Wall clock time and date at job start Wed Apr 1 2020 01:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21277 * 119.99580 * 2 1 4 4 C 1.47042 * 120.00371 * 180.02562 * 2 1 3 5 5 C 1.40029 * 120.01942 * 359.97438 * 4 2 1 6 6 C 1.37577 * 120.10483 * 180.02562 * 5 4 2 7 7 C 1.39460 * 120.14398 * 0.02562 * 6 5 4 8 8 C 1.48243 * 119.98600 * 180.02562 * 7 6 5 9 9 N 1.34116 * 126.68935 * 180.02562 * 8 7 6 10 10 N 1.28985 * 107.26140 * 179.97438 * 9 8 7 11 11 N 1.28717 * 108.96929 * 0.02562 * 10 9 8 12 12 H 0.96996 * 125.33237 * 179.97438 * 11 10 9 13 13 N 1.28871 * 109.34221 * 359.76287 * 11 10 9 14 14 C 1.40108 * 120.03240 * 359.97438 * 7 6 5 15 15 N 1.39529 * 120.05380 * 180.27553 * 14 7 6 16 16 C 1.46845 * 111.00179 * 243.94200 * 15 14 7 17 17 C 1.53034 * 109.52302 * 174.16206 * 16 15 14 18 18 C 1.53124 * 109.28273 * 59.17290 * 17 16 15 19 19 C 1.50695 * 109.52360 * 182.44316 * 18 17 16 20 20 H 1.07996 * 120.00473 * 119.68637 * 19 18 17 21 21 C 1.37882 * 120.00333 * 299.68108 * 19 18 17 22 22 N 1.31516 * 119.99535 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00534 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46816 * 60.00164 * 23 21 19 25 25 H 1.48502 * 109.47203 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47360 * 300.00612 * 23 21 19 27 27 C 1.53119 * 109.15826 * 302.35014 * 18 17 16 28 28 C 1.46841 * 111.00027 * 119.72476 * 15 14 7 29 29 C 1.38395 * 119.89490 * 0.02562 * 14 7 6 30 30 H 1.08998 * 109.47225 * 239.98888 * 1 2 3 31 31 H 1.08994 * 109.47700 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.46605 * 119.99891 * 1 2 3 33 33 H 1.07998 * 119.94407 * 0.02562 * 5 4 2 34 34 H 1.07997 * 119.92987 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.45908 * 294.16950 * 16 15 14 36 36 H 1.08995 * 109.46877 * 54.14127 * 16 15 14 37 37 H 1.08998 * 109.50297 * 299.23457 * 17 16 15 38 38 H 1.09002 * 109.50659 * 179.11396 * 17 16 15 39 39 H 1.09003 * 109.51955 * 62.25016 * 18 17 16 40 40 H 0.96999 * 120.00307 * 179.97438 * 22 21 19 41 41 H 1.09002 * 109.50021 * 297.70709 * 27 18 17 42 42 H 1.08999 * 109.50068 * 177.59657 * 27 18 17 43 43 H 1.09001 * 109.46617 * 305.85796 * 28 15 14 44 44 H 1.09004 * 109.46476 * 65.82539 * 28 15 14 45 45 H 1.08002 * 120.06757 * 179.97438 * 29 14 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 6 2.2423 -1.2734 -0.0006 5 6 1.5426 -2.4863 -0.0006 6 6 2.2288 -3.6788 -0.0006 7 6 3.6234 -3.6843 0.0000 8 6 4.3592 -4.9712 -0.0006 9 7 5.6906 -5.1330 0.0003 10 7 5.9219 -6.4019 -0.0001 11 7 4.7995 -7.0319 -0.0018 12 1 4.6976 -7.9965 -0.0027 13 7 3.8321 -6.1804 0.0026 14 6 4.3294 -2.4741 0.0000 15 7 5.7247 -2.4790 -0.0053 16 6 6.2577 -1.8814 1.2256 17 6 7.7801 -2.0349 1.2509 18 6 8.3787 -1.3416 0.0238 19 6 9.8724 -1.5406 0.0115 20 1 10.3426 -2.0497 -0.8168 21 6 10.6390 -1.0727 1.0577 22 7 10.0664 -0.4530 2.0666 23 14 12.4904 -1.3200 1.0429 24 1 13.0691 -0.6542 -0.1518 25 1 13.0786 -0.7292 2.2718 26 1 12.7954 -2.7726 0.9963 27 6 7.7710 -1.9496 -1.2433 28 6 6.2488 -1.7986 -1.1963 29 6 3.6406 -1.2737 0.0000 30 1 -0.3633 -0.5140 0.8899 31 1 -0.3634 1.0276 0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 0.4626 -2.4857 -0.0006 34 1 1.6863 -4.6126 -0.0010 35 1 5.9989 -0.8230 1.2570 36 1 5.8274 -2.3862 2.0904 37 1 8.0395 -3.0934 1.2333 38 1 8.1771 -1.5773 2.1571 39 1 8.1525 -0.2759 0.0611 40 1 10.6055 -0.1241 2.8028 41 1 8.0302 -3.0068 -1.3000 42 1 8.1613 -1.4311 -2.1190 43 1 5.8120 -2.2433 -2.0905 44 1 5.9900 -0.7406 -1.1536 45 1 4.1820 -0.3392 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602968320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:04 Heat of formation + Delta-G solvation = 101.740544 kcal Electronic energy + Delta-G solvation = -29851.534369 eV Core-core repulsion = 25871.326577 eV Total energy + Delta-G solvation = -3980.207792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.25656 -41.49672 -40.19167 -38.67151 -35.81493 -35.21445 -34.55475 -33.50423 -32.13641 -31.54371 -31.01401 -29.84909 -27.44528 -25.93595 -25.49034 -24.23900 -23.75789 -23.18190 -22.58443 -20.65668 -20.23944 -19.98132 -18.47473 -18.23439 -17.95255 -17.24836 -16.91376 -16.58948 -16.29821 -16.05028 -15.75703 -15.46568 -14.97608 -14.86328 -14.77991 -14.42496 -14.35425 -14.15911 -13.66461 -13.56385 -13.24417 -13.09562 -12.94666 -12.89637 -12.84720 -12.72294 -12.46217 -12.26848 -12.16958 -12.06059 -11.91909 -11.86212 -11.80740 -11.37715 -10.87495 -10.83732 -10.69455 -10.36517 -9.93678 -9.63209 -9.30007 -8.05558 -6.18446 -0.74279 0.22378 0.29137 0.99965 1.41259 1.43422 1.50740 1.56774 1.70160 2.45418 2.72408 2.77603 2.82210 3.09823 3.21215 3.32876 3.86252 3.99038 4.09793 4.17498 4.23224 4.28772 4.34281 4.41001 4.49317 4.51870 4.63047 4.69165 4.71353 4.77632 4.79135 4.83792 4.92607 5.05004 5.12016 5.19399 5.23628 5.32354 5.34285 5.39476 5.56168 5.63295 5.71544 5.76704 5.95358 6.04668 6.22895 6.42936 6.48526 6.55050 6.92011 7.36770 7.48578 8.99149 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.003857 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.597861 B = 7258.223264 C = 9521.405477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.391 3.609 3 O -0.509 6.509 4 C -0.156 4.156 5 C -0.053 4.053 6 C -0.080 4.080 7 C 0.019 3.981 8 C 0.200 3.800 9 N -0.246 5.246 10 N -0.081 5.081 11 N -0.205 5.205 12 H 0.491 0.509 13 N -0.284 5.284 14 C 0.103 3.897 15 N -0.484 5.484 16 C 0.084 3.916 17 C -0.085 4.085 18 C 0.048 3.952 19 C -0.531 4.531 20 H 0.050 0.950 21 C 0.013 3.987 22 N -0.918 5.918 23 Si 0.953 3.047 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.272 1.272 27 C -0.092 4.092 28 C 0.078 3.922 29 C -0.111 4.111 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.194 0.806 34 H 0.172 0.828 35 H 0.015 0.985 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.060 0.940 39 H -0.013 1.013 40 H 0.259 0.741 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.022 0.978 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.740 -11.623 -4.285 28.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.272 3.728 3 O -0.388 6.388 4 C -0.158 4.158 5 C -0.070 4.070 6 C -0.100 4.100 7 C 0.015 3.985 8 C -0.079 4.079 9 N -0.117 5.117 10 N -0.077 5.077 11 N -0.055 5.055 12 H 0.350 0.650 13 N -0.138 5.138 14 C 0.006 3.994 15 N -0.205 5.205 16 C -0.042 4.042 17 C -0.123 4.123 18 C 0.030 3.970 19 C -0.569 4.569 20 H 0.069 0.931 21 C -0.186 4.186 22 N -0.558 5.558 23 Si 0.779 3.221 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.198 1.198 27 C -0.130 4.130 28 C -0.048 4.048 29 C -0.131 4.131 30 H 0.143 0.857 31 H 0.100 0.900 32 H 0.145 0.855 33 H 0.211 0.789 34 H 0.189 0.811 35 H 0.033 0.967 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.005 0.995 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.040 0.960 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -24.613 -11.877 -4.134 27.640 hybrid contribution 1.265 0.761 0.315 1.510 sum -23.348 -11.116 -3.819 26.139 Atomic orbital electron populations 1.22310 0.88925 1.06115 1.07345 1.23343 0.94081 0.86380 0.69013 1.90583 1.73726 1.35945 1.38521 1.20818 0.92928 0.96826 1.05239 1.21765 1.02403 0.88543 0.94329 1.21410 0.90240 1.00839 0.97514 1.17688 0.93034 0.85545 1.02277 1.23621 0.88390 0.92586 1.03317 1.76708 1.14633 1.05013 1.15333 1.79084 1.11647 1.00826 1.16101 1.47816 1.00475 1.13065 1.44164 0.65039 1.74789 1.17978 0.99058 1.21930 1.18886 0.89530 0.91766 0.99222 1.59505 1.02842 1.55548 1.02611 1.21978 0.96804 0.94893 0.90546 1.21324 0.91089 0.98711 1.01196 1.18612 0.93769 0.92900 0.91737 1.21520 0.93399 1.36643 1.05303 0.93144 1.25733 1.02737 0.94853 0.95241 1.70018 1.36623 1.39490 1.09666 0.85695 0.80594 0.78472 0.77385 1.19679 1.20909 1.19752 1.21473 0.92887 1.00395 0.98278 1.22012 0.96048 0.94987 0.91767 1.21895 0.95318 0.97700 0.98205 0.85678 0.90040 0.85521 0.78924 0.81085 0.96693 0.92143 0.94856 0.92150 0.99526 0.93161 0.92852 0.92857 0.90571 0.95998 0.87398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.54 8.92 71.24 0.64 -0.90 16 2 C 0.39 8.02 7.22 28.00 0.20 8.22 16 3 O -0.51 -16.04 17.06 -3.02 -0.05 -16.09 16 4 C -0.16 -3.28 5.87 -20.15 -0.12 -3.39 16 5 C -0.05 -0.66 9.45 22.55 0.21 -0.44 16 6 C -0.08 -1.27 9.67 22.41 0.22 -1.06 16 7 C 0.02 0.49 5.90 -19.87 -0.12 0.37 16 8 C 0.20 5.64 7.89 137.26 1.08 6.72 16 9 N -0.25 -8.44 10.91 -52.26 -0.57 -9.01 16 10 N -0.08 -2.32 13.47 37.02 0.50 -1.82 16 11 N -0.21 -3.82 7.90 37.02 0.29 -3.53 16 12 H 0.49 3.71 8.96 -347.54 -3.12 0.59 16 13 N -0.28 -6.05 12.07 -52.21 -0.63 -6.68 16 14 C 0.10 3.24 4.68 38.41 0.18 3.42 16 15 N -0.48 -18.51 2.79 -694.88 -1.94 -20.45 16 16 C 0.08 3.64 5.17 86.32 0.45 4.09 16 17 C -0.08 -4.39 5.12 30.65 0.16 -4.23 16 18 C 0.05 2.61 2.16 -11.46 -0.02 2.59 16 19 C -0.53 -31.08 8.56 25.60 0.22 -30.86 16 20 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 21 C 0.01 0.73 5.31 84.66 0.45 1.18 16 22 N -0.92 -55.58 11.37 21.45 0.24 -55.34 16 23 Si 0.95 45.81 29.54 68.60 2.03 47.84 16 24 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 26 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 27 C -0.09 -4.22 5.32 30.64 0.16 -4.05 16 28 C 0.08 3.07 5.11 86.32 0.44 3.51 16 29 C -0.11 -3.31 8.22 22.69 0.19 -3.12 16 30 H 0.13 0.32 8.08 -2.39 -0.02 0.30 16 31 H 0.08 0.78 8.12 -2.39 -0.02 0.76 16 32 H 0.13 0.28 8.08 -2.39 -0.02 0.26 16 33 H 0.19 0.31 7.02 -2.91 -0.02 0.29 16 34 H 0.17 1.72 7.87 -2.91 -0.02 1.69 16 35 H 0.01 0.67 7.54 -2.38 -0.02 0.65 16 36 H 0.06 2.50 8.11 -2.39 -0.02 2.48 16 37 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 3.48 6.17 -2.39 -0.01 3.47 16 39 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 40 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.05 2.51 8.14 -2.39 -0.02 2.50 16 42 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.08 2.68 8.11 -2.39 -0.02 2.66 16 44 H 0.02 0.88 7.33 -2.39 -0.02 0.86 16 45 H 0.11 3.86 6.69 -2.91 -0.02 3.85 16 Total: -1.00 -81.11 371.67 2.13 -78.98 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -2.07 Total: 4.07 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 4.33 Total: -17.97 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -2.11 Total: -96.83 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.05 Total: -16.09 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -81.11 2.13 -78.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602968320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.724 kcal (2) G-P(sol) polarization free energy of solvation -81.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds