Wall clock time and date at job start Wed Apr 1 2020 01:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46510 * 109.47473 * 2 1 4 4 C 1.46497 * 119.99846 * 275.96163 * 3 2 1 5 5 C 1.50701 * 109.46664 * 269.99243 * 4 3 2 6 6 H 1.08002 * 120.00209 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99998 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00045 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99689 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47316 * 90.00322 * 9 7 5 11 11 H 1.48500 * 109.46855 * 209.99950 * 9 7 5 12 12 H 1.48497 * 109.47423 * 329.99987 * 9 7 5 13 13 C 1.34773 * 119.99566 * 95.95324 * 3 2 1 14 14 O 1.21286 * 119.99730 * 182.83173 * 13 3 2 15 15 C 1.50698 * 120.00610 * 3.10239 * 13 3 2 16 16 C 1.50699 * 115.55183 * 291.72354 * 15 13 3 17 17 C 1.38338 * 119.94226 * 118.25329 * 16 15 13 18 18 C 1.38288 * 120.23895 * 180.02562 * 17 16 15 19 19 C 1.38053 * 120.11818 * 0.02562 * 18 17 16 20 20 C 1.39284 * 119.87742 * 359.97438 * 19 18 17 21 21 C 1.48466 * 120.11399 * 179.97438 * 20 19 18 22 22 N 1.34042 * 126.66904 * 179.68328 * 21 20 19 23 23 N 1.28994 * 107.26597 * 179.89004 * 22 21 20 24 24 N 1.28730 * 108.94171 * 0.37411 * 23 22 21 25 25 H 0.96995 * 125.34381 * 179.79580 * 24 23 22 26 26 N 1.28874 * 109.31525 * 359.76092 * 24 23 22 27 27 C 1.38010 * 119.94112 * 297.98489 * 16 15 13 28 28 C 1.53002 * 117.50115 * 146.04993 * 15 13 3 29 29 C 1.52999 * 117.49601 * 77.38960 * 15 13 3 30 30 H 1.08991 * 109.47508 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46792 * 299.99977 * 1 2 3 32 32 H 1.09003 * 109.46897 * 59.99474 * 1 2 3 33 33 H 1.09000 * 109.47259 * 240.00578 * 2 1 3 34 34 H 1.09001 * 109.47320 * 119.99892 * 2 1 3 35 35 H 1.08997 * 109.47689 * 29.99502 * 4 3 2 36 36 H 1.09002 * 109.47234 * 149.99591 * 4 3 2 37 37 H 0.97001 * 119.99935 * 179.97438 * 8 7 5 38 38 H 1.08006 * 119.88080 * 0.02562 * 17 16 15 39 39 H 1.08005 * 119.94625 * 180.02562 * 18 17 16 40 40 H 1.08000 * 120.06249 * 179.97438 * 19 18 17 41 41 H 1.07994 * 120.05470 * 359.97438 * 27 16 15 42 42 H 1.09006 * 117.49573 * 0.02562 * 28 15 13 43 43 H 1.08987 * 117.49938 * 145.02512 * 28 15 13 44 44 H 1.09002 * 117.50182 * 214.97942 * 29 15 13 45 45 H 1.09010 * 117.49859 * 359.97438 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1383 2.1158 -1.2619 5 6 3.5119 1.8966 -1.8419 6 1 4.2240 1.2722 -1.3228 7 6 3.8594 2.4931 -3.0355 8 7 5.0578 2.3014 -3.5419 9 14 2.6279 3.5735 -3.9330 10 1 2.7749 4.9781 -3.4742 11 1 2.8793 3.5014 -5.3948 12 1 1.2506 3.0998 -3.6437 13 6 2.3571 1.9761 1.1609 14 8 2.7125 3.1357 1.1670 15 6 2.3003 1.1989 2.4507 16 6 0.9197 0.8184 2.9200 17 6 0.5768 -0.5158 3.0469 18 6 -0.6885 -0.8718 3.4765 19 6 -1.6169 0.1036 3.7806 20 6 -1.2769 1.4484 3.6546 21 6 -2.2713 2.5018 3.9796 22 7 -2.0845 3.8274 3.9115 23 7 -3.1884 4.3887 4.2727 24 7 -4.0450 3.4743 4.5680 25 1 -4.9526 3.6326 4.8713 26 7 -3.5077 2.3155 4.3967 27 6 0.0014 1.8017 3.2277 28 6 3.3444 1.5268 3.5199 29 6 3.4384 0.2165 2.7342 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.3859 1.7571 -1.9641 36 1 1.9867 3.1796 -1.0789 37 1 5.3022 2.7208 -4.3818 38 1 1.2999 -1.2821 2.8097 39 1 -0.9510 -1.9149 3.5744 40 1 -2.6049 -0.1754 4.1157 41 1 0.2717 2.8429 3.1327 42 1 4.0723 2.3052 3.2905 43 1 3.0329 1.4670 4.5626 44 1 3.1888 -0.7048 3.2605 45 1 4.2282 0.1321 1.9875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590690725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:31 Heat of formation + Delta-G solvation = 123.652546 kcal Electronic energy + Delta-G solvation = -29935.248656 eV Core-core repulsion = 25955.991040 eV Total energy + Delta-G solvation = -3979.257617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.48992 -41.70694 -39.88427 -37.58698 -36.97435 -35.42925 -34.81225 -34.51838 -31.96924 -31.86505 -31.21098 -29.80705 -26.25803 -25.62808 -25.59972 -24.41702 -23.85136 -23.54654 -22.61815 -21.84859 -20.21633 -19.50429 -19.09183 -18.41105 -18.17334 -17.35627 -17.24673 -16.54023 -16.33041 -16.15634 -15.90788 -15.28353 -15.11803 -14.97992 -14.75987 -14.52226 -14.44668 -13.91413 -13.82384 -13.69469 -13.39124 -13.37522 -13.20262 -12.69087 -12.58955 -12.50005 -12.40687 -12.36677 -12.29892 -12.13402 -12.11025 -12.01315 -11.83925 -11.74679 -11.50390 -11.32980 -10.85165 -10.63262 -9.75390 -9.55097 -9.40494 -8.36138 -6.40214 -0.28421 0.15293 0.37748 1.28678 1.31021 1.33188 1.40737 1.41088 1.71357 2.21548 2.28238 2.58942 2.70739 2.92588 2.98074 3.15046 3.53393 3.62744 3.91023 3.94174 4.08627 4.13290 4.18300 4.26125 4.39007 4.44720 4.45456 4.59122 4.65295 4.69578 4.72004 4.77563 4.90869 4.95512 4.96582 5.00407 5.01610 5.09225 5.20722 5.39673 5.45746 5.46427 5.49409 5.59589 5.61489 5.67053 5.95990 6.22825 6.60218 6.70774 7.09137 7.19844 7.40301 8.80552 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.003562 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.001275 B = 7858.665539 C = 8826.908596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.589 5.589 4 C 0.225 3.775 5 C -0.532 4.532 6 H 0.034 0.966 7 C 0.016 3.984 8 N -0.941 5.941 9 Si 0.940 3.060 10 H -0.279 1.279 11 H -0.270 1.270 12 H -0.244 1.244 13 C 0.537 3.463 14 O -0.596 6.596 15 C -0.129 4.129 16 C -0.041 4.041 17 C -0.080 4.080 18 C -0.100 4.100 19 C -0.074 4.074 20 C -0.032 4.032 21 C 0.210 3.790 22 N -0.308 5.308 23 N -0.061 5.061 24 N -0.198 5.198 25 H 0.495 0.505 26 N -0.286 5.286 27 C -0.082 4.082 28 C -0.141 4.141 29 C -0.131 4.131 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.045 0.955 36 H 0.010 0.990 37 H 0.269 0.731 38 H 0.160 0.840 39 H 0.175 0.825 40 H 0.151 0.849 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.130 0.870 44 H 0.153 0.847 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.376 -11.696 19.854 30.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.021 4.021 3 N -0.319 5.319 4 C 0.103 3.897 5 C -0.571 4.571 6 H 0.053 0.947 7 C -0.182 4.182 8 N -0.581 5.581 9 Si 0.764 3.236 10 H -0.205 1.205 11 H -0.195 1.195 12 H -0.167 1.167 13 C 0.325 3.675 14 O -0.478 6.478 15 C -0.132 4.132 16 C -0.041 4.041 17 C -0.098 4.098 18 C -0.118 4.118 19 C -0.094 4.094 20 C -0.035 4.035 21 C -0.070 4.070 22 N -0.179 5.179 23 N -0.056 5.056 24 N -0.050 5.050 25 H 0.354 0.646 26 N -0.139 5.139 27 C -0.103 4.103 28 C -0.178 4.178 29 C -0.168 4.168 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.063 0.937 36 H 0.028 0.972 37 H 0.078 0.922 38 H 0.178 0.822 39 H 0.192 0.808 40 H 0.169 0.831 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.148 0.852 44 H 0.170 0.830 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.331 -10.415 19.742 30.192 hybrid contribution -0.104 1.317 -0.924 1.612 sum -20.435 -9.098 18.817 29.231 Atomic orbital electron populations 1.22232 0.94586 1.03720 1.01532 1.21799 0.95280 0.81061 1.03929 1.47925 1.62812 1.15258 1.05870 1.19273 0.95710 0.92178 0.82557 1.21509 0.98799 1.30501 1.06290 0.94743 1.25745 0.97186 0.97308 0.97991 1.70024 1.21361 1.45799 1.20937 0.85822 0.80547 0.79148 0.78120 1.20470 1.19472 1.16709 1.20120 0.75995 0.86249 0.85117 1.90626 1.49882 1.19802 1.87460 1.19908 0.92057 1.06687 0.94547 1.18495 0.91216 0.94156 1.00276 1.21531 0.97968 0.94184 0.96124 1.21438 0.91681 1.01052 0.97609 1.21423 1.01212 0.89679 0.97072 1.17259 0.90144 0.90666 1.05431 1.23954 0.91265 0.91330 1.00443 1.76186 1.16162 1.06741 1.18852 1.78890 0.94807 1.18900 1.13040 1.47804 1.16638 0.99943 1.40577 0.64596 1.74835 1.09309 1.08963 1.20772 1.20812 0.92504 0.99354 0.97614 1.23095 0.98497 0.99219 0.96996 1.23312 0.96359 0.95119 1.02022 0.88113 0.92556 0.94395 0.91184 0.87792 0.93677 0.97152 0.92199 0.82247 0.80787 0.83083 0.88378 0.90430 0.85220 0.82965 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 9.37 71.98 0.67 -3.42 16 2 C 0.10 3.11 5.62 86.38 0.49 3.60 16 3 N -0.59 -25.29 2.46 -826.15 -2.03 -27.32 16 4 C 0.23 11.63 4.27 85.63 0.37 12.00 16 5 C -0.53 -32.13 9.94 25.60 0.25 -31.88 16 6 H 0.03 2.29 8.06 -2.91 -0.02 2.26 16 7 C 0.02 0.97 5.47 84.66 0.46 1.44 16 8 N -0.94 -60.21 13.96 21.45 0.30 -59.91 16 9 Si 0.94 46.19 27.47 68.60 1.88 48.07 16 10 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 12 H -0.24 -10.98 6.54 99.48 0.65 -10.33 16 13 C 0.54 23.44 6.79 87.66 0.60 24.03 16 14 O -0.60 -32.59 16.32 -3.05 -0.05 -32.64 16 15 C -0.13 -3.87 1.03 -53.67 -0.06 -3.92 16 16 C -0.04 -0.97 3.02 -19.90 -0.06 -1.03 16 17 C -0.08 -1.17 6.83 22.31 0.15 -1.02 16 18 C -0.10 -1.09 10.03 22.24 0.22 -0.87 16 19 C -0.07 -1.11 9.70 22.48 0.22 -0.90 16 20 C -0.03 -0.73 5.88 -20.04 -0.12 -0.85 16 21 C 0.21 5.20 7.94 137.39 1.09 6.29 16 22 N -0.31 -8.99 12.23 -52.19 -0.64 -9.63 16 23 N -0.06 -1.42 13.47 37.02 0.50 -0.92 16 24 N -0.20 -2.92 7.90 37.02 0.29 -2.63 16 25 H 0.49 1.82 8.96 -347.54 -3.12 -1.29 16 26 N -0.29 -5.37 12.08 -52.13 -0.63 -6.00 16 27 C -0.08 -2.28 8.86 22.48 0.20 -2.08 16 28 C -0.14 -3.83 9.77 30.62 0.30 -3.53 16 29 C -0.13 -3.04 8.46 30.62 0.26 -2.78 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.45 5.50 -2.38 -0.01 1.44 16 32 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 2.28 8.12 -2.39 -0.02 2.26 16 34 H 0.10 2.51 4.24 -2.39 -0.01 2.50 16 35 H 0.05 2.17 7.13 -2.39 -0.02 2.16 16 36 H 0.01 0.59 6.81 -2.39 -0.02 0.57 16 37 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 38 H 0.16 1.46 6.30 -2.91 -0.02 1.44 16 39 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 40 H 0.15 1.68 7.88 -2.91 -0.02 1.66 16 41 H 0.10 3.44 7.89 -2.91 -0.02 3.41 16 42 H 0.08 2.57 8.04 -2.38 -0.02 2.55 16 43 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 44 H 0.15 2.03 6.92 -2.39 -0.02 2.01 16 45 H 0.08 2.38 8.14 -2.38 -0.02 2.37 16 Total: -1.00 -89.24 374.40 2.55 -86.69 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -2.12 Total: 9.21 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 5.05 Total: -4.91 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -2.21 Total: -106.42 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.05 Total: -32.64 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.88 Total: 48.07 kcal Total: -89.24 2.55 -86.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590690725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.340 kcal (2) G-P(sol) polarization free energy of solvation -89.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds