Wall clock time and date at job start Wed Apr 1 2020 00:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47007 * 2 1 4 4 O 1.45192 * 109.47333 * 120.00216 * 2 1 3 5 5 C 1.34231 * 117.00413 * 269.99962 * 4 2 1 6 6 O 1.20835 * 119.99498 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00664 * 179.97438 * 5 4 2 8 8 H 1.09002 * 109.46824 * 59.99718 * 7 5 4 9 9 C 1.52992 * 109.47309 * 180.02562 * 7 5 4 10 10 C 1.53003 * 109.47147 * 179.97438 * 9 7 5 11 11 C 1.53006 * 109.47269 * 300.00224 * 10 9 7 12 12 H 1.08994 * 109.46604 * 299.99864 * 11 10 9 13 13 C 1.50694 * 109.47022 * 179.97438 * 11 10 9 14 14 O 1.20830 * 120.00220 * 359.97438 * 13 11 10 15 15 O 1.34226 * 119.99802 * 179.97438 * 13 11 10 16 16 C 1.52998 * 109.46801 * 59.99569 * 11 10 9 17 17 C 1.52990 * 109.47488 * 299.99993 * 16 11 10 18 18 C 1.50703 * 109.47231 * 240.00265 * 2 1 3 19 19 O 1.21273 * 120.00181 * 245.00042 * 18 2 1 20 20 N 1.34781 * 119.99657 * 64.99810 * 18 2 1 21 21 C 1.46495 * 120.00135 * 0.02562 * 20 18 2 22 22 C 1.46505 * 119.99781 * 180.02562 * 20 18 2 23 23 C 1.50696 * 109.47011 * 89.99787 * 22 20 18 24 24 H 1.07997 * 120.00012 * 0.02562 * 23 22 20 25 25 C 1.37877 * 119.99842 * 179.97438 * 23 22 20 26 26 N 1.31516 * 120.00069 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99806 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.46845 * 90.00621 * 27 25 23 29 29 H 1.48503 * 109.47399 * 210.00111 * 27 25 23 30 30 H 1.48498 * 109.47295 * 330.00717 * 27 25 23 31 31 H 1.08999 * 109.47194 * 60.00211 * 1 2 3 32 32 H 1.09004 * 109.46664 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47096 * 299.99464 * 1 2 3 34 34 H 1.09003 * 109.47294 * 299.99534 * 9 7 5 35 35 H 1.09002 * 109.47523 * 60.00004 * 9 7 5 36 36 H 1.09005 * 109.46951 * 60.00174 * 10 9 7 37 37 H 1.08999 * 109.47203 * 180.02562 * 10 9 7 38 38 H 0.96702 * 117.00465 * 180.02562 * 15 13 11 39 39 H 1.09005 * 109.47058 * 60.00271 * 16 11 10 40 40 H 1.08999 * 109.46568 * 179.97438 * 16 11 10 41 41 H 1.08997 * 109.47523 * 300.00114 * 17 16 11 42 42 H 1.09005 * 109.47711 * 179.97438 * 17 16 11 43 43 H 1.09003 * 109.46916 * 269.99755 * 21 20 18 44 44 H 1.08996 * 109.47229 * 30.00097 * 21 20 18 45 45 H 1.08999 * 109.47029 * 150.00017 * 21 20 18 46 46 H 1.09008 * 109.47050 * 329.99984 * 22 20 18 47 47 H 1.08991 * 109.47237 * 210.00127 * 22 20 18 48 48 H 0.97000 * 119.99838 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1854 5 6 2.2172 0.0639 2.2811 6 8 1.9973 1.2517 2.2506 7 6 2.7183 -0.5773 3.5494 8 1 3.6872 -1.0410 3.3639 9 6 2.8624 0.4887 4.6374 10 6 3.3706 -0.1625 5.9253 11 6 2.3746 -1.2290 6.3850 12 1 1.4056 -0.7654 6.5701 13 6 2.8754 -1.8707 7.6531 14 8 3.9220 -1.5122 8.1392 15 8 2.1590 -2.8406 8.2428 16 6 2.2305 -2.2950 5.2970 17 6 1.7222 -1.6438 4.0092 18 6 2.0323 -0.7104 -1.2305 19 8 2.6529 -1.7466 -1.1216 20 7 1.7918 -0.1940 -2.4520 21 6 1.0426 1.0580 -2.5835 22 6 2.2797 -0.8849 -3.6483 23 6 1.2327 -1.8559 -4.1297 24 1 0.2973 -1.9489 -3.5980 25 6 1.4686 -2.6249 -5.2495 26 7 2.6075 -2.5114 -5.8972 27 14 0.1704 -3.8281 -5.8466 28 1 -0.7310 -3.1461 -6.8097 29 1 0.8311 -4.9775 -6.5158 30 1 -0.6209 -4.3173 -4.6892 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 3.5718 1.2487 4.3097 35 1 1.8934 0.9520 4.8228 36 1 4.3397 -0.6260 5.7402 37 1 3.4729 0.5969 6.7005 38 1 2.5206 -3.2219 9.0546 39 1 3.1995 -2.7585 5.1118 40 1 1.5212 -3.0550 5.6247 41 1 0.7533 -1.1803 4.1942 42 1 1.6200 -2.4032 3.2338 43 1 -0.0216 0.8374 -2.6677 44 1 1.2165 1.6794 -1.7052 45 1 1.3754 1.5885 -3.4756 46 1 3.1944 -1.4267 -3.4074 47 1 2.4854 -0.1548 -4.4310 48 1 3.2814 -1.8863 -5.5874 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593548506.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:09 Heat of formation + Delta-G solvation = -256.652268 kcal Electronic energy + Delta-G solvation = -30275.969753 eV Core-core repulsion = 25908.326460 eV Total energy + Delta-G solvation = -4367.643293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.17956 -41.48278 -40.72355 -38.93701 -37.60002 -37.07908 -36.87749 -35.16340 -33.35902 -32.46606 -31.83273 -29.29092 -27.73231 -26.77051 -25.78111 -24.63389 -23.71886 -23.05265 -21.59177 -20.75653 -20.64507 -19.10612 -19.04011 -18.96743 -18.23535 -17.76423 -17.44595 -17.29859 -16.84300 -16.52897 -16.44255 -15.69393 -15.59673 -15.16970 -14.88071 -14.86452 -14.60299 -14.45802 -14.29774 -13.94787 -13.69112 -13.65865 -13.46981 -13.40842 -13.30250 -13.14773 -12.92542 -12.69919 -12.60125 -12.56251 -12.45340 -12.41369 -12.15706 -11.97647 -11.95931 -11.62867 -11.55788 -11.25076 -11.23443 -11.21374 -10.72889 -10.61535 -9.58723 -8.70751 -6.46198 1.03516 1.20141 1.24704 1.48525 1.52512 1.60376 1.77793 2.12510 2.27459 2.53805 3.08951 3.31455 3.38982 3.48942 3.59132 3.68158 3.78429 3.90460 3.96217 4.09616 4.22586 4.26126 4.27394 4.43735 4.48036 4.49805 4.55422 4.56832 4.67379 4.72931 4.79833 4.80694 4.86776 4.91912 5.04048 5.06794 5.09980 5.13443 5.24574 5.30023 5.35111 5.44224 5.63889 5.78588 6.11136 6.41575 6.44903 6.60389 7.00410 7.12312 7.33825 8.65105 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019311 B = 0.002143 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.631945 B =13061.124829 C =13795.553536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.081 3.919 3 H 0.120 0.880 4 O -0.342 6.342 5 C 0.465 3.535 6 O -0.524 6.524 7 C -0.080 4.080 8 H 0.116 0.884 9 C -0.094 4.094 10 C -0.098 4.098 11 C -0.080 4.080 12 H 0.133 0.867 13 C 0.489 3.511 14 O -0.552 6.552 15 O -0.511 6.511 16 C -0.102 4.102 17 C -0.106 4.106 18 C 0.499 3.501 19 O -0.578 6.578 20 N -0.597 5.597 21 C 0.071 3.929 22 C 0.245 3.755 23 C -0.615 4.615 24 H 0.048 0.952 25 C -0.032 4.032 26 N -0.932 5.932 27 Si 1.121 2.879 28 H -0.262 1.262 29 H -0.283 1.283 30 H -0.277 1.277 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.426 0.574 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.078 0.922 46 H -0.006 1.006 47 H 0.027 0.973 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.079 6.648 26.848 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.023 3.977 3 H 0.138 0.862 4 O -0.258 6.258 5 C 0.309 3.691 6 O -0.413 6.413 7 C -0.099 4.099 8 H 0.134 0.866 9 C -0.131 4.131 10 C -0.135 4.135 11 C -0.099 4.099 12 H 0.151 0.849 13 C 0.333 3.667 14 O -0.443 6.443 15 O -0.325 6.325 16 C -0.139 4.139 17 C -0.144 4.144 18 C 0.286 3.714 19 O -0.458 6.458 20 N -0.329 5.329 21 C -0.071 4.071 22 C 0.124 3.876 23 C -0.654 4.654 24 H 0.067 0.933 25 C -0.230 4.230 26 N -0.568 5.568 27 Si 0.942 3.058 28 H -0.187 1.187 29 H -0.209 1.209 30 H -0.202 1.202 31 H 0.120 0.880 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.288 0.712 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.012 0.988 47 H 0.045 0.955 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.042 5.634 25.462 26.769 hybrid contribution 1.226 0.951 1.242 1.987 sum -4.816 6.585 26.704 27.923 Atomic orbital electron populations 1.22265 0.89686 1.04151 1.05804 1.22468 0.97550 0.96709 0.80956 0.86223 1.86651 1.76734 1.42453 1.19984 1.24488 0.73360 0.85728 0.85527 1.90622 1.48962 1.17205 1.84540 1.21329 1.02281 0.98503 0.87798 0.86610 1.21397 1.03524 0.96019 0.92168 1.21398 0.98068 0.97361 0.96722 1.21201 1.02678 0.96879 0.89153 0.84934 1.23717 0.81058 0.76348 0.85588 1.90728 1.25302 1.62635 1.65636 1.84509 1.53625 1.50110 1.44234 1.21483 1.03323 0.96830 0.92290 1.21523 0.98042 0.96898 0.97920 1.20751 0.80161 0.85274 0.85195 1.90662 1.42723 1.25529 1.86866 1.47891 1.54520 1.25168 1.05340 1.22182 0.96839 0.83941 1.04102 1.18994 0.94322 0.92070 0.82219 1.22520 1.03362 1.25136 1.14360 0.93327 1.27377 1.01411 1.00109 0.94143 1.70900 1.07053 1.37013 1.41882 0.82879 0.72626 0.74152 0.76113 1.18705 1.20888 1.20248 0.87957 0.91960 0.88821 0.90787 0.89880 0.91291 0.90024 0.71217 0.91075 0.88438 0.89556 0.90386 0.90957 0.88647 0.90294 0.98827 0.95541 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 9.27 71.98 0.67 -3.33 16 2 C 0.08 2.55 2.16 29.85 0.06 2.61 16 3 H 0.12 3.33 6.14 -2.39 -0.01 3.32 16 4 O -0.34 -10.74 9.32 -45.09 -0.42 -11.16 16 5 C 0.46 11.65 7.23 71.23 0.51 12.17 16 6 O -0.52 -14.35 15.20 21.94 0.33 -14.01 16 7 C -0.08 -1.39 2.63 -11.54 -0.03 -1.42 16 8 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 9 C -0.09 -1.32 4.49 30.59 0.14 -1.18 16 10 C -0.10 -1.22 4.49 30.60 0.14 -1.08 16 11 C -0.08 -0.84 2.63 -11.54 -0.03 -0.87 16 12 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 13 C 0.49 6.62 7.62 71.23 0.54 7.16 16 14 O -0.55 -11.43 16.74 21.95 0.37 -11.06 16 15 O -0.51 -4.56 13.33 -51.38 -0.68 -5.25 16 16 C -0.10 -1.08 5.13 30.59 0.16 -0.92 16 17 C -0.11 -1.46 5.13 30.59 0.16 -1.30 16 18 C 0.50 21.47 7.10 87.66 0.62 22.09 16 19 O -0.58 -31.10 16.09 15.74 0.25 -30.84 16 20 N -0.60 -25.25 2.86 -851.14 -2.43 -27.68 16 21 C 0.07 2.05 8.96 127.77 1.15 3.19 16 22 C 0.25 13.04 4.52 85.63 0.39 13.42 16 23 C -0.62 -35.33 9.39 25.60 0.24 -35.09 16 24 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 25 C -0.03 -1.87 5.46 84.65 0.46 -1.41 16 26 N -0.93 -57.60 13.65 21.45 0.29 -57.31 16 27 Si 1.12 50.67 29.90 68.60 2.05 52.72 16 28 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 29 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 30 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 31 H 0.10 2.23 5.12 -2.39 -0.01 2.22 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 35 H 0.08 1.09 8.10 -2.39 -0.02 1.07 16 36 H 0.07 0.99 8.10 -2.38 -0.02 0.97 16 37 H 0.08 1.02 8.10 -2.39 -0.02 1.00 16 38 H 0.43 0.64 9.10 -74.06 -0.67 -0.03 16 39 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.10 0.85 8.11 -2.39 -0.02 0.83 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.30 8.11 -2.38 -0.02 1.28 16 43 H 0.07 1.91 7.02 -2.39 -0.02 1.89 16 44 H 0.10 2.06 6.08 -2.39 -0.01 2.04 16 45 H 0.08 2.18 7.89 -2.39 -0.02 2.16 16 46 H -0.01 -0.38 7.29 -2.38 -0.02 -0.40 16 47 H 0.03 1.39 7.76 -2.39 -0.02 1.37 16 48 H 0.26 15.97 7.22 -92.71 -0.67 15.30 16 Total: -1.00 -84.14 393.55 5.35 -78.79 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 0.41 Total: 11.74 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 5.18 Total: 14.05 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -2.14 Total: -84.98 kcal Atomic # 8 Polarization: -72.17 SS G_CDS: -0.15 Total: -72.32 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.05 Total: 52.72 kcal Total: -84.14 5.35 -78.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593548506.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.858 kcal (2) G-P(sol) polarization free energy of solvation -84.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds