Wall clock time and date at job start Wed Apr 1 2020 01:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46510 * 109.47473 * 2 1 4 4 C 1.46497 * 119.99846 * 275.96163 * 3 2 1 5 5 C 1.50701 * 109.46664 * 269.99243 * 4 3 2 6 6 H 1.08002 * 120.00209 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99998 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00045 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99689 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47316 * 90.00322 * 9 7 5 11 11 H 1.48500 * 109.46855 * 209.99950 * 9 7 5 12 12 H 1.48497 * 109.47423 * 329.99987 * 9 7 5 13 13 C 1.34773 * 119.99566 * 95.95324 * 3 2 1 14 14 O 1.21286 * 119.99730 * 182.83173 * 13 3 2 15 15 C 1.50698 * 120.00610 * 3.10239 * 13 3 2 16 16 C 1.50699 * 115.55183 * 291.72354 * 15 13 3 17 17 C 1.38338 * 119.94226 * 118.25329 * 16 15 13 18 18 C 1.38288 * 120.23895 * 180.02562 * 17 16 15 19 19 C 1.38053 * 120.11818 * 0.02562 * 18 17 16 20 20 C 1.39284 * 119.87742 * 359.97438 * 19 18 17 21 21 C 1.48466 * 120.11399 * 179.97438 * 20 19 18 22 22 N 1.34042 * 126.66904 * 179.68328 * 21 20 19 23 23 N 1.28994 * 107.26597 * 179.89004 * 22 21 20 24 24 N 1.28730 * 108.94171 * 0.37411 * 23 22 21 25 25 H 0.96995 * 125.34381 * 179.79580 * 24 23 22 26 26 N 1.28874 * 109.31525 * 359.76092 * 24 23 22 27 27 C 1.38010 * 119.94112 * 297.98489 * 16 15 13 28 28 C 1.53002 * 117.50115 * 146.04993 * 15 13 3 29 29 C 1.52999 * 117.49601 * 77.38960 * 15 13 3 30 30 H 1.08991 * 109.47508 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46792 * 299.99977 * 1 2 3 32 32 H 1.09003 * 109.46897 * 59.99474 * 1 2 3 33 33 H 1.09000 * 109.47259 * 240.00578 * 2 1 3 34 34 H 1.09001 * 109.47320 * 119.99892 * 2 1 3 35 35 H 1.08997 * 109.47689 * 29.99502 * 4 3 2 36 36 H 1.09002 * 109.47234 * 149.99591 * 4 3 2 37 37 H 0.97001 * 119.99935 * 179.97438 * 8 7 5 38 38 H 1.08006 * 119.88080 * 0.02562 * 17 16 15 39 39 H 1.08005 * 119.94625 * 180.02562 * 18 17 16 40 40 H 1.08000 * 120.06249 * 179.97438 * 19 18 17 41 41 H 1.07994 * 120.05470 * 359.97438 * 27 16 15 42 42 H 1.09006 * 117.49573 * 0.02562 * 28 15 13 43 43 H 1.08987 * 117.49938 * 145.02512 * 28 15 13 44 44 H 1.09002 * 117.50182 * 214.97942 * 29 15 13 45 45 H 1.09010 * 117.49859 * 359.97438 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1383 2.1158 -1.2619 5 6 3.5119 1.8966 -1.8419 6 1 4.2240 1.2722 -1.3228 7 6 3.8594 2.4931 -3.0355 8 7 5.0578 2.3014 -3.5419 9 14 2.6279 3.5735 -3.9330 10 1 2.7749 4.9781 -3.4742 11 1 2.8793 3.5014 -5.3948 12 1 1.2506 3.0998 -3.6437 13 6 2.3571 1.9761 1.1609 14 8 2.7125 3.1357 1.1670 15 6 2.3003 1.1989 2.4507 16 6 0.9197 0.8184 2.9200 17 6 0.5768 -0.5158 3.0469 18 6 -0.6885 -0.8718 3.4765 19 6 -1.6169 0.1036 3.7806 20 6 -1.2769 1.4484 3.6546 21 6 -2.2713 2.5018 3.9796 22 7 -2.0845 3.8274 3.9115 23 7 -3.1884 4.3887 4.2727 24 7 -4.0450 3.4743 4.5680 25 1 -4.9526 3.6326 4.8713 26 7 -3.5077 2.3155 4.3967 27 6 0.0014 1.8017 3.2277 28 6 3.3444 1.5268 3.5199 29 6 3.4384 0.2165 2.7342 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.3859 1.7571 -1.9641 36 1 1.9867 3.1796 -1.0789 37 1 5.3022 2.7208 -4.3818 38 1 1.2999 -1.2821 2.8097 39 1 -0.9510 -1.9149 3.5744 40 1 -2.6049 -0.1754 4.1157 41 1 0.2717 2.8429 3.1327 42 1 4.0723 2.3052 3.2905 43 1 3.0329 1.4670 4.5626 44 1 3.1888 -0.7048 3.2605 45 1 4.2282 0.1321 1.9875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590690725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:32 Heat of formation + Delta-G solvation = 149.366276 kcal Electronic energy + Delta-G solvation = -29934.133625 eV Core-core repulsion = 25955.991040 eV Total energy + Delta-G solvation = -3978.142586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.64406 -40.50697 -38.68949 -36.35344 -35.33780 -34.55925 -33.66952 -32.62457 -31.07330 -30.64340 -30.07852 -27.95266 -25.22507 -24.73075 -24.29270 -23.00773 -22.62160 -22.46503 -21.58938 -20.59001 -19.38793 -18.18546 -17.33274 -17.25530 -16.87049 -16.17084 -15.62737 -15.55160 -15.23512 -14.83996 -14.30313 -14.24760 -13.95631 -13.68054 -13.58178 -13.31938 -12.90761 -12.64432 -12.53440 -12.43108 -12.12626 -11.84144 -11.70426 -11.58718 -11.49990 -11.42695 -11.33271 -11.21365 -11.13026 -10.86803 -10.72048 -10.52317 -10.42058 -10.23487 -10.07539 -9.50872 -9.16029 -8.89400 -8.59939 -8.55968 -7.66248 -6.06510 -4.04797 0.52632 1.00859 1.20526 2.01598 2.18292 3.24157 3.32030 3.37909 3.40779 3.45480 3.58373 3.67297 3.96780 4.08960 4.42583 4.53910 4.79060 4.88123 4.93073 4.96300 5.01036 5.14546 5.24432 5.27495 5.29712 5.42206 5.43802 5.59470 5.68735 5.70805 5.77250 5.84036 5.92004 6.04433 6.09190 6.12885 6.24766 6.25657 6.27163 6.30783 6.43760 6.53295 6.71743 6.77485 7.00552 7.40597 7.64252 7.95366 8.30858 8.49532 8.94921 9.02264 9.54482 11.06817 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.003562 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.001275 B = 7858.665539 C = 8826.908596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 N -0.582 5.582 4 C 0.216 3.784 5 C -0.527 4.527 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.874 3.126 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.548 3.452 14 O -0.534 6.534 15 C -0.121 4.121 16 C -0.033 4.033 17 C -0.087 4.087 18 C -0.120 4.120 19 C -0.083 4.083 20 C -0.020 4.020 21 C 0.224 3.776 22 N -0.262 5.262 23 N -0.049 5.049 24 N -0.231 5.231 25 H 0.474 0.526 26 N -0.297 5.297 27 C -0.061 4.061 28 C -0.135 4.135 29 C -0.157 4.157 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.118 -8.164 18.451 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.313 5.313 4 C 0.095 3.905 5 C -0.565 4.565 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.701 3.299 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.334 3.666 14 O -0.411 6.411 15 C -0.125 4.125 16 C -0.034 4.034 17 C -0.106 4.106 18 C -0.138 4.138 19 C -0.103 4.103 20 C -0.024 4.024 21 C -0.056 4.056 22 N -0.135 5.135 23 N -0.044 5.044 24 N -0.076 5.076 25 H 0.328 0.672 26 N -0.149 5.149 27 C -0.081 4.081 28 C -0.173 4.173 29 C -0.194 4.194 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.156 0.844 42 H 0.126 0.874 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.034 -6.845 18.320 25.935 hybrid contribution -1.101 0.238 -0.574 1.264 sum -18.135 -6.607 17.746 26.219 Atomic orbital electron populations 1.22292 0.96814 1.01436 1.02444 1.21473 0.93518 0.83806 1.02885 1.47801 1.62796 1.13512 1.07155 1.19657 0.97710 0.92811 0.80308 1.21321 0.97657 1.31249 1.06317 0.90727 1.24835 0.95153 0.95915 0.97010 1.69891 1.19247 1.44389 1.20120 0.86877 0.82118 0.81885 0.79013 1.19858 1.21090 1.19075 1.19056 0.77784 0.86473 0.83303 1.90677 1.47314 1.16830 1.86239 1.20128 0.89442 1.05630 0.97274 1.18690 0.93053 0.92842 0.98789 1.21247 0.96670 0.95495 0.97181 1.20998 0.93137 0.99402 1.00263 1.21115 0.99974 0.90901 0.98317 1.17142 0.90941 0.89457 1.04825 1.23715 0.90380 0.91571 0.99888 1.76194 1.14791 1.05439 1.17059 1.78960 0.94688 1.18421 1.12372 1.47728 1.16170 1.00859 1.42870 0.67180 1.74884 1.10236 1.08598 1.21194 1.21055 0.90940 1.00847 0.95230 1.23039 0.99481 0.99075 0.95663 1.23166 0.98920 0.94005 1.03317 0.92182 0.92458 0.92601 0.90266 0.90853 0.95256 0.94568 0.92591 0.85058 0.85064 0.85127 0.84410 0.87351 0.88132 0.87876 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.37 37.15 0.35 -2.04 16 2 C 0.11 1.72 5.62 -4.04 -0.02 1.70 16 3 N -0.58 -12.15 2.46 -175.06 -0.43 -12.58 16 4 C 0.22 5.38 4.27 -5.19 -0.02 5.35 16 5 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 6 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 9 Si 0.87 21.95 27.47 -169.99 -4.67 17.28 16 10 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.33 6.54 56.52 0.37 -5.97 16 13 C 0.55 11.38 6.79 -10.99 -0.07 11.30 16 14 O -0.53 -13.43 16.32 5.55 0.09 -13.34 16 15 C -0.12 -1.83 1.03 -156.81 -0.16 -1.99 16 16 C -0.03 -0.42 3.02 -104.67 -0.32 -0.74 16 17 C -0.09 -0.85 6.83 -39.53 -0.27 -1.12 16 18 C -0.12 -1.01 10.03 -39.63 -0.40 -1.41 16 19 C -0.08 -0.80 9.70 -39.26 -0.38 -1.18 16 20 C -0.02 -0.25 5.88 -104.89 -0.62 -0.86 16 21 C 0.22 2.84 7.94 -156.31 -1.24 1.60 16 22 N -0.26 -3.71 12.23 32.15 0.39 -3.32 16 23 N -0.05 -0.57 13.47 60.35 0.81 0.24 16 24 N -0.23 -1.87 7.90 60.35 0.48 -1.40 16 25 H 0.47 1.38 8.96 -340.37 -3.05 -1.67 16 26 N -0.30 -3.08 12.08 32.17 0.39 -2.69 16 27 C -0.06 -0.83 8.86 -39.26 -0.35 -1.18 16 28 C -0.14 -1.82 9.77 -26.69 -0.26 -2.08 16 29 C -0.16 -1.96 8.46 -26.69 -0.23 -2.18 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.81 5.50 -51.93 -0.29 0.52 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 34 H 0.07 0.99 4.24 -51.93 -0.22 0.77 16 35 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 36 H 0.04 0.98 6.81 -51.93 -0.35 0.62 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.13 1.06 6.30 -52.48 -0.33 0.73 16 39 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.13 1.06 7.88 -52.49 -0.41 0.64 16 41 H 0.14 2.18 7.89 -52.49 -0.41 1.77 16 42 H 0.11 1.65 8.04 -51.93 -0.42 1.23 16 43 H 0.10 1.12 8.14 -51.94 -0.42 0.69 16 44 H 0.10 0.95 6.92 -51.93 -0.36 0.59 16 45 H 0.11 1.50 8.14 -51.92 -0.42 1.08 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -36.82 374.40 -9.29 -46.11 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -8.34 Total: -0.63 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -4.43 Total: -8.32 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 2.41 Total: -46.74 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.82 -9.29 -46.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590690725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.476 kcal (2) G-P(sol) polarization free energy of solvation -36.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds