31 1 -0.3633 -1.0214 0.1139 32 1 -0.3634 0.6094 0.8274 33 1 -0.3633 0.4118 -0.9416 34 1 3.1263 -0.7993 1.2057 35 1 1.6054 -1.7197 1.2952 36 1 -0.2202 -0.9699 2.7027 37 1 -0.8828 0.3022 4.7016 38 1 2.7811 2.5118 4.4909 39 1 3.4248 1.2359 2.4881 40 1 1.4937 1.9849 -2.2857 41 1 3.2735 1.8826 -2.6285 42 1 0.9329 0.8554 -4.3904 43 1 0.7294 4.2122 -5.5950 44 1 3.7644 -0.3261 -3.8896 45 1 2.2086 -1.2324 -4.1227 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589893850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:56 Heat of formation + Delta-G solvation = 117.911099 kcal Electronic energy + Delta-G solvation = -27939.228540 eV Core-core repulsion = 23959.721956 eV Total energy + Delta-G solvation = -3979.506584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.46052 -41.34199 -40.38085 -38.91203 -36.29537 -35.26512 -34.63589 -34.26517 -31.96388 -31.83687 -30.63465 -28.06362 -27.22673 -26.68493 -25.78507 -25.16554 -23.66073 -23.32098 -22.13908 -21.33819 -20.19032 -19.50720 -18.79157 -18.14303 -18.06691 -17.65388 -16.86428 -16.56578 -16.40237 -16.12535 -16.02585 -15.29200 -15.12908 -14.83251 -14.55797 -14.31836 -14.17912 -14.04409 -13.87037 -13.54911 -13.29489 -13.24347 -13.10326 -13.07168 -12.76087 -12.59167 -12.46879 -12.35877 -12.34775 -12.18076 -12.12787 -12.05637 -11.76807 -11.72741 -11.31334 -11.03709 -10.64371 -10.47016 -9.88438 -9.53623 -9.48102 -8.15414 -6.26011 -0.30217 0.17193 0.46649 1.29555 1.42884 1.46904 1.50811 1.60868 1.66258 2.04659 2.47530 2.67909 2.82632 3.15059 3.17231 3.44809 3.82117 3.95141 4.00823 4.07951 4.13428 4.22805 4.27971 4.39673 4.41114 4.44411 4.50882 4.54654 4.57819 4.72982 4.78738 4.81559 4.85677 4.86657 4.93888 4.99981 5.09472 5.13835 5.22801 5.25156 5.40418 5.46548 5.61313 5.61597 5.68410 5.83370 5.94777 6.25366 6.82809 6.95162 7.11344 7.20255 7.44075 8.94590 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014455 B = 0.002069 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.518467 B =13532.549540 C =14784.576854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 H 0.095 0.905 4 C -0.058 4.058 5 C -0.056 4.056 6 C -0.115 4.115 7 C -0.076 4.076 8 C -0.039 4.039 9 C 0.212 3.788 10 N -0.296 5.296 11 N -0.058 5.058 12 N -0.201 5.201 13 H 0.494 0.506 14 N -0.296 5.296 15 C -0.077 4.077 16 C -0.120 4.120 17 C 0.533 3.467 18 O -0.594 6.594 19 N -0.646 5.646 20 C 0.115 3.885 21 C 0.022 3.978 22 C -0.526 4.526 23 H 0.066 0.934 24 C 0.021 3.979 25 N -0.917 5.917 26 Si 0.957 3.043 27 H -0.264 1.264 28 H -0.284 1.284 29 H -0.280 1.280 30 C 0.103 3.897 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.039 0.961 43 H 0.264 0.736 44 H 0.082 0.918 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.019 -1.724 24.491 24.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 H 0.113 0.887 4 C -0.095 4.095 5 C -0.057 4.057 6 C -0.132 4.132 7 C -0.096 4.096 8 C -0.043 4.043 9 C -0.068 4.068 10 N -0.168 5.168 11 N -0.053 5.053 12 N -0.052 5.052 13 H 0.353 0.647 14 N -0.148 5.148 15 C -0.097 4.097 16 C -0.138 4.138 17 C 0.325 3.675 18 O -0.476 6.476 19 N -0.378 5.378 20 C -0.007 4.007 21 C 0.003 3.997 22 C -0.564 4.564 23 H 0.084 0.916 24 C -0.179 4.179 25 N -0.555 5.555 26 Si 0.783 3.217 27 H -0.189 1.189 28 H -0.210 1.210 29 H -0.206 1.206 30 C -0.020 4.020 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.022 -1.837 25.185 25.571 hybrid contribution -0.144 0.450 -0.781 0.913 sum -4.167 -1.388 24.404 24.796 Atomic orbital electron populations 1.21748 0.91533 1.03212 1.02797 1.21153 0.98735 1.00425 0.90721 0.88711 1.20409 1.01648 0.98433 0.89061 1.19996 0.94651 0.95669 0.95405 1.21208 0.96247 1.00512 0.95269 1.21257 0.99232 0.93554 0.95530 1.17382 0.96921 0.98015 0.91955 1.23881 0.88260 0.96203 0.98424 1.76079 1.25045 1.12006 1.03719 1.78857 0.94640 1.16927 1.14898 1.47792 1.16502 1.20500 1.20376 0.64674 1.74893 1.22826 1.15552 1.01548 1.21222 0.94938 0.98869 0.94712 1.21182 1.00740 0.95710 0.96149 1.20854 0.76568 0.86654 0.83427 1.90608 1.56447 1.16329 1.84265 1.50066 1.66054 1.11391 1.10329 1.23265 1.00683 0.80772 0.96029 1.20185 0.95950 0.91312 0.92293 1.21233 1.07083 1.06289 1.21827 0.91618 1.25745 0.95478 0.98441 0.98253 1.70057 1.19858 1.21608 1.44023 0.85519 0.78906 0.78475 0.78829 1.18855 1.21038 1.20585 1.23218 1.00062 0.99430 0.79253 0.91468 0.89270 0.93567 0.90664 0.89716 0.83530 0.83737 0.84405 0.84113 0.92099 0.90145 0.94272 0.92676 0.90028 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.53 71.98 0.61 -2.70 16 2 C -0.09 -2.43 2.61 -11.54 -0.03 -2.46 16 3 H 0.09 2.50 7.84 -2.38 -0.02 2.48 16 4 C -0.06 -1.32 4.37 29.85 0.13 -1.19 16 5 C -0.06 -1.09 4.72 -19.83 -0.09 -1.18 16 6 C -0.11 -1.94 8.11 22.24 0.18 -1.76 16 7 C -0.08 -1.28 9.70 22.48 0.22 -1.07 16 8 C -0.04 -0.77 5.88 -20.04 -0.12 -0.89 16 9 C 0.21 4.30 7.94 137.38 1.09 5.39 16 10 N -0.30 -6.51 12.23 -52.18 -0.64 -7.15 16 11 N -0.06 -1.03 13.47 37.02 0.50 -0.53 16 12 N -0.20 -2.29 7.90 37.02 0.29 -2.00 16 13 H 0.49 0.55 8.96 -347.53 -3.12 -2.57 16 14 N -0.30 -4.86 12.08 -52.13 -0.63 -5.49 16 15 C -0.08 -1.48 9.70 22.48 0.22 -1.26 16 16 C -0.12 -2.25 9.68 22.24 0.22 -2.03 16 17 C 0.53 19.59 7.11 87.65 0.62 20.21 16 18 O -0.59 -25.17 17.09 -3.04 -0.05 -25.22 16 19 N -0.65 -25.41 3.69 -858.83 -3.17 -28.58 16 20 C 0.12 4.68 7.75 83.10 0.64 5.32 16 21 C 0.02 1.02 3.77 -11.29 -0.04 0.98 16 22 C -0.53 -26.37 8.82 25.60 0.23 -26.15 16 23 H 0.07 3.20 7.81 -2.91 -0.02 3.18 16 24 C 0.02 1.08 5.46 84.66 0.46 1.54 16 25 N -0.92 -49.57 13.26 21.45 0.28 -49.29 16 26 Si 0.96 40.48 29.54 68.60 2.03 42.51 16 27 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 28 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 29 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 30 C 0.10 4.24 8.19 83.18 0.68 4.93 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.09 1.79 6.69 -2.39 -0.02 1.78 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 35 H 0.08 1.98 7.96 -2.39 -0.02 1.96 16 36 H 0.15 2.02 8.03 -2.91 -0.02 1.99 16 37 H 0.14 2.02 7.88 -2.91 -0.02 1.99 16 38 H 0.14 2.49 7.89 -2.91 -0.02 2.47 16 39 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.08 3.18 8.10 -2.39 -0.02 3.16 16 42 H 0.04 2.03 8.11 -2.39 -0.02 2.01 16 43 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 44 H 0.08 3.21 8.10 -2.39 -0.02 3.19 16 45 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -65.97 387.32 1.54 -64.43 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -2.09 Total: 13.63 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 5.02 Total: -2.31 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -3.36 Total: -93.04 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.05 Total: -25.22 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -65.97 1.54 -64.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589893850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.339 kcal (2) G-P(sol) polarization free energy of solvation -65.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds