Wall clock time and date at job start Wed Apr 1 2020 01:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21277 * 119.99580 * 2 1 4 4 C 1.47042 * 120.00371 * 180.02562 * 2 1 3 5 5 C 1.40029 * 120.01942 * 359.97438 * 4 2 1 6 6 C 1.37577 * 120.10483 * 180.02562 * 5 4 2 7 7 C 1.39460 * 120.14398 * 0.02562 * 6 5 4 8 8 C 1.48243 * 119.98600 * 180.02562 * 7 6 5 9 9 N 1.34116 * 126.68935 * 180.02562 * 8 7 6 10 10 N 1.28985 * 107.26140 * 179.97438 * 9 8 7 11 11 N 1.28717 * 108.96929 * 0.02562 * 10 9 8 12 12 H 0.96996 * 125.33237 * 179.97438 * 11 10 9 13 13 N 1.28871 * 109.34221 * 359.76287 * 11 10 9 14 14 C 1.40108 * 120.03240 * 359.97438 * 7 6 5 15 15 N 1.39529 * 120.05380 * 180.27553 * 14 7 6 16 16 C 1.46845 * 111.00179 * 243.94200 * 15 14 7 17 17 C 1.53034 * 109.52302 * 174.16206 * 16 15 14 18 18 C 1.53124 * 109.28273 * 59.17290 * 17 16 15 19 19 C 1.50695 * 109.52360 * 182.44316 * 18 17 16 20 20 H 1.07996 * 120.00473 * 119.68637 * 19 18 17 21 21 C 1.37882 * 120.00333 * 299.68108 * 19 18 17 22 22 N 1.31516 * 119.99535 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00534 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46816 * 60.00164 * 23 21 19 25 25 H 1.48502 * 109.47203 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47360 * 300.00612 * 23 21 19 27 27 C 1.53119 * 109.15826 * 302.35014 * 18 17 16 28 28 C 1.46841 * 111.00027 * 119.72476 * 15 14 7 29 29 C 1.38395 * 119.89490 * 0.02562 * 14 7 6 30 30 H 1.08998 * 109.47225 * 239.98888 * 1 2 3 31 31 H 1.08994 * 109.47700 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.46605 * 119.99891 * 1 2 3 33 33 H 1.07998 * 119.94407 * 0.02562 * 5 4 2 34 34 H 1.07997 * 119.92987 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.45908 * 294.16950 * 16 15 14 36 36 H 1.08995 * 109.46877 * 54.14127 * 16 15 14 37 37 H 1.08998 * 109.50297 * 299.23457 * 17 16 15 38 38 H 1.09002 * 109.50659 * 179.11396 * 17 16 15 39 39 H 1.09003 * 109.51955 * 62.25016 * 18 17 16 40 40 H 0.96999 * 120.00307 * 179.97438 * 22 21 19 41 41 H 1.09002 * 109.50021 * 297.70709 * 27 18 17 42 42 H 1.08999 * 109.50068 * 177.59657 * 27 18 17 43 43 H 1.09001 * 109.46617 * 305.85796 * 28 15 14 44 44 H 1.09004 * 109.46476 * 65.82539 * 28 15 14 45 45 H 1.08002 * 120.06757 * 179.97438 * 29 14 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 6 2.2423 -1.2734 -0.0006 5 6 1.5426 -2.4863 -0.0006 6 6 2.2288 -3.6788 -0.0006 7 6 3.6234 -3.6843 0.0000 8 6 4.3592 -4.9712 -0.0006 9 7 5.6906 -5.1330 0.0003 10 7 5.9219 -6.4019 -0.0001 11 7 4.7995 -7.0319 -0.0018 12 1 4.6976 -7.9965 -0.0027 13 7 3.8321 -6.1804 0.0026 14 6 4.3294 -2.4741 0.0000 15 7 5.7247 -2.4790 -0.0053 16 6 6.2577 -1.8814 1.2256 17 6 7.7801 -2.0349 1.2509 18 6 8.3787 -1.3416 0.0238 19 6 9.8724 -1.5406 0.0115 20 1 10.3426 -2.0497 -0.8168 21 6 10.6390 -1.0727 1.0577 22 7 10.0664 -0.4530 2.0666 23 14 12.4904 -1.3200 1.0429 24 1 13.0691 -0.6542 -0.1518 25 1 13.0786 -0.7292 2.2718 26 1 12.7954 -2.7726 0.9963 27 6 7.7710 -1.9496 -1.2433 28 6 6.2488 -1.7986 -1.1963 29 6 3.6406 -1.2737 0.0000 30 1 -0.3633 -0.5140 0.8899 31 1 -0.3634 1.0276 0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 0.4626 -2.4857 -0.0006 34 1 1.6863 -4.6126 -0.0010 35 1 5.9989 -0.8230 1.2570 36 1 5.8274 -2.3862 2.0904 37 1 8.0395 -3.0934 1.2333 38 1 8.1771 -1.5773 2.1571 39 1 8.1525 -0.2759 0.0611 40 1 10.6055 -0.1241 2.8028 41 1 8.0302 -3.0068 -1.3000 42 1 8.1613 -1.4311 -2.1190 43 1 5.8120 -2.2433 -2.0905 44 1 5.9900 -0.7406 -1.1536 45 1 4.1820 -0.3392 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602968320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:05 Heat of formation + Delta-G solvation = 123.406899 kcal Electronic energy + Delta-G solvation = -29850.594845 eV Core-core repulsion = 25871.326577 eV Total energy + Delta-G solvation = -3979.268269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.22698 -40.42188 -39.04077 -37.34101 -34.31465 -33.91416 -33.52790 -31.76135 -31.14814 -30.09459 -29.72793 -28.71297 -25.62707 -24.97152 -24.34970 -22.73380 -22.22509 -21.98990 -21.23248 -19.66268 -18.99664 -18.44108 -17.31638 -16.93178 -16.34418 -16.15395 -15.83803 -15.29700 -15.17867 -14.47934 -14.45074 -14.23017 -13.92486 -13.71815 -13.25021 -12.94409 -12.82584 -12.69616 -12.42008 -12.33617 -12.31597 -12.12743 -11.86184 -11.61694 -11.34914 -11.10456 -10.87671 -10.83845 -10.81150 -10.70173 -10.44698 -10.14388 -10.00582 -9.94436 -9.36160 -8.99183 -8.89170 -8.66386 -8.56481 -8.19207 -7.83682 -5.87931 -3.92305 0.20437 1.19497 1.29009 1.96247 2.35416 2.68198 3.39738 3.43730 3.47065 3.66904 3.74727 3.89021 4.18016 4.32660 4.53547 4.69007 4.85084 4.92689 5.12136 5.15590 5.26789 5.33639 5.42203 5.44340 5.60473 5.64664 5.75721 5.83701 5.88812 6.04585 6.10732 6.10935 6.19389 6.34929 6.37006 6.49810 6.58605 6.66860 6.70911 6.96055 7.19340 7.25368 7.34543 7.55681 7.65180 7.81797 7.91962 8.17621 8.24611 8.41640 8.58888 9.10783 9.71349 11.18360 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.003857 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.597861 B = 7258.223264 C = 9521.405477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.391 3.609 3 O -0.452 6.452 4 C -0.149 4.149 5 C -0.088 4.088 6 C -0.092 4.092 7 C 0.027 3.973 8 C 0.214 3.786 9 N -0.195 5.195 10 N -0.062 5.062 11 N -0.239 5.239 12 H 0.470 0.530 13 N -0.305 5.305 14 C 0.135 3.865 15 N -0.487 5.487 16 C 0.067 3.933 17 C -0.100 4.100 18 C 0.049 3.951 19 C -0.507 4.507 20 H 0.053 0.947 21 C 0.061 3.939 22 N -0.893 5.893 23 Si 0.888 3.112 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.278 1.278 27 C -0.103 4.103 28 C 0.068 3.932 29 C -0.094 4.094 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.027 0.973 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.020 0.980 40 H 0.259 0.741 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.029 0.971 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.987 -9.351 -3.684 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.269 3.731 3 O -0.327 6.327 4 C -0.152 4.152 5 C -0.107 4.107 6 C -0.113 4.113 7 C 0.023 3.977 8 C -0.065 4.065 9 N -0.068 5.068 10 N -0.058 5.058 11 N -0.083 5.083 12 H 0.323 0.677 13 N -0.157 5.157 14 C 0.037 3.963 15 N -0.209 5.209 16 C -0.058 4.058 17 C -0.138 4.138 18 C 0.031 3.969 19 C -0.545 4.545 20 H 0.072 0.928 21 C -0.140 4.140 22 N -0.532 5.532 23 Si 0.717 3.283 24 H -0.205 1.205 25 H -0.215 1.215 26 H -0.203 1.203 27 C -0.141 4.141 28 C -0.057 4.057 29 C -0.114 4.114 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.038 0.962 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.047 0.953 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.846 -9.565 -3.521 23.204 hybrid contribution 0.244 0.162 0.131 0.320 sum -20.602 -9.404 -3.390 22.899 Atomic orbital electron populations 1.22243 0.93639 1.05147 1.04536 1.22540 0.91708 0.87645 0.71241 1.90584 1.72189 1.34248 1.35657 1.20549 0.94215 0.94895 1.05533 1.21215 1.00006 0.90785 0.98653 1.21009 0.91981 0.98904 0.99411 1.17497 0.91503 0.86784 1.01957 1.23402 0.88889 0.91504 1.02714 1.76734 1.12838 1.03804 1.13399 1.79155 1.10471 1.01111 1.15015 1.47749 1.01552 1.12064 1.46954 0.67694 1.74834 1.18317 0.99874 1.22724 1.18954 0.91294 0.90434 0.95578 1.59693 1.00408 1.56536 1.04259 1.22333 0.99504 0.95303 0.88643 1.21644 0.88280 1.00699 1.03199 1.18670 0.94297 0.94593 0.89358 1.21157 0.91823 1.36367 1.05148 0.92830 1.24949 0.98151 0.95188 0.95663 1.69865 1.35100 1.38989 1.09251 0.86720 0.86112 0.78375 0.77126 1.20458 1.21477 1.20335 1.21657 0.90707 1.01611 1.00125 1.22175 0.98196 0.94986 0.90388 1.22116 0.93539 0.99413 0.96345 0.88756 0.89741 0.88772 0.84524 0.84299 0.95469 0.92788 0.93137 0.88966 0.96213 0.93148 0.91879 0.93184 0.92535 0.95302 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.26 8.92 36.00 0.32 -0.94 16 2 C 0.39 4.37 7.22 -30.74 -0.22 4.15 16 3 O -0.45 -6.94 17.06 5.56 0.09 -6.84 16 4 C -0.15 -1.73 5.87 -105.06 -0.62 -2.35 16 5 C -0.09 -0.78 9.45 -39.15 -0.37 -1.15 16 6 C -0.09 -0.95 9.67 -39.37 -0.38 -1.33 16 7 C 0.03 0.37 5.90 -104.63 -0.62 -0.24 16 8 C 0.21 3.17 7.89 -156.26 -1.23 1.94 16 9 N -0.20 -3.35 10.91 32.13 0.35 -3.00 16 10 N -0.06 -0.90 13.47 60.35 0.81 -0.09 16 11 N -0.24 -2.48 7.90 60.35 0.48 -2.01 16 12 H 0.47 2.42 8.96 -340.37 -3.05 -0.63 16 13 N -0.30 -3.68 12.07 32.15 0.39 -3.29 16 14 C 0.13 2.11 4.68 -83.60 -0.39 1.72 16 15 N -0.49 -8.90 2.79 -170.99 -0.48 -9.38 16 16 C 0.07 1.36 5.17 -3.84 -0.02 1.34 16 17 C -0.10 -2.41 5.12 -26.65 -0.14 -2.54 16 18 C 0.05 1.24 2.16 -91.65 -0.20 1.05 16 19 C -0.51 -14.15 8.56 -34.44 -0.29 -14.44 16 20 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 21 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 22 N -0.89 -25.83 11.37 55.43 0.63 -25.20 16 23 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C -0.10 -2.22 5.32 -26.65 -0.14 -2.37 16 28 C 0.07 1.28 5.11 -3.84 -0.02 1.26 16 29 C -0.09 -1.37 8.22 -38.93 -0.32 -1.69 16 30 H 0.09 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.08 0.55 8.12 -51.93 -0.42 0.12 16 32 H 0.09 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.14 0.69 7.02 -52.49 -0.37 0.32 16 34 H 0.14 1.14 7.87 -52.49 -0.41 0.73 16 35 H 0.03 0.56 7.54 -51.93 -0.39 0.17 16 36 H 0.05 1.05 8.11 -51.93 -0.42 0.63 16 37 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.09 2.47 6.17 -51.93 -0.32 2.15 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 44 H 0.03 0.54 7.33 -51.93 -0.38 0.16 16 45 H 0.14 2.27 6.69 -52.49 -0.35 1.92 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -33.69 371.67 -10.49 -44.17 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -8.61 Total: -2.73 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -4.73 Total: -13.98 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 2.18 Total: -42.96 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: 0.09 Total: -6.84 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.69 -10.49 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602968320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.582 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds