Wall clock time and date at job start Wed Apr 1 2020 00:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.47227 * 2 1 4 4 O 1.45197 * 109.47691 * 239.99707 * 2 1 3 5 5 C 1.34232 * 117.00030 * 89.99782 * 4 2 1 6 6 O 1.20831 * 119.99611 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00208 * 180.02562 * 5 4 2 8 8 C 1.52993 * 109.47106 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47034 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.47192 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00255 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99916 * 180.02562 * 10 9 8 13 13 N 1.31525 * 119.99808 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00392 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.46866 * 90.00044 * 14 12 10 16 16 H 1.48493 * 109.47545 * 210.00571 * 14 12 10 17 17 H 1.48500 * 109.46678 * 330.00511 * 14 12 10 18 18 C 1.50707 * 109.47178 * 119.99933 * 2 1 3 19 19 O 1.21277 * 120.00117 * 112.23721 * 18 2 1 20 20 N 1.34782 * 119.99752 * 292.24178 * 18 2 1 21 21 C 1.46922 * 120.63119 * 355.24494 * 20 18 2 22 22 C 1.53196 * 108.77648 * 233.58657 * 21 20 18 23 23 C 1.53039 * 109.30928 * 305.36370 * 22 21 20 24 24 C 1.50696 * 109.45716 * 181.38344 * 23 22 21 25 25 O 1.20825 * 120.00297 * 239.93161 * 24 23 22 26 26 O 1.34225 * 120.00268 * 59.93421 * 24 23 22 27 27 C 1.53048 * 109.53875 * 61.36690 * 23 22 21 28 28 C 1.46923 * 120.63056 * 175.22044 * 20 18 2 29 29 H 1.08997 * 109.47546 * 186.41283 * 1 2 3 30 30 H 1.09000 * 109.47791 * 306.41551 * 1 2 3 31 31 H 1.09003 * 109.46951 * 66.41617 * 1 2 3 32 32 H 1.08997 * 109.46883 * 300.00305 * 7 5 4 33 33 H 1.09001 * 109.46604 * 60.00136 * 7 5 4 34 34 H 1.08997 * 109.47589 * 299.99983 * 8 7 5 35 35 H 1.09010 * 109.47194 * 60.00316 * 8 7 5 36 36 H 1.08999 * 109.47636 * 299.99961 * 9 8 7 37 37 H 1.09005 * 109.47300 * 60.00575 * 9 8 7 38 38 H 0.96998 * 119.99603 * 180.02562 * 13 12 10 39 39 H 1.09007 * 109.59059 * 353.37550 * 21 20 18 40 40 H 1.08999 * 109.58694 * 113.79773 * 21 20 18 41 41 H 1.08998 * 109.49286 * 65.31612 * 22 21 20 42 42 H 1.09002 * 109.49982 * 185.41395 * 22 21 20 43 43 H 1.09000 * 109.46047 * 301.34265 * 23 22 21 44 44 H 0.96703 * 117.00741 * 179.97438 * 26 24 23 45 45 H 1.09000 * 109.49582 * 178.67869 * 27 23 22 46 46 H 1.09000 * 109.52223 * 58.59716 * 27 23 22 47 47 H 1.09001 * 109.58561 * 246.20391 * 28 20 18 48 48 H 1.09007 * 109.58556 * 6.48351 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1854 5 6 2.2172 0.0639 -2.2811 6 8 1.9981 1.2518 -2.2503 7 6 2.7184 -0.5773 -3.5494 8 6 2.8625 0.4887 -4.6373 9 6 3.3720 -0.1622 -5.9248 10 6 3.5145 0.8879 -6.9963 11 1 3.2669 1.9167 -6.7805 12 6 3.9610 0.5352 -8.2522 13 7 4.0859 1.4517 -9.1871 14 14 4.3900 -1.2442 -8.6254 15 1 3.1836 -1.9492 -9.1281 16 1 5.4564 -1.2903 -9.6577 17 1 4.8709 -1.9075 -7.3869 18 6 2.0323 -0.7104 1.2305 19 8 2.6092 -1.7720 1.1248 20 7 1.8403 -0.1660 2.4485 21 6 1.2367 1.1663 2.5862 22 6 2.1614 2.0409 3.4389 23 6 2.4397 1.3364 4.7687 24 6 3.3216 2.2091 5.6241 25 8 4.4021 1.8065 5.9852 26 8 2.9069 3.4336 5.9849 27 6 3.1439 0.0035 4.5043 28 6 2.2303 -0.8940 3.6637 29 1 -0.3634 -1.0212 0.1148 30 1 -0.3635 0.6100 0.8270 31 1 -0.3633 0.4112 -0.9419 32 1 3.6873 -1.0409 -3.3638 33 1 2.0089 -1.3370 -3.8773 34 1 1.8935 0.9519 -4.8228 35 1 3.5718 1.2488 -4.3096 36 1 4.3412 -0.6251 -5.7391 37 1 2.6630 -0.9225 -6.2528 38 1 4.3997 1.2035 -10.0708 39 1 1.1148 1.6160 1.6007 40 1 0.2653 1.0789 3.0728 41 1 3.1001 2.2021 2.9090 42 1 1.6810 3.0006 3.6292 43 1 1.4983 1.1533 5.2867 44 1 3.5070 3.9563 6.5343 45 1 3.3628 -0.4867 5.4529 46 1 4.0737 0.1835 3.9647 47 1 1.3399 -1.1495 4.2381 48 1 2.7619 -1.8051 3.3891 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593517521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:02 Heat of formation + Delta-G solvation = -227.381962 kcal Electronic energy + Delta-G solvation = -29665.195108 eV Core-core repulsion = 25298.821071 eV Total energy + Delta-G solvation = -4366.374037 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.39085 -40.80241 -39.94919 -37.83368 -36.67406 -36.55841 -34.44967 -34.03262 -32.56090 -32.10626 -31.21332 -28.65324 -27.35670 -25.30292 -24.28580 -23.71368 -22.81402 -21.35255 -20.67256 -19.91334 -19.67002 -18.61385 -18.08537 -17.49032 -17.20423 -16.73364 -16.55146 -16.38328 -16.13096 -15.70370 -15.48320 -14.69213 -14.59385 -14.43223 -14.23432 -14.07800 -13.87737 -13.65889 -13.40601 -12.92609 -12.86781 -12.70840 -12.61462 -12.39892 -12.11484 -12.08751 -11.93200 -11.91107 -11.69804 -11.50898 -11.36856 -11.05495 -11.02255 -10.90997 -10.81207 -10.43841 -10.02250 -9.96175 -9.76855 -9.67255 -9.24505 -9.18443 -8.52497 -6.02553 -4.00930 1.62648 2.01574 2.14334 2.34721 2.44377 2.90445 3.32203 3.39830 3.42978 3.81052 3.92667 4.01840 4.20627 4.39583 4.46439 4.47244 4.54512 4.60251 4.70631 4.74657 4.81314 4.88937 4.98871 5.12981 5.17169 5.23613 5.29642 5.30731 5.38453 5.38887 5.49285 5.50820 5.61790 5.68746 5.90200 5.94607 5.96976 6.38072 6.45399 6.58397 6.77467 6.84673 7.29942 7.32331 7.39757 7.68406 7.79209 7.86521 8.55666 9.03062 9.59212 11.10842 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.001841 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.680682 B =15207.380215 C =15602.790955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.066 3.934 3 H 0.109 0.891 4 O -0.333 6.333 5 C 0.462 3.538 6 O -0.505 6.505 7 C -0.114 4.114 8 C -0.091 4.091 9 C -0.015 4.015 10 C -0.520 4.520 11 H 0.073 0.927 12 C 0.065 3.935 13 N -0.903 5.903 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.265 1.265 18 C 0.523 3.477 19 O -0.511 6.511 20 N -0.614 5.614 21 C 0.102 3.898 22 C -0.130 4.130 23 C -0.079 4.079 24 C 0.482 3.518 25 O -0.511 6.511 26 O -0.516 6.516 27 C -0.121 4.121 28 C 0.115 3.885 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.018 0.982 37 H 0.014 0.986 38 H 0.263 0.737 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.114 0.886 44 H 0.412 0.588 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.048 -0.593 34.341 35.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.008 3.992 3 H 0.127 0.873 4 O -0.250 6.250 5 C 0.306 3.694 6 O -0.391 6.391 7 C -0.151 4.151 8 C -0.129 4.129 9 C -0.052 4.052 10 C -0.558 4.558 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.542 5.542 14 Si 0.708 3.292 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.189 1.189 18 C 0.310 3.690 19 O -0.384 6.384 20 N -0.351 5.351 21 C -0.021 4.021 22 C -0.168 4.168 23 C -0.098 4.098 24 C 0.324 3.676 25 O -0.399 6.399 26 O -0.328 6.328 27 C -0.159 4.159 28 C -0.007 4.007 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.037 0.963 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.132 0.868 44 H 0.271 0.729 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.712 -1.144 33.962 35.080 hybrid contribution 0.630 -0.226 0.221 0.705 sum -8.082 -1.371 34.183 35.152 Atomic orbital electron populations 1.22214 0.91731 1.04019 1.04424 1.22355 0.96106 0.97617 0.83148 0.87336 1.86703 1.77203 1.41765 1.19334 1.24492 0.73681 0.86204 0.85063 1.90643 1.47900 1.16700 1.83889 1.21735 1.03279 1.01394 0.88705 1.21401 1.02341 0.95922 0.93245 1.19606 0.95950 0.96823 0.92818 1.21114 1.44365 0.95752 0.94584 0.90911 1.25049 0.95036 0.97329 0.96208 1.69924 1.47305 1.33298 1.03697 0.86763 0.78423 0.85677 0.78334 1.20284 1.21412 1.18932 1.20232 0.79107 0.85786 0.83876 1.90748 1.39920 1.22076 1.85663 1.48024 1.62954 1.18558 1.05557 1.21954 0.96288 0.82005 1.01832 1.21977 1.01795 0.99312 0.93721 1.21067 0.99178 0.94046 0.95484 1.23455 0.85855 0.80308 0.77981 1.90753 1.22911 1.73331 1.52877 1.84519 1.52684 1.28745 1.66838 1.21881 0.99253 0.93255 1.01554 1.21632 0.98830 0.95934 0.84328 0.90838 0.90093 0.90177 0.87850 0.87863 0.91776 0.91793 0.96349 0.96776 0.92748 0.88545 0.90030 0.90385 0.88610 0.86816 0.72920 0.89345 0.90157 0.90763 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.22 37.15 0.34 -1.03 16 2 C 0.07 0.74 2.13 -27.88 -0.06 0.68 16 3 H 0.11 1.15 6.07 -51.93 -0.32 0.83 16 4 O -0.33 -4.85 9.43 -45.87 -0.43 -5.28 16 5 C 0.46 7.26 7.93 36.01 0.29 7.55 16 6 O -0.50 -8.83 15.20 -18.75 -0.29 -9.12 16 7 C -0.11 -1.79 5.81 -27.89 -0.16 -1.96 16 8 C -0.09 -1.82 4.44 -26.74 -0.12 -1.94 16 9 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 10 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 11 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 12 C 0.06 1.90 5.47 -17.81 -0.10 1.81 16 13 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 14 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 18 C 0.52 5.87 7.06 -10.98 -0.08 5.80 16 19 O -0.51 -7.80 15.94 -13.97 -0.22 -8.02 16 20 N -0.61 -4.50 2.97 -172.76 -0.51 -5.01 16 21 C 0.10 0.43 5.11 -3.71 -0.02 0.41 16 22 C -0.13 -0.54 5.30 -26.61 -0.14 -0.68 16 23 C -0.08 -0.35 2.59 -91.73 -0.24 -0.59 16 24 C 0.48 3.05 7.63 36.00 0.27 3.32 16 25 O -0.51 -5.09 16.74 -18.75 -0.31 -5.40 16 26 O -0.52 -2.16 13.30 -39.24 -0.52 -2.68 16 27 C -0.12 -0.70 4.65 -26.61 -0.12 -0.82 16 28 C 0.11 0.70 6.44 -3.71 -0.02 0.68 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.41 6.12 -51.93 -0.32 0.10 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 34 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 35 H 0.06 1.33 8.10 -51.92 -0.42 0.91 16 36 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 37 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.10 0.41 4.95 -51.92 -0.26 0.15 16 40 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.27 8.08 -51.93 -0.42 -0.15 16 43 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.41 0.28 9.10 45.56 0.41 0.70 16 45 H 0.09 0.47 8.07 -51.93 -0.42 0.05 16 46 H 0.08 0.64 8.13 -51.93 -0.42 0.22 16 47 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.10 0.83 7.00 -51.93 -0.36 0.46 16 LS Contribution 393.16 15.07 5.92 5.92 Total: -1.00 -38.25 393.16 -7.54 -45.79 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -6.68 Total: -3.41 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -0.60 Total: -2.52 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.26 Total: -32.32 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -1.78 Total: -30.51 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.25 -7.54 -45.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593517521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.589 kcal (2) G-P(sol) polarization free energy of solvation -38.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds