Wall clock time and date at job start Wed Apr 1 2020 00:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 O 1.45200 * 109.47259 * 120.00178 * 2 1 3 5 5 C 1.34227 * 117.00072 * 269.99828 * 4 2 1 6 6 O 1.20828 * 119.99985 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00181 * 180.02562 * 5 4 2 8 8 C 1.53000 * 109.47510 * 180.02562 * 7 5 4 9 9 C 1.52991 * 109.47336 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.47241 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99920 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00171 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00198 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 120.00078 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46964 * 60.00042 * 14 12 10 16 16 H 1.48497 * 109.46979 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47074 * 299.99971 * 14 12 10 18 18 C 1.50703 * 109.47081 * 239.99977 * 2 1 3 19 19 O 1.21279 * 120.00495 * 250.09493 * 18 2 1 20 20 N 1.34782 * 119.99412 * 70.09217 * 18 2 1 21 21 C 1.46921 * 120.63304 * 5.08500 * 20 18 2 22 22 C 1.52764 * 109.00527 * 233.58213 * 21 20 18 23 23 C 1.53043 * 109.38527 * 305.58527 * 22 21 20 24 24 C 1.50693 * 109.45043 * 181.25409 * 23 22 21 25 25 O 1.20827 * 120.00126 * 239.94034 * 24 23 22 26 26 O 1.34228 * 120.00088 * 59.94184 * 24 23 22 27 27 C 1.53043 * 109.53353 * 61.23913 * 23 22 21 28 28 C 1.46927 * 120.62520 * 185.36160 * 20 18 2 29 29 H 1.09006 * 109.46995 * 295.00516 * 1 2 3 30 30 H 1.08995 * 109.47377 * 55.00321 * 1 2 3 31 31 H 1.08994 * 109.47005 * 175.01177 * 1 2 3 32 32 H 1.09000 * 109.47251 * 299.99994 * 7 5 4 33 33 H 1.09006 * 109.46985 * 59.99482 * 7 5 4 34 34 H 1.09008 * 109.46596 * 299.99888 * 8 7 5 35 35 H 1.08997 * 109.46988 * 59.99094 * 8 7 5 36 36 H 1.09000 * 109.47533 * 299.99933 * 9 8 7 37 37 H 1.09005 * 109.47474 * 59.99994 * 9 8 7 38 38 H 0.96997 * 120.00006 * 179.97438 * 13 12 10 39 39 H 1.08999 * 109.58640 * 353.41221 * 21 20 18 40 40 H 1.08995 * 109.58917 * 113.84804 * 21 20 18 41 41 H 1.09002 * 109.56123 * 185.55220 * 22 21 20 42 42 H 1.08998 * 109.36299 * 65.49981 * 22 21 20 43 43 H 1.09000 * 109.46249 * 301.22336 * 23 22 21 44 44 H 0.96700 * 116.99992 * 179.97438 * 26 24 23 45 45 H 1.08997 * 109.49489 * 178.67951 * 27 23 22 46 46 H 1.09000 * 109.49363 * 58.59138 * 27 23 22 47 47 H 1.09006 * 109.58557 * 246.15324 * 28 20 18 48 48 H 1.09001 * 109.59034 * 6.44218 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2172 0.0639 2.2811 6 8 1.9983 1.2518 2.2503 7 6 2.7194 -0.5771 3.5491 8 6 2.8634 0.4888 4.6372 9 6 3.3726 -0.1621 5.9247 10 6 3.5150 0.8879 6.9962 11 1 3.2666 1.9166 6.7805 12 6 3.9613 0.5352 8.2521 13 7 4.2633 -0.7176 8.5149 14 14 4.1371 1.8367 9.5806 15 1 2.8168 2.4677 9.8331 16 1 4.6315 1.2049 10.8302 17 1 5.1033 2.8722 9.1342 18 6 2.0323 -0.7104 -1.2305 19 8 2.5716 -1.7919 -1.1287 20 7 1.8822 -0.1438 -2.4442 21 6 1.3325 1.2125 -2.5743 22 6 0.1527 1.1802 -3.5443 23 6 0.5996 0.5532 -4.8669 24 6 -0.5548 0.5486 -5.8355 25 8 -0.9640 -0.4965 -6.2829 26 8 -1.1286 1.7057 -6.2012 27 6 1.0643 -0.8841 -4.6207 28 6 2.2595 -0.8731 -3.6625 29 1 -0.3633 0.4344 0.9314 30 1 -0.3634 0.5894 -0.8418 31 1 -0.3633 -1.0237 -0.0894 32 1 2.0106 -1.3374 3.8773 33 1 3.6885 -1.0401 3.3630 34 1 3.5720 1.2494 4.3092 35 1 1.8941 0.9515 4.8230 36 1 2.6637 -0.9224 6.2525 37 1 4.3419 -0.6250 5.7391 38 1 4.5776 -0.9657 9.3984 39 1 0.9931 1.5643 -1.6000 40 1 2.1007 1.8827 -2.9599 41 1 -0.1999 2.1958 -3.7240 42 1 -0.6530 0.5857 -3.1137 43 1 1.4219 1.1340 -5.2847 44 1 -1.8656 1.6523 -6.8250 45 1 1.3603 -1.3378 -5.5665 46 1 0.2499 -1.4592 -4.1799 47 1 3.1049 -0.3764 -4.1387 48 1 2.5340 -1.8963 -3.4058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593517520.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:00 Heat of formation + Delta-G solvation = -230.765490 kcal Electronic energy + Delta-G solvation = -29596.181052 eV Core-core repulsion = 25229.660294 eV Total energy + Delta-G solvation = -4366.520758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.39971 -40.77746 -39.91253 -37.82475 -36.69410 -36.50535 -34.32289 -33.96089 -32.63458 -32.07608 -31.14608 -28.14094 -27.38923 -25.20660 -24.26738 -23.65710 -22.91394 -21.45355 -20.81615 -19.85329 -19.49691 -18.63941 -18.07744 -17.46402 -17.19516 -16.63148 -16.30576 -16.24517 -16.17426 -15.67955 -15.27994 -14.97066 -14.52079 -14.41588 -14.25689 -14.13053 -13.93704 -13.57463 -13.27858 -12.96524 -12.79136 -12.59825 -12.41820 -12.29734 -12.13626 -11.95450 -11.90770 -11.81956 -11.51709 -11.43512 -11.35763 -11.03784 -10.88131 -10.81305 -10.70383 -10.60219 -10.30362 -9.95764 -9.73647 -9.40050 -9.21826 -9.10381 -8.33505 -5.98870 -4.01082 1.60092 2.06568 2.16936 2.40322 2.43488 2.96100 3.35460 3.39454 3.42524 3.82264 3.91935 4.02777 4.20964 4.39252 4.47548 4.51272 4.59730 4.63040 4.70535 4.75610 4.83916 4.90626 5.00842 5.12645 5.16217 5.28042 5.32015 5.36976 5.38913 5.40510 5.59686 5.62072 5.65794 5.73449 5.91651 5.95558 6.08684 6.46179 6.61149 6.80794 6.80956 7.06524 7.29805 7.67108 7.72171 7.79023 7.93259 8.00552 8.42907 9.05330 9.62854 11.12433 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.032017 B = 0.001673 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.317082 B =16729.996135 C =17210.352594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.067 3.933 3 H 0.108 0.892 4 O -0.333 6.333 5 C 0.462 3.538 6 O -0.508 6.508 7 C -0.111 4.111 8 C -0.099 4.099 9 C 0.020 3.980 10 C -0.521 4.521 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.523 3.477 19 O -0.509 6.509 20 N -0.614 5.614 21 C 0.099 3.901 22 C -0.129 4.129 23 C -0.079 4.079 24 C 0.483 3.517 25 O -0.512 6.512 26 O -0.516 6.516 27 C -0.120 4.120 28 C 0.115 3.885 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.411 0.589 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.975 3.961 -32.561 34.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.008 3.992 3 H 0.126 0.874 4 O -0.250 6.250 5 C 0.306 3.694 6 O -0.395 6.395 7 C -0.148 4.148 8 C -0.136 4.136 9 C -0.017 4.017 10 C -0.559 4.559 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.310 3.690 19 O -0.383 6.383 20 N -0.351 5.351 21 C -0.023 4.023 22 C -0.168 4.168 23 C -0.098 4.098 24 C 0.324 3.676 25 O -0.399 6.399 26 O -0.328 6.328 27 C -0.159 4.159 28 C -0.007 4.007 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.132 0.868 44 H 0.270 0.730 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.464 3.329 -32.216 33.742 hybrid contribution -0.509 0.837 0.144 0.990 sum -9.973 4.166 -32.073 33.845 Atomic orbital electron populations 1.22229 0.91867 1.04083 1.04273 1.22344 0.96016 0.97637 0.83228 0.87397 1.86720 1.77164 1.41768 1.19315 1.24615 0.73521 0.86196 0.85065 1.90623 1.48148 1.16783 1.83927 1.21731 1.03262 1.01443 0.88406 1.21585 1.01751 0.95962 0.94337 1.19129 0.96448 0.96111 0.89991 1.21188 1.44161 0.94688 0.95873 0.92599 1.25021 0.95481 0.95341 0.98617 1.69953 1.45213 1.16423 1.21884 0.86636 0.78485 0.81740 0.81009 1.20243 1.21305 1.20248 1.20241 0.78919 0.85943 0.83898 1.90751 1.41047 1.20919 1.85561 1.48019 1.64801 1.16587 1.05689 1.21860 0.95847 0.83390 1.01233 1.21910 0.98805 1.02807 0.93229 1.21070 0.94663 1.00134 0.93963 1.23464 0.83165 0.80913 0.80009 1.90752 1.62395 1.33232 1.53549 1.84527 1.49904 1.36260 1.62072 1.21885 0.99198 0.93967 1.00815 1.21628 0.96054 0.99389 0.83657 0.90142 0.90209 0.90787 0.87863 0.87834 0.92416 0.92403 0.96294 0.96292 0.92938 0.88440 0.90053 0.88621 0.90421 0.86769 0.72958 0.89327 0.90204 0.90767 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.21 37.16 0.34 -1.15 16 2 C 0.07 0.77 2.12 -27.88 -0.06 0.71 16 3 H 0.11 1.17 6.17 -51.93 -0.32 0.84 16 4 O -0.33 -5.05 9.44 -45.83 -0.43 -5.48 16 5 C 0.46 7.56 7.93 36.01 0.29 7.84 16 6 O -0.51 -9.08 15.20 -18.75 -0.29 -9.37 16 7 C -0.11 -1.87 5.81 -27.88 -0.16 -2.03 16 8 C -0.10 -2.06 4.44 -26.74 -0.12 -2.17 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 11 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 14 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.52 6.09 7.03 -10.98 -0.08 6.01 16 19 O -0.51 -8.00 15.97 -13.88 -0.22 -8.22 16 20 N -0.61 -4.70 2.98 -173.03 -0.52 -5.22 16 21 C 0.10 0.45 5.57 -3.93 -0.02 0.43 16 22 C -0.13 -0.46 5.17 -26.83 -0.14 -0.60 16 23 C -0.08 -0.33 2.59 -91.73 -0.24 -0.56 16 24 C 0.48 2.80 7.63 36.00 0.27 3.07 16 25 O -0.51 -4.77 16.74 -18.75 -0.31 -5.08 16 26 O -0.52 -1.91 13.30 -39.25 -0.52 -2.43 16 27 C -0.12 -0.65 4.65 -26.61 -0.12 -0.78 16 28 C 0.11 0.73 6.42 -3.71 -0.02 0.71 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.47 5.68 -51.93 -0.30 0.18 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 34 H 0.06 1.23 8.10 -51.92 -0.42 0.81 16 35 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.10 0.44 4.52 -51.93 -0.23 0.20 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.10 0.22 8.08 -51.93 -0.42 -0.20 16 42 H 0.08 0.33 7.78 -51.93 -0.40 -0.07 16 43 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.41 0.07 9.10 45.56 0.41 0.49 16 45 H 0.09 0.45 8.07 -51.93 -0.42 0.03 16 46 H 0.08 0.56 8.13 -51.93 -0.42 0.14 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.10 0.85 7.04 -51.93 -0.37 0.48 16 LS Contribution 395.99 15.07 5.97 5.97 Total: -1.00 -37.34 395.99 -7.87 -45.21 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -6.65 Total: -4.26 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.61 Total: -1.76 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.22 Total: -31.34 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -1.78 Total: -30.58 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.34 -7.87 -45.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593517520.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.553 kcal (2) G-P(sol) polarization free energy of solvation -37.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds