Wall clock time and date at job start Wed Apr 1 2020 00:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.47227 * 2 1 4 4 O 1.45197 * 109.47691 * 239.99707 * 2 1 3 5 5 C 1.34232 * 117.00030 * 89.99782 * 4 2 1 6 6 O 1.20831 * 119.99611 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00208 * 180.02562 * 5 4 2 8 8 C 1.52993 * 109.47106 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47034 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.47192 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00255 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99916 * 180.02562 * 10 9 8 13 13 N 1.31525 * 119.99808 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00392 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.46866 * 90.00044 * 14 12 10 16 16 H 1.48493 * 109.47545 * 210.00571 * 14 12 10 17 17 H 1.48500 * 109.46678 * 330.00511 * 14 12 10 18 18 C 1.50707 * 109.47178 * 119.99933 * 2 1 3 19 19 O 1.21277 * 120.00117 * 112.23721 * 18 2 1 20 20 N 1.34782 * 119.99752 * 292.24178 * 18 2 1 21 21 C 1.46922 * 120.63119 * 355.24494 * 20 18 2 22 22 C 1.53196 * 108.77648 * 233.58657 * 21 20 18 23 23 C 1.53039 * 109.30928 * 305.36370 * 22 21 20 24 24 C 1.50696 * 109.45716 * 181.38344 * 23 22 21 25 25 O 1.20825 * 120.00297 * 239.93161 * 24 23 22 26 26 O 1.34225 * 120.00268 * 59.93421 * 24 23 22 27 27 C 1.53048 * 109.53875 * 61.36690 * 23 22 21 28 28 C 1.46923 * 120.63056 * 175.22044 * 20 18 2 29 29 H 1.08997 * 109.47546 * 186.41283 * 1 2 3 30 30 H 1.09000 * 109.47791 * 306.41551 * 1 2 3 31 31 H 1.09003 * 109.46951 * 66.41617 * 1 2 3 32 32 H 1.08997 * 109.46883 * 300.00305 * 7 5 4 33 33 H 1.09001 * 109.46604 * 60.00136 * 7 5 4 34 34 H 1.08997 * 109.47589 * 299.99983 * 8 7 5 35 35 H 1.09010 * 109.47194 * 60.00316 * 8 7 5 36 36 H 1.08999 * 109.47636 * 299.99961 * 9 8 7 37 37 H 1.09005 * 109.47300 * 60.00575 * 9 8 7 38 38 H 0.96998 * 119.99603 * 180.02562 * 13 12 10 39 39 H 1.09007 * 109.59059 * 353.37550 * 21 20 18 40 40 H 1.08999 * 109.58694 * 113.79773 * 21 20 18 41 41 H 1.08998 * 109.49286 * 65.31612 * 22 21 20 42 42 H 1.09002 * 109.49982 * 185.41395 * 22 21 20 43 43 H 1.09000 * 109.46047 * 301.34265 * 23 22 21 44 44 H 0.96703 * 117.00741 * 179.97438 * 26 24 23 45 45 H 1.09000 * 109.49582 * 178.67869 * 27 23 22 46 46 H 1.09000 * 109.52223 * 58.59716 * 27 23 22 47 47 H 1.09001 * 109.58561 * 246.20391 * 28 20 18 48 48 H 1.09007 * 109.58556 * 6.48351 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1854 5 6 2.2172 0.0639 -2.2811 6 8 1.9981 1.2518 -2.2503 7 6 2.7184 -0.5773 -3.5494 8 6 2.8625 0.4887 -4.6373 9 6 3.3720 -0.1622 -5.9248 10 6 3.5145 0.8879 -6.9963 11 1 3.2669 1.9167 -6.7805 12 6 3.9610 0.5352 -8.2522 13 7 4.0859 1.4517 -9.1871 14 14 4.3900 -1.2442 -8.6254 15 1 3.1836 -1.9492 -9.1281 16 1 5.4564 -1.2903 -9.6577 17 1 4.8709 -1.9075 -7.3869 18 6 2.0323 -0.7104 1.2305 19 8 2.6092 -1.7720 1.1248 20 7 1.8403 -0.1660 2.4485 21 6 1.2367 1.1663 2.5862 22 6 2.1614 2.0409 3.4389 23 6 2.4397 1.3364 4.7687 24 6 3.3216 2.2091 5.6241 25 8 4.4021 1.8065 5.9852 26 8 2.9069 3.4336 5.9849 27 6 3.1439 0.0035 4.5043 28 6 2.2303 -0.8940 3.6637 29 1 -0.3634 -1.0212 0.1148 30 1 -0.3635 0.6100 0.8270 31 1 -0.3633 0.4112 -0.9419 32 1 3.6873 -1.0409 -3.3638 33 1 2.0089 -1.3370 -3.8773 34 1 1.8935 0.9519 -4.8228 35 1 3.5718 1.2488 -4.3096 36 1 4.3412 -0.6251 -5.7391 37 1 2.6630 -0.9225 -6.2528 38 1 4.3997 1.2035 -10.0708 39 1 1.1148 1.6160 1.6007 40 1 0.2653 1.0789 3.0728 41 1 3.1001 2.2021 2.9090 42 1 1.6810 3.0006 3.6292 43 1 1.4983 1.1533 5.2867 44 1 3.5070 3.9563 6.5343 45 1 3.3628 -0.4867 5.4529 46 1 4.0737 0.1835 3.9647 47 1 1.3399 -1.1495 4.2381 48 1 2.7619 -1.8051 3.3891 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593517521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:01 Heat of formation + Delta-G solvation = -253.263223 kcal Electronic energy + Delta-G solvation = -29666.317404 eV Core-core repulsion = 25298.821071 eV Total energy + Delta-G solvation = -4367.496333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.14179 -41.57782 -40.80770 -38.52673 -37.69840 -37.13816 -36.19334 -34.71937 -34.18947 -33.10736 -31.82078 -30.37319 -27.90236 -26.44509 -25.42936 -24.35561 -23.49235 -22.53030 -21.60337 -21.28768 -20.29900 -19.17672 -19.05189 -18.79667 -18.33592 -17.78800 -17.55292 -17.34998 -16.71145 -16.58279 -16.38101 -16.07801 -15.68787 -15.23302 -15.07205 -14.77894 -14.73213 -14.70975 -14.34094 -14.15796 -13.86180 -13.82894 -13.48711 -13.40899 -13.20020 -12.97088 -12.78495 -12.68251 -12.58616 -12.53717 -12.35574 -12.03300 -11.91600 -11.86604 -11.77254 -11.75871 -11.53924 -11.51408 -11.48536 -11.30783 -10.84296 -10.74088 -9.85079 -8.27157 -6.32178 1.07219 1.15728 1.21108 1.34176 1.39817 1.42335 1.54293 2.03019 2.11961 2.39278 3.08158 3.16488 3.52001 3.54092 3.65174 3.77865 3.78741 3.88456 3.95079 4.05726 4.16894 4.23912 4.28400 4.36464 4.48797 4.53621 4.63627 4.65083 4.68491 4.73472 4.78221 4.84222 4.91003 4.92822 5.01298 5.02303 5.06445 5.17772 5.23526 5.41914 5.52581 5.57227 5.60533 5.67788 6.10610 6.30338 6.65561 6.76146 6.92260 6.95712 7.32057 8.89893 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.001841 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.680682 B =15207.380215 C =15602.790955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.058 3.942 3 H 0.113 0.887 4 O -0.343 6.343 5 C 0.469 3.531 6 O -0.529 6.529 7 C -0.108 4.108 8 C -0.082 4.082 9 C -0.012 4.012 10 C -0.536 4.536 11 H 0.026 0.974 12 C -0.001 4.001 13 N -0.954 5.954 14 Si 0.956 3.044 15 H -0.264 1.264 16 H -0.287 1.287 17 H -0.240 1.240 18 C 0.521 3.479 19 O -0.563 6.563 20 N -0.604 5.604 21 C 0.095 3.905 22 C -0.125 4.125 23 C -0.075 4.075 24 C 0.486 3.514 25 O -0.557 6.557 26 O -0.509 6.509 27 C -0.116 4.116 28 C 0.115 3.885 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.029 0.971 37 H 0.031 0.969 38 H 0.266 0.734 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.054 0.946 42 H 0.118 0.882 43 H 0.149 0.851 44 H 0.426 0.574 45 H 0.092 0.908 46 H 0.048 0.952 47 H 0.109 0.891 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.846 -1.961 36.492 38.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.000 4.000 3 H 0.130 0.870 4 O -0.259 6.259 5 C 0.314 3.686 6 O -0.418 6.418 7 C -0.145 4.145 8 C -0.120 4.120 9 C -0.050 4.050 10 C -0.574 4.574 11 H 0.044 0.956 12 C -0.198 4.198 13 N -0.595 5.595 14 Si 0.779 3.221 15 H -0.189 1.189 16 H -0.213 1.213 17 H -0.163 1.163 18 C 0.308 3.692 19 O -0.441 6.441 20 N -0.338 5.338 21 C -0.026 4.026 22 C -0.163 4.163 23 C -0.093 4.093 24 C 0.330 3.670 25 O -0.447 6.447 26 O -0.322 6.322 27 C -0.154 4.154 28 C -0.006 4.006 29 H 0.092 0.908 30 H 0.136 0.864 31 H 0.088 0.912 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.139 0.861 41 H 0.073 0.927 42 H 0.136 0.864 43 H 0.167 0.833 44 H 0.288 0.712 45 H 0.111 0.889 46 H 0.067 0.933 47 H 0.127 0.873 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.546 -2.462 36.181 37.767 hybrid contribution 1.162 0.394 -0.329 1.270 sum -9.384 -2.068 35.853 37.118 Atomic orbital electron populations 1.22237 0.89266 1.04762 1.05437 1.22722 0.98049 0.97358 0.81829 0.86964 1.86652 1.77157 1.42104 1.19991 1.24304 0.73165 0.85706 0.85451 1.90635 1.49136 1.17674 1.84403 1.21572 1.05114 1.00224 0.87590 1.21144 1.00888 0.96582 0.93395 1.19559 0.97046 0.95737 0.92626 1.21501 1.44099 0.95225 0.96574 0.95567 1.26125 0.94831 1.02959 0.95844 1.70094 1.48768 1.36221 1.04407 0.85569 0.78554 0.78970 0.79024 1.18866 1.21315 1.16264 1.20313 0.78718 0.85248 0.84926 1.90724 1.42525 1.24341 1.86473 1.48117 1.61581 1.19480 1.04627 1.22299 0.97698 0.80089 1.02540 1.21957 1.00968 1.00283 0.93120 1.21125 0.99887 0.92647 0.95679 1.23800 0.85242 0.80686 0.77301 1.90746 1.24870 1.74335 1.54796 1.84484 1.52919 1.28009 1.66819 1.21776 0.98068 0.94390 1.01159 1.21734 1.00037 0.94901 0.83959 0.90822 0.86421 0.91156 0.86132 0.85331 0.93065 0.93590 0.95270 0.95021 0.92532 0.88362 0.86116 0.92687 0.86402 0.83344 0.71188 0.88922 0.93276 0.87311 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.22 71.98 0.66 -1.61 16 2 C 0.06 1.24 2.13 29.85 0.06 1.30 16 3 H 0.11 2.27 6.07 -2.39 -0.01 2.26 16 4 O -0.34 -9.70 9.43 -45.12 -0.43 -10.13 16 5 C 0.47 14.39 7.93 71.24 0.56 14.96 16 6 O -0.53 -18.48 15.20 21.95 0.33 -18.15 16 7 C -0.11 -3.23 5.81 29.85 0.17 -3.05 16 8 C -0.08 -3.27 4.44 30.59 0.14 -3.14 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.54 -31.55 9.66 25.60 0.25 -31.30 16 11 H 0.03 1.72 7.99 -2.91 -0.02 1.69 16 12 C 0.00 -0.08 5.47 84.65 0.46 0.38 16 13 N -0.95 -60.95 13.96 21.45 0.30 -60.66 16 14 Si 0.96 44.08 27.47 68.60 1.88 45.96 16 15 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 17 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 18 C 0.52 11.32 7.06 87.66 0.62 11.94 16 19 O -0.56 -17.46 15.94 15.66 0.25 -17.21 16 20 N -0.60 -7.73 2.97 -818.89 -2.43 -10.16 16 21 C 0.09 0.48 5.11 86.36 0.44 0.93 16 22 C -0.13 -0.71 5.30 30.67 0.16 -0.54 16 23 C -0.07 -0.47 2.59 -11.51 -0.03 -0.50 16 24 C 0.49 5.42 7.63 71.23 0.54 5.96 16 25 O -0.56 -11.04 16.74 21.97 0.37 -10.68 16 26 O -0.51 -3.10 13.30 -51.37 -0.68 -3.78 16 27 C -0.12 -1.24 4.65 30.67 0.14 -1.09 16 28 C 0.12 1.24 6.44 86.36 0.56 1.79 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.12 0.75 6.12 -2.39 -0.01 0.73 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 34 H 0.05 2.13 8.10 -2.39 -0.02 2.11 16 35 H 0.05 1.95 8.10 -2.38 -0.02 1.93 16 36 H 0.03 1.28 7.20 -2.39 -0.02 1.27 16 37 H 0.03 1.35 7.57 -2.38 -0.02 1.34 16 38 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 39 H 0.10 0.52 4.95 -2.38 -0.01 0.51 16 40 H 0.12 -0.20 8.14 -2.39 -0.02 -0.21 16 41 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.12 0.21 8.08 -2.39 -0.02 0.20 16 43 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.43 -0.17 9.10 -74.06 -0.67 -0.85 16 45 H 0.09 0.92 8.07 -2.39 -0.02 0.90 16 46 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 47 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.08 1.28 7.00 -2.38 -0.02 1.26 16 Total: -1.00 -87.98 393.16 4.71 -83.27 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.25 Total: 5.97 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 4.87 Total: -4.43 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -2.13 Total: -70.82 kcal Atomic # 8 Polarization: -59.79 SS G_CDS: -0.16 Total: -59.94 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal Total: -87.98 4.71 -83.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593517521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.996 kcal (2) G-P(sol) polarization free energy of solvation -87.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -253.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds