Wall clock time and date at job start Wed Apr 1 2020 01:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21338 * 119.99559 * 2 1 4 4 C 1.46513 * 120.00257 * 180.02562 * 2 1 3 5 5 C 1.40158 * 120.12351 * 4.95037 * 4 2 1 6 6 C 1.36370 * 120.14792 * 179.97438 * 5 4 2 7 7 C 1.39765 * 120.40202 * 0.02562 * 6 5 4 8 8 C 1.48361 * 119.87204 * 179.97438 * 7 6 5 9 9 N 1.34093 * 126.67699 * 179.68392 * 8 7 6 10 10 N 1.28991 * 107.26320 * 179.87106 * 9 8 7 11 11 N 1.28732 * 108.95390 * 0.39833 * 10 9 8 12 12 H 0.96992 * 125.33292 * 179.76669 * 11 10 9 13 13 N 1.28871 * 109.32981 * 359.74829 * 11 10 9 14 14 C 1.39092 * 120.24908 * 0.02562 * 7 6 5 15 15 C 1.38715 * 119.84492 * 359.97438 * 14 7 6 16 16 N 1.38750 * 120.19826 * 180.02562 * 15 14 7 17 17 C 1.46844 * 110.99855 * 64.19918 * 16 15 14 18 18 C 1.53037 * 109.52475 * 174.16462 * 17 16 15 19 19 C 1.53118 * 109.27930 * 59.17792 * 18 17 16 20 20 C 1.53122 * 109.16117 * 302.34744 * 19 18 17 21 21 H 1.09006 * 109.50261 * 297.67153 * 20 19 18 22 22 C 1.50698 * 109.50410 * 177.59764 * 20 19 18 23 23 H 1.07998 * 119.99919 * 245.28004 * 22 20 19 24 24 C 1.37872 * 120.00149 * 65.27298 * 22 20 19 25 25 N 1.31520 * 120.00133 * 5.40914 * 24 22 20 26 26 Si 1.86798 * 120.00061 * 185.40303 * 24 22 20 27 27 H 1.48500 * 109.47516 * 85.00235 * 26 24 22 28 28 H 1.48501 * 109.47149 * 205.00217 * 26 24 22 29 29 H 1.48505 * 109.47098 * 325.00095 * 26 24 22 30 30 C 1.46852 * 111.00060 * 299.99097 * 16 15 14 31 31 H 1.09001 * 109.46946 * 269.99645 * 1 2 3 32 32 H 1.09002 * 109.47783 * 29.99732 * 1 2 3 33 33 H 1.08996 * 109.47403 * 150.00281 * 1 2 3 34 34 H 1.07997 * 119.93242 * 0.02562 * 5 4 2 35 35 H 1.07998 * 119.79950 * 180.27803 * 6 5 4 36 36 H 1.07994 * 120.07639 * 180.02562 * 14 7 6 37 37 H 1.09005 * 109.46673 * 294.17521 * 17 16 15 38 38 H 1.08997 * 109.46604 * 54.14424 * 17 16 15 39 39 H 1.09000 * 109.50719 * 179.12221 * 18 17 16 40 40 H 1.09003 * 109.49962 * 299.24012 * 18 17 16 41 41 H 1.08989 * 109.52564 * 62.25605 * 19 18 17 42 42 H 1.09004 * 109.52407 * 182.44368 * 19 18 17 43 43 H 0.96998 * 119.99820 * 179.97438 * 25 24 22 44 44 H 1.09005 * 109.46035 * 305.85651 * 30 16 15 45 45 H 1.09003 * 109.45998 * 65.81986 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0509 0.0000 4 6 2.2396 -1.2688 -0.0006 5 6 1.5454 -2.4818 -0.1057 6 6 2.2269 -3.6631 -0.1068 7 6 3.6206 -3.6757 -0.0028 8 6 4.3500 -4.9676 -0.0047 9 7 5.6773 -5.1381 0.0815 10 7 5.9031 -6.4077 0.0480 11 7 4.7812 -7.0291 -0.0630 12 1 4.6759 -7.9920 -0.1128 13 7 3.8200 -6.1714 -0.0971 14 6 4.3261 -2.4817 0.1034 15 6 3.6434 -1.2743 0.1056 16 7 4.3399 -0.0789 0.2107 17 6 5.2104 0.1271 -0.9539 18 6 5.8496 1.5153 -0.8755 19 6 6.6615 1.6257 0.4180 20 6 5.7419 1.3594 1.6130 21 1 4.9601 2.1182 1.6468 22 6 6.5454 1.4079 2.8870 23 1 6.6654 0.5160 3.4840 24 6 7.1274 2.5909 3.2903 25 7 6.8946 3.6996 2.6223 26 14 8.2467 2.6189 4.7855 27 1 9.6251 2.2447 4.3793 28 1 8.2566 3.9837 5.3709 29 1 7.7481 1.6508 5.7953 30 6 5.1058 -0.0243 1.4624 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3635 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 0.4685 -2.4811 -0.1869 35 1 1.6866 -4.5943 -0.1927 36 1 5.4031 -2.4947 0.1832 37 1 5.9920 -0.6326 -0.9620 38 1 4.6200 0.0501 -1.8668 39 1 6.5078 1.6619 -1.7319 40 1 5.0691 2.2762 -0.8812 41 1 7.4663 0.8908 0.4068 42 1 7.0832 2.6276 0.4991 43 1 7.3038 4.5319 2.9063 44 1 4.4393 -0.2113 2.3045 45 1 5.8879 -0.7834 1.4430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602969340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:08 Heat of formation + Delta-G solvation = 126.963252 kcal Electronic energy + Delta-G solvation = -29708.354862 eV Core-core repulsion = 25729.240809 eV Total energy + Delta-G solvation = -3979.114054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.66062 -40.39522 -38.26618 -37.58232 -34.63553 -34.07880 -33.52872 -32.00491 -31.46476 -29.84861 -29.41821 -28.79490 -25.15630 -24.92190 -24.86916 -23.63267 -22.49069 -21.46495 -20.88943 -19.77931 -19.38011 -18.48059 -17.34987 -17.24690 -16.31635 -15.90270 -15.63984 -15.01254 -14.82580 -14.50914 -14.35785 -14.07581 -13.95497 -13.91356 -13.37605 -12.98625 -12.93769 -12.51624 -12.41482 -12.32111 -12.21787 -12.10111 -11.93811 -11.74689 -11.56248 -11.47125 -11.16652 -10.98010 -10.88236 -10.69805 -10.64685 -10.09919 -9.84974 -9.47826 -9.35418 -9.06855 -8.89116 -8.74145 -8.51496 -8.23868 -7.70455 -5.91826 -3.95247 0.26618 0.92619 1.28437 1.91031 1.99947 2.78835 3.36776 3.42896 3.45373 3.45918 3.76290 3.97602 4.24514 4.24869 4.53597 4.76506 4.95309 5.02600 5.17133 5.20641 5.33453 5.39933 5.44787 5.47908 5.50902 5.71357 5.75656 5.83406 5.94576 6.06355 6.08864 6.15906 6.21678 6.25726 6.35279 6.50533 6.52597 6.63244 6.76379 6.79918 7.01759 7.26104 7.43633 7.60482 7.82744 7.91980 7.93473 7.98891 8.11415 8.22180 8.53880 9.09370 9.67929 11.16672 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009556 B = 0.003744 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.245160 B = 7476.647747 C = 9359.676007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.374 3.626 3 O -0.394 6.394 4 C -0.134 4.134 5 C -0.079 4.079 6 C -0.106 4.106 7 C 0.011 3.989 8 C 0.220 3.780 9 N -0.261 5.261 10 N -0.049 5.049 11 N -0.230 5.230 12 H 0.475 0.525 13 N -0.293 5.293 14 C -0.119 4.119 15 C 0.165 3.835 16 N -0.493 5.493 17 C 0.074 3.926 18 C -0.115 4.115 19 C -0.106 4.106 20 C 0.057 3.943 21 H 0.044 0.956 22 C -0.516 4.516 23 H 0.053 0.947 24 C 0.065 3.935 25 N -0.886 5.886 26 Si 0.887 3.113 27 H -0.281 1.281 28 H -0.288 1.288 29 H -0.276 1.276 30 C 0.074 3.926 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.029 0.971 38 H 0.058 0.942 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.032 0.968 42 H 0.078 0.922 43 H 0.259 0.741 44 H 0.059 0.941 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.311 -19.082 -8.930 24.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.246 3.754 3 O -0.265 6.265 4 C -0.137 4.137 5 C -0.097 4.097 6 C -0.126 4.126 7 C 0.007 3.993 8 C -0.060 4.060 9 N -0.134 5.134 10 N -0.044 5.044 11 N -0.075 5.075 12 H 0.329 0.671 13 N -0.145 5.145 14 C -0.142 4.142 15 C 0.069 3.931 16 N -0.214 5.214 17 C -0.052 4.052 18 C -0.153 4.153 19 C -0.144 4.144 20 C 0.038 3.962 21 H 0.063 0.937 22 C -0.554 4.554 23 H 0.071 0.929 24 C -0.136 4.136 25 N -0.524 5.524 26 Si 0.715 3.285 27 H -0.207 1.207 28 H -0.213 1.213 29 H -0.201 1.201 30 C -0.051 4.051 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.157 0.843 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -11.697 -18.269 -8.896 23.446 hybrid contribution 0.807 -1.295 0.833 1.739 sum -10.890 -19.564 -8.063 23.798 Atomic orbital electron populations 1.22249 0.94737 1.04190 1.04363 1.22084 0.90780 0.88005 0.74482 1.90725 1.71271 1.33112 1.31346 1.20856 0.93218 0.95454 1.04126 1.21040 1.00164 0.90776 0.97733 1.20717 0.92079 0.98981 1.00800 1.17317 0.92282 0.86474 1.03213 1.23781 0.88307 0.92608 1.01293 1.76196 1.14124 1.05871 1.17219 1.78959 1.10542 1.00428 1.14474 1.47737 1.01513 1.12410 1.45875 0.67128 1.74913 1.17977 0.99448 1.22176 1.22000 1.01593 0.91388 0.99219 1.19118 0.92254 0.89233 0.92505 1.59475 1.29851 1.27771 1.04296 1.22036 0.93510 0.98381 0.91279 1.21651 0.99262 0.95302 0.99097 1.21604 0.97534 1.02320 0.92952 1.18654 0.94309 0.90186 0.93038 0.93735 1.21095 1.32022 0.95324 1.07006 0.92915 1.24912 0.96569 0.95536 0.96609 1.69959 1.43436 0.98820 1.40189 0.86693 0.81408 0.77087 0.83284 1.20684 1.21348 1.20069 1.22435 0.94122 1.01112 0.87388 0.88969 0.89761 0.90205 0.84269 0.84790 0.84188 0.95290 0.92323 0.93336 0.91459 0.94918 0.90392 0.93086 0.92200 0.95684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.82 9.84 36.01 0.35 -1.47 16 2 C 0.37 5.35 7.19 -30.98 -0.22 5.13 16 3 O -0.39 -7.59 15.78 5.51 0.09 -7.50 16 4 C -0.13 -1.85 5.89 -104.88 -0.62 -2.46 16 5 C -0.08 -0.79 9.32 -39.53 -0.37 -1.16 16 6 C -0.11 -1.10 9.62 -39.68 -0.38 -1.48 16 7 C 0.01 0.15 5.88 -104.84 -0.62 -0.47 16 8 C 0.22 2.81 7.93 -156.27 -1.24 1.58 16 9 N -0.26 -3.67 12.21 32.15 0.39 -3.28 16 10 N -0.05 -0.56 13.47 60.35 0.81 0.26 16 11 N -0.23 -1.83 7.90 60.35 0.48 -1.35 16 12 H 0.47 1.29 8.96 -340.37 -3.05 -1.76 16 13 N -0.29 -3.01 12.06 32.16 0.39 -2.63 16 14 C -0.12 -1.80 8.32 -39.09 -0.33 -2.13 16 15 C 0.16 2.70 4.67 -83.60 -0.39 2.31 16 16 N -0.49 -9.57 2.56 -170.90 -0.44 -10.00 16 17 C 0.07 1.36 5.16 -3.84 -0.02 1.34 16 18 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 19 C -0.11 -2.54 5.09 -26.61 -0.14 -2.68 16 20 C 0.06 1.47 2.14 -91.69 -0.20 1.27 16 21 H 0.04 1.31 8.12 -51.93 -0.42 0.88 16 22 C -0.52 -14.46 8.49 -34.44 -0.29 -14.75 16 23 H 0.05 1.46 7.75 -52.49 -0.41 1.05 16 24 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 25 N -0.89 -25.97 11.98 55.43 0.66 -25.31 16 26 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 30 C 0.07 1.64 4.33 -3.83 -0.02 1.62 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.50 6.28 -51.93 -0.33 0.17 16 34 H 0.14 0.89 6.23 -52.49 -0.33 0.57 16 35 H 0.13 1.10 7.86 -52.49 -0.41 0.69 16 36 H 0.14 2.27 6.92 -52.49 -0.36 1.91 16 37 H 0.03 0.52 7.54 -51.93 -0.39 0.13 16 38 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 2.08 6.79 -51.93 -0.35 1.73 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 45 H 0.02 0.55 7.32 -51.93 -0.38 0.17 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -34.14 371.04 -10.29 -44.43 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -8.52 Total: -2.83 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -4.72 Total: -14.09 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 2.30 Total: -42.31 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.09 Total: -7.50 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.14 -10.29 -44.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602969340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.393 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds