Wall clock time and date at job start Wed Apr 1 2020 00:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 O 1.45200 * 109.47259 * 120.00178 * 2 1 3 5 5 C 1.34227 * 117.00072 * 269.99828 * 4 2 1 6 6 O 1.20828 * 119.99985 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00181 * 180.02562 * 5 4 2 8 8 C 1.53000 * 109.47510 * 180.02562 * 7 5 4 9 9 C 1.52991 * 109.47336 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.47241 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99920 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00171 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00198 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 120.00078 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46964 * 60.00042 * 14 12 10 16 16 H 1.48497 * 109.46979 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47074 * 299.99971 * 14 12 10 18 18 C 1.50703 * 109.47081 * 239.99977 * 2 1 3 19 19 O 1.21279 * 120.00495 * 250.09493 * 18 2 1 20 20 N 1.34782 * 119.99412 * 70.09217 * 18 2 1 21 21 C 1.46921 * 120.63304 * 5.08500 * 20 18 2 22 22 C 1.52764 * 109.00527 * 233.58213 * 21 20 18 23 23 C 1.53043 * 109.38527 * 305.58527 * 22 21 20 24 24 C 1.50693 * 109.45043 * 181.25409 * 23 22 21 25 25 O 1.20827 * 120.00126 * 239.94034 * 24 23 22 26 26 O 1.34228 * 120.00088 * 59.94184 * 24 23 22 27 27 C 1.53043 * 109.53353 * 61.23913 * 23 22 21 28 28 C 1.46927 * 120.62520 * 185.36160 * 20 18 2 29 29 H 1.09006 * 109.46995 * 295.00516 * 1 2 3 30 30 H 1.08995 * 109.47377 * 55.00321 * 1 2 3 31 31 H 1.08994 * 109.47005 * 175.01177 * 1 2 3 32 32 H 1.09000 * 109.47251 * 299.99994 * 7 5 4 33 33 H 1.09006 * 109.46985 * 59.99482 * 7 5 4 34 34 H 1.09008 * 109.46596 * 299.99888 * 8 7 5 35 35 H 1.08997 * 109.46988 * 59.99094 * 8 7 5 36 36 H 1.09000 * 109.47533 * 299.99933 * 9 8 7 37 37 H 1.09005 * 109.47474 * 59.99994 * 9 8 7 38 38 H 0.96997 * 120.00006 * 179.97438 * 13 12 10 39 39 H 1.08999 * 109.58640 * 353.41221 * 21 20 18 40 40 H 1.08995 * 109.58917 * 113.84804 * 21 20 18 41 41 H 1.09002 * 109.56123 * 185.55220 * 22 21 20 42 42 H 1.08998 * 109.36299 * 65.49981 * 22 21 20 43 43 H 1.09000 * 109.46249 * 301.22336 * 23 22 21 44 44 H 0.96700 * 116.99992 * 179.97438 * 26 24 23 45 45 H 1.08997 * 109.49489 * 178.67951 * 27 23 22 46 46 H 1.09000 * 109.49363 * 58.59138 * 27 23 22 47 47 H 1.09006 * 109.58557 * 246.15324 * 28 20 18 48 48 H 1.09001 * 109.59034 * 6.44218 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2172 0.0639 2.2811 6 8 1.9983 1.2518 2.2503 7 6 2.7194 -0.5771 3.5491 8 6 2.8634 0.4888 4.6372 9 6 3.3726 -0.1621 5.9247 10 6 3.5150 0.8879 6.9962 11 1 3.2666 1.9166 6.7805 12 6 3.9613 0.5352 8.2521 13 7 4.2633 -0.7176 8.5149 14 14 4.1371 1.8367 9.5806 15 1 2.8168 2.4677 9.8331 16 1 4.6315 1.2049 10.8302 17 1 5.1033 2.8722 9.1342 18 6 2.0323 -0.7104 -1.2305 19 8 2.5716 -1.7919 -1.1287 20 7 1.8822 -0.1438 -2.4442 21 6 1.3325 1.2125 -2.5743 22 6 0.1527 1.1802 -3.5443 23 6 0.5996 0.5532 -4.8669 24 6 -0.5548 0.5486 -5.8355 25 8 -0.9640 -0.4965 -6.2829 26 8 -1.1286 1.7057 -6.2012 27 6 1.0643 -0.8841 -4.6207 28 6 2.2595 -0.8731 -3.6625 29 1 -0.3633 0.4344 0.9314 30 1 -0.3634 0.5894 -0.8418 31 1 -0.3633 -1.0237 -0.0894 32 1 2.0106 -1.3374 3.8773 33 1 3.6885 -1.0401 3.3630 34 1 3.5720 1.2494 4.3092 35 1 1.8941 0.9515 4.8230 36 1 2.6637 -0.9224 6.2525 37 1 4.3419 -0.6250 5.7391 38 1 4.5776 -0.9657 9.3984 39 1 0.9931 1.5643 -1.6000 40 1 2.1007 1.8827 -2.9599 41 1 -0.1999 2.1958 -3.7240 42 1 -0.6530 0.5857 -3.1137 43 1 1.4219 1.1340 -5.2847 44 1 -1.8656 1.6523 -6.8250 45 1 1.3603 -1.3378 -5.5665 46 1 0.2499 -1.4592 -4.1799 47 1 3.1049 -0.3764 -4.1387 48 1 2.5340 -1.8963 -3.4058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593517520.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:59 Heat of formation + Delta-G solvation = -254.582240 kcal Electronic energy + Delta-G solvation = -29597.213823 eV Core-core repulsion = 25229.660294 eV Total energy + Delta-G solvation = -4367.553530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.15527 -41.56350 -40.80309 -38.52946 -37.70167 -37.11289 -36.16230 -34.66422 -34.09933 -33.19757 -31.78058 -29.93687 -27.94849 -26.44040 -25.49526 -24.30386 -23.60210 -22.68658 -21.63558 -21.31531 -20.14317 -19.16801 -19.02024 -18.46777 -18.33774 -17.75121 -17.52506 -17.33479 -16.73383 -16.55432 -16.40772 -16.21695 -15.72431 -15.38219 -14.97972 -14.81716 -14.57918 -14.44911 -14.38147 -14.01024 -13.84060 -13.73273 -13.43164 -13.40296 -13.14087 -12.98243 -12.76668 -12.62809 -12.55231 -12.52255 -12.46310 -12.30590 -12.01561 -11.88965 -11.74204 -11.70079 -11.57186 -11.50703 -11.39185 -11.18194 -10.84727 -10.52450 -9.85953 -8.18159 -6.28580 1.07243 1.17540 1.21707 1.31938 1.42060 1.44804 1.52858 2.02960 2.13329 2.43502 3.15163 3.15914 3.52976 3.55892 3.64266 3.76385 3.78406 3.89856 3.96862 4.12474 4.18119 4.23496 4.28384 4.37190 4.46017 4.50809 4.62517 4.65334 4.67717 4.74557 4.79125 4.90163 4.92183 5.00161 5.04686 5.05464 5.14882 5.20504 5.25991 5.42439 5.54290 5.62908 5.73767 5.87167 6.10151 6.26851 6.65341 6.87064 6.91655 6.98531 7.40102 8.93188 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.032017 B = 0.001673 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.317082 B =16729.996135 C =17210.352594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.059 3.941 3 H 0.120 0.880 4 O -0.344 6.344 5 C 0.473 3.527 6 O -0.525 6.525 7 C -0.108 4.108 8 C -0.083 4.083 9 C 0.022 3.978 10 C -0.546 4.546 11 H 0.057 0.943 12 C 0.001 3.999 13 N -0.930 5.930 14 Si 0.964 3.036 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.268 1.268 18 C 0.520 3.480 19 O -0.562 6.562 20 N -0.603 5.603 21 C 0.092 3.908 22 C -0.123 4.123 23 C -0.077 4.077 24 C 0.488 3.512 25 O -0.555 6.555 26 O -0.509 6.509 27 C -0.113 4.113 28 C 0.114 3.886 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.002 0.998 37 H 0.001 0.999 38 H 0.264 0.736 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.069 0.931 43 H 0.141 0.859 44 H 0.427 0.573 45 H 0.091 0.909 46 H 0.058 0.942 47 H 0.099 0.901 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.530 6.422 -33.866 36.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.001 3.999 3 H 0.137 0.863 4 O -0.260 6.260 5 C 0.317 3.683 6 O -0.414 6.414 7 C -0.145 4.145 8 C -0.121 4.121 9 C -0.015 4.015 10 C -0.584 4.584 11 H 0.075 0.925 12 C -0.197 4.197 13 N -0.570 5.570 14 Si 0.788 3.212 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.193 1.193 18 C 0.308 3.692 19 O -0.440 6.440 20 N -0.338 5.338 21 C -0.029 4.029 22 C -0.161 4.161 23 C -0.095 4.095 24 C 0.332 3.668 25 O -0.446 6.446 26 O -0.322 6.322 27 C -0.151 4.151 28 C -0.007 4.007 29 H 0.092 0.908 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.021 0.979 37 H 0.019 0.981 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.137 0.863 42 H 0.088 0.912 43 H 0.159 0.841 44 H 0.288 0.712 45 H 0.109 0.891 46 H 0.077 0.923 47 H 0.117 0.883 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.052 5.845 -33.579 35.535 hybrid contribution -0.377 0.097 0.411 0.566 sum -10.429 5.942 -33.167 35.272 Atomic orbital electron populations 1.22239 0.89850 1.04363 1.05382 1.22717 0.97612 0.97736 0.81799 0.86272 1.86669 1.77118 1.42208 1.20048 1.24188 0.73135 0.85700 0.85230 1.90610 1.49083 1.17354 1.84345 1.21535 1.04492 1.00431 0.88035 1.21263 1.00914 0.96434 0.93452 1.19033 0.95214 0.95379 0.91837 1.21642 1.44297 0.95388 0.97074 0.92455 1.25941 0.94979 0.97615 1.01150 1.70075 1.45904 1.18431 1.22608 0.85524 0.78883 0.78933 0.77846 1.19267 1.20726 1.19340 1.20321 0.78587 0.85349 0.84978 1.90729 1.43766 1.23126 1.86404 1.48111 1.63336 1.17598 1.04720 1.22177 0.96997 0.81716 1.02013 1.21892 0.97980 1.03886 0.92320 1.21107 0.94964 0.99308 0.94165 1.23696 0.82988 0.80615 0.79471 1.90748 1.63767 1.34759 1.55280 1.84490 1.50419 1.35039 1.62298 1.21758 0.97963 0.95059 1.00311 1.21713 0.97322 0.98428 0.83272 0.90771 0.86867 0.91373 0.86440 0.86852 0.93012 0.92770 0.97923 0.98093 0.92741 0.88066 0.87505 0.86343 0.91216 0.84099 0.71160 0.89069 0.92330 0.88298 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.21 71.98 0.66 -2.00 16 2 C 0.06 1.32 2.12 29.85 0.06 1.38 16 3 H 0.12 2.37 6.17 -2.39 -0.01 2.36 16 4 O -0.34 -10.33 9.44 -45.09 -0.43 -10.76 16 5 C 0.47 15.21 7.93 71.24 0.56 15.77 16 6 O -0.53 -18.32 15.20 21.96 0.33 -17.99 16 7 C -0.11 -3.61 5.81 29.85 0.17 -3.44 16 8 C -0.08 -3.47 4.44 30.59 0.14 -3.34 16 9 C 0.02 1.17 4.97 29.84 0.15 1.32 16 10 C -0.55 -31.37 9.11 25.60 0.23 -31.14 16 11 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 12 C 0.00 0.07 5.46 84.65 0.46 0.53 16 13 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 14 Si 0.96 44.52 29.54 68.60 2.03 46.54 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 C 0.52 11.91 7.03 87.66 0.62 12.52 16 19 O -0.56 -18.20 15.97 15.56 0.25 -17.95 16 20 N -0.60 -8.32 2.98 -819.74 -2.44 -10.76 16 21 C 0.09 0.54 5.57 86.22 0.48 1.02 16 22 C -0.12 -0.47 5.17 30.53 0.16 -0.31 16 23 C -0.08 -0.43 2.59 -11.51 -0.03 -0.46 16 24 C 0.49 4.68 7.63 71.23 0.54 5.22 16 25 O -0.55 -9.95 16.74 21.96 0.37 -9.58 16 26 O -0.51 -2.37 13.30 -51.39 -0.68 -3.05 16 27 C -0.11 -1.10 4.65 30.67 0.14 -0.96 16 28 C 0.11 1.34 6.42 86.36 0.55 1.90 16 29 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.11 1.05 5.68 -2.39 -0.01 1.04 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 33 H 0.11 3.59 8.14 -2.38 -0.02 3.57 16 34 H 0.05 2.20 8.10 -2.38 -0.02 2.18 16 35 H 0.05 2.28 8.10 -2.39 -0.02 2.27 16 36 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 38 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.10 0.57 4.52 -2.39 -0.01 0.56 16 40 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.12 0.02 8.08 -2.39 -0.02 0.00 16 42 H 0.07 0.42 7.78 -2.39 -0.02 0.40 16 43 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.43 -0.84 9.10 -74.06 -0.67 -1.51 16 45 H 0.09 0.86 8.07 -2.39 -0.02 0.85 16 46 H 0.06 0.83 8.13 -2.39 -0.02 0.82 16 47 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 48 H 0.08 1.35 7.04 -2.39 -0.02 1.33 16 Total: -1.00 -82.45 395.99 4.93 -77.53 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 0.31 Total: 4.10 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 4.91 Total: -1.96 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: -2.16 Total: -66.88 kcal Atomic # 8 Polarization: -59.17 SS G_CDS: -0.16 Total: -59.32 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -82.45 4.93 -77.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593517520.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.056 kcal (2) G-P(sol) polarization free energy of solvation -82.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -259.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds