Wall clock time and date at job start Wed Apr 1 2020 01:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21338 * 119.99559 * 2 1 4 4 C 1.46513 * 120.00257 * 180.02562 * 2 1 3 5 5 C 1.40158 * 120.12351 * 4.95037 * 4 2 1 6 6 C 1.36370 * 120.14792 * 179.97438 * 5 4 2 7 7 C 1.39765 * 120.40202 * 0.02562 * 6 5 4 8 8 C 1.48361 * 119.87204 * 179.97438 * 7 6 5 9 9 N 1.34093 * 126.67699 * 179.68392 * 8 7 6 10 10 N 1.28991 * 107.26320 * 179.87106 * 9 8 7 11 11 N 1.28732 * 108.95390 * 0.39833 * 10 9 8 12 12 H 0.96992 * 125.33292 * 179.76669 * 11 10 9 13 13 N 1.28871 * 109.32981 * 359.74829 * 11 10 9 14 14 C 1.39092 * 120.24908 * 0.02562 * 7 6 5 15 15 C 1.38715 * 119.84492 * 359.97438 * 14 7 6 16 16 N 1.38750 * 120.19826 * 180.02562 * 15 14 7 17 17 C 1.46844 * 110.99855 * 64.19918 * 16 15 14 18 18 C 1.53037 * 109.52475 * 174.16462 * 17 16 15 19 19 C 1.53118 * 109.27930 * 59.17792 * 18 17 16 20 20 C 1.53122 * 109.16117 * 302.34744 * 19 18 17 21 21 H 1.09006 * 109.50261 * 297.67153 * 20 19 18 22 22 C 1.50698 * 109.50410 * 177.59764 * 20 19 18 23 23 H 1.07998 * 119.99919 * 245.28004 * 22 20 19 24 24 C 1.37872 * 120.00149 * 65.27298 * 22 20 19 25 25 N 1.31520 * 120.00133 * 5.40914 * 24 22 20 26 26 Si 1.86798 * 120.00061 * 185.40303 * 24 22 20 27 27 H 1.48500 * 109.47516 * 85.00235 * 26 24 22 28 28 H 1.48501 * 109.47149 * 205.00217 * 26 24 22 29 29 H 1.48505 * 109.47098 * 325.00095 * 26 24 22 30 30 C 1.46852 * 111.00060 * 299.99097 * 16 15 14 31 31 H 1.09001 * 109.46946 * 269.99645 * 1 2 3 32 32 H 1.09002 * 109.47783 * 29.99732 * 1 2 3 33 33 H 1.08996 * 109.47403 * 150.00281 * 1 2 3 34 34 H 1.07997 * 119.93242 * 0.02562 * 5 4 2 35 35 H 1.07998 * 119.79950 * 180.27803 * 6 5 4 36 36 H 1.07994 * 120.07639 * 180.02562 * 14 7 6 37 37 H 1.09005 * 109.46673 * 294.17521 * 17 16 15 38 38 H 1.08997 * 109.46604 * 54.14424 * 17 16 15 39 39 H 1.09000 * 109.50719 * 179.12221 * 18 17 16 40 40 H 1.09003 * 109.49962 * 299.24012 * 18 17 16 41 41 H 1.08989 * 109.52564 * 62.25605 * 19 18 17 42 42 H 1.09004 * 109.52407 * 182.44368 * 19 18 17 43 43 H 0.96998 * 119.99820 * 179.97438 * 25 24 22 44 44 H 1.09005 * 109.46035 * 305.85651 * 30 16 15 45 45 H 1.09003 * 109.45998 * 65.81986 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0509 0.0000 4 6 2.2396 -1.2688 -0.0006 5 6 1.5454 -2.4818 -0.1057 6 6 2.2269 -3.6631 -0.1068 7 6 3.6206 -3.6757 -0.0028 8 6 4.3500 -4.9676 -0.0047 9 7 5.6773 -5.1381 0.0815 10 7 5.9031 -6.4077 0.0480 11 7 4.7812 -7.0291 -0.0630 12 1 4.6759 -7.9920 -0.1128 13 7 3.8200 -6.1714 -0.0971 14 6 4.3261 -2.4817 0.1034 15 6 3.6434 -1.2743 0.1056 16 7 4.3399 -0.0789 0.2107 17 6 5.2104 0.1271 -0.9539 18 6 5.8496 1.5153 -0.8755 19 6 6.6615 1.6257 0.4180 20 6 5.7419 1.3594 1.6130 21 1 4.9601 2.1182 1.6468 22 6 6.5454 1.4079 2.8870 23 1 6.6654 0.5160 3.4840 24 6 7.1274 2.5909 3.2903 25 7 6.8946 3.6996 2.6223 26 14 8.2467 2.6189 4.7855 27 1 9.6251 2.2447 4.3793 28 1 8.2566 3.9837 5.3709 29 1 7.7481 1.6508 5.7953 30 6 5.1058 -0.0243 1.4624 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3635 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 0.4685 -2.4811 -0.1869 35 1 1.6866 -4.5943 -0.1927 36 1 5.4031 -2.4947 0.1832 37 1 5.9920 -0.6326 -0.9620 38 1 4.6200 0.0501 -1.8668 39 1 6.5078 1.6619 -1.7319 40 1 5.0691 2.2762 -0.8812 41 1 7.4663 0.8908 0.4068 42 1 7.0832 2.6276 0.4991 43 1 7.3038 4.5319 2.9063 44 1 4.4393 -0.2113 2.3045 45 1 5.8879 -0.7834 1.4430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602969340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:07 Heat of formation + Delta-G solvation = 104.715773 kcal Electronic energy + Delta-G solvation = -29709.319585 eV Core-core repulsion = 25729.240809 eV Total energy + Delta-G solvation = -3980.078777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.51691 -41.58369 -39.60475 -38.86045 -35.81088 -35.44360 -34.63989 -33.75055 -32.46107 -31.74908 -30.40983 -29.93100 -26.94806 -26.10051 -25.87687 -25.08065 -23.43213 -23.25190 -22.21429 -20.78733 -20.36739 -20.11727 -18.70479 -18.19381 -17.91406 -17.14955 -16.83439 -16.54915 -16.13105 -15.98703 -15.50773 -15.40311 -15.07491 -15.06283 -14.94002 -14.43635 -14.29897 -14.18031 -13.72754 -13.71082 -13.47292 -13.17354 -12.90415 -12.83705 -12.80905 -12.73207 -12.59925 -12.44825 -12.40396 -12.12397 -11.96326 -11.88596 -11.77065 -11.43189 -10.92443 -10.75607 -10.53953 -10.41866 -9.91633 -9.64521 -9.18358 -8.10815 -6.22645 -0.71897 0.06696 0.27654 0.93698 1.37984 1.39726 1.40933 1.50559 1.77566 2.41843 2.55715 2.76768 2.89121 3.11796 3.18387 3.29121 3.83647 4.03041 4.03777 4.12227 4.19083 4.26481 4.32741 4.37062 4.42836 4.51789 4.53757 4.63490 4.67335 4.79289 4.81467 4.88778 4.92283 4.99341 5.12118 5.14971 5.23678 5.30663 5.36465 5.43737 5.51756 5.58860 5.61635 5.70127 5.90251 6.04678 6.09305 6.40768 6.55114 6.89670 6.94081 7.05906 7.44423 8.97311 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009556 B = 0.003744 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.245160 B = 7476.647747 C = 9359.676007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.371 3.629 3 O -0.462 6.462 4 C -0.148 4.148 5 C -0.051 4.051 6 C -0.089 4.089 7 C 0.011 3.989 8 C 0.204 3.796 9 N -0.301 5.301 10 N -0.058 5.058 11 N -0.195 5.195 12 H 0.496 0.504 13 N -0.277 5.277 14 C -0.132 4.132 15 C 0.130 3.870 16 N -0.500 5.500 17 C 0.079 3.921 18 C -0.107 4.107 19 C -0.097 4.097 20 C 0.058 3.942 21 H -0.004 1.004 22 C -0.538 4.538 23 H 0.050 0.950 24 C 0.016 3.984 25 N -0.916 5.916 26 Si 0.954 3.046 27 H -0.273 1.273 28 H -0.282 1.282 29 H -0.269 1.269 30 C 0.094 3.906 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.191 0.809 35 H 0.169 0.831 36 H 0.118 0.882 37 H 0.034 0.966 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.046 0.954 41 H 0.031 0.969 42 H 0.045 0.955 43 H 0.261 0.739 44 H 0.045 0.955 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.717 -22.611 -9.482 28.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.248 3.752 3 O -0.336 6.336 4 C -0.151 4.151 5 C -0.069 4.069 6 C -0.109 4.109 7 C 0.007 3.993 8 C -0.076 4.076 9 N -0.173 5.173 10 N -0.053 5.053 11 N -0.047 5.047 12 H 0.356 0.644 13 N -0.130 5.130 14 C -0.155 4.155 15 C 0.034 3.966 16 N -0.220 5.220 17 C -0.047 4.047 18 C -0.144 4.144 19 C -0.135 4.135 20 C 0.040 3.960 21 H 0.015 0.985 22 C -0.576 4.576 23 H 0.068 0.932 24 C -0.183 4.183 25 N -0.555 5.555 26 Si 0.780 3.220 27 H -0.198 1.198 28 H -0.208 1.208 29 H -0.194 1.194 30 C -0.032 4.032 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.139 0.861 34 H 0.208 0.792 35 H 0.187 0.813 36 H 0.136 0.864 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -14.115 -21.857 -9.458 27.684 hybrid contribution 1.454 -0.396 0.975 1.795 sum -12.661 -22.253 -8.483 26.971 Atomic orbital electron populations 1.22268 0.90230 1.06252 1.05840 1.22988 0.93213 0.87146 0.71870 1.90720 1.73003 1.35147 1.34772 1.21095 0.92167 0.97111 1.04695 1.21509 1.02284 0.88663 0.94482 1.21133 0.90808 1.00559 0.98416 1.17463 0.93512 0.85750 1.02556 1.23786 0.88099 0.93266 1.02427 1.76190 1.15291 1.07095 1.18735 1.78907 1.11389 0.99918 1.15085 1.47821 1.00414 1.13359 1.43098 0.64426 1.74859 1.17944 0.98739 1.21423 1.21715 1.00618 0.92101 1.01071 1.19211 0.93409 0.88187 0.95757 1.59292 1.29244 1.30523 1.02976 1.21979 0.93886 0.96841 0.91968 1.21539 0.98648 0.96278 0.97970 1.21396 0.97493 1.00155 0.94439 1.18510 0.93205 0.91017 0.93314 0.98537 1.21451 1.32634 0.95485 1.08068 0.93181 1.25727 0.97861 0.95052 0.99653 1.70105 1.44285 0.99331 1.41802 0.85634 0.79441 0.77299 0.79667 1.19844 1.20755 1.19364 1.21982 0.93807 0.98411 0.89006 0.87460 0.89809 0.86076 0.79242 0.81329 0.86442 0.94816 0.90390 0.90637 0.93500 0.94998 0.93605 0.93012 0.93627 0.96008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.85 9.84 71.24 0.70 -2.15 16 2 C 0.37 10.32 7.19 27.84 0.20 10.52 16 3 O -0.46 -18.59 15.78 -3.21 -0.05 -18.64 16 4 C -0.15 -3.85 5.89 -20.03 -0.12 -3.97 16 5 C -0.05 -0.80 9.32 22.30 0.21 -0.59 16 6 C -0.09 -1.47 9.62 22.20 0.21 -1.26 16 7 C 0.01 0.27 5.88 -20.01 -0.12 0.15 16 8 C 0.20 4.85 7.93 137.32 1.09 5.94 16 9 N -0.30 -8.28 12.21 -52.21 -0.64 -8.92 16 10 N -0.06 -1.24 13.47 37.02 0.50 -0.74 16 11 N -0.20 -2.55 7.90 37.02 0.29 -2.26 16 12 H 0.50 1.01 8.96 -347.54 -3.12 -2.10 16 13 N -0.28 -4.79 12.06 -52.16 -0.63 -5.42 16 14 C -0.13 -4.05 8.32 22.59 0.19 -3.86 16 15 C 0.13 4.31 4.67 38.78 0.18 4.49 16 16 N -0.50 -20.43 2.56 -694.61 -1.78 -22.20 16 17 C 0.08 3.02 5.16 86.33 0.45 3.47 16 18 C -0.11 -4.54 6.09 30.65 0.19 -4.35 16 19 C -0.10 -4.95 5.09 30.67 0.16 -4.79 16 20 C 0.06 3.24 2.14 -11.49 -0.02 3.21 16 21 H 0.00 -0.23 8.12 -2.38 -0.02 -0.25 16 22 C -0.54 -31.78 8.49 25.60 0.22 -31.56 16 23 H 0.05 2.90 7.75 -2.91 -0.02 2.88 16 24 C 0.02 0.94 5.28 84.65 0.45 1.39 16 25 N -0.92 -56.35 11.98 21.45 0.26 -56.09 16 26 Si 0.95 45.82 29.54 68.60 2.03 47.85 16 27 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 28 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 29 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 30 C 0.09 4.44 4.33 86.32 0.37 4.81 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.12 0.78 6.28 -2.39 -0.01 0.77 16 34 H 0.19 1.03 6.23 -2.91 -0.02 1.01 16 35 H 0.17 1.70 7.86 -2.91 -0.02 1.68 16 36 H 0.12 4.04 6.92 -2.91 -0.02 4.02 16 37 H 0.03 1.25 7.54 -2.38 -0.02 1.23 16 38 H 0.08 2.67 8.10 -2.39 -0.02 2.65 16 39 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.05 2.61 6.79 -2.38 -0.02 2.59 16 43 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.05 2.22 8.10 -2.38 -0.02 2.20 16 45 H 0.02 1.02 7.32 -2.39 -0.02 1.00 16 Total: -1.00 -82.34 371.04 2.26 -80.09 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -2.07 Total: 4.89 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 4.35 Total: -18.55 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -1.99 Total: -95.63 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.05 Total: -18.64 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -82.34 2.26 -80.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602969340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.802 kcal (2) G-P(sol) polarization free energy of solvation -82.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds