Wall clock time and date at job start Wed Apr 1 2020 00:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47006 * 2 1 4 4 C 1.53004 * 109.46990 * 239.99498 * 2 1 3 5 5 C 1.50703 * 109.46922 * 65.00503 * 4 2 1 6 6 C 1.38313 * 119.87903 * 269.72039 * 5 4 2 7 7 C 1.38025 * 120.11675 * 179.76576 * 6 5 4 8 8 C 1.39300 * 119.88294 * 0.53215 * 7 6 5 9 9 C 1.48456 * 120.11948 * 179.74492 * 8 7 6 10 10 N 1.34046 * 126.67529 * 180.02562 * 9 8 7 11 11 N 1.28982 * 107.26926 * 179.97438 * 10 9 8 12 12 N 1.28731 * 108.94857 * 359.97438 * 11 10 9 13 13 H 0.96997 * 125.34300 * 179.97438 * 12 11 10 14 14 N 1.28879 * 109.31246 * 359.75286 * 12 11 10 15 15 C 1.39297 * 119.76189 * 359.72164 * 8 7 6 16 16 C 1.38028 * 119.88593 * 359.97438 * 15 8 7 17 17 C 1.50702 * 109.46867 * 119.99596 * 2 1 3 18 18 O 1.21294 * 119.99538 * 120.00253 * 17 2 1 19 19 N 1.34774 * 120.00072 * 300.00065 * 17 2 1 20 20 C 1.37095 * 119.99759 * 180.02562 * 19 17 2 21 21 H 1.08002 * 119.99819 * 224.18222 * 20 19 17 22 22 C 1.38951 * 120.00598 * 44.17912 * 20 19 17 23 23 N 1.31414 * 119.99389 * 18.05979 * 22 20 19 24 24 Si 1.86797 * 120.00493 * 198.06118 * 22 20 19 25 25 H 1.48500 * 109.47240 * 270.00106 * 24 22 20 26 26 H 1.48501 * 109.46901 * 29.99841 * 24 22 20 27 27 H 1.48497 * 109.47099 * 149.99553 * 24 22 20 28 28 C 1.46495 * 120.00335 * 0.02562 * 19 17 2 29 29 C 1.52995 * 117.50269 * 189.28368 * 28 19 17 30 30 C 1.52997 * 117.50253 * 120.62049 * 28 19 17 31 31 H 1.08997 * 109.47006 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46747 * 300.00258 * 1 2 3 33 33 H 1.09000 * 109.47236 * 60.00305 * 1 2 3 34 34 H 1.09001 * 109.46409 * 184.99888 * 4 2 1 35 35 H 1.08990 * 109.47182 * 304.99847 * 4 2 1 36 36 H 1.08006 * 119.93840 * 0.02562 * 6 5 4 37 37 H 1.08008 * 120.05934 * 180.25273 * 7 6 5 38 38 H 1.08001 * 120.05889 * 180.02562 * 15 8 7 39 39 H 1.07999 * 119.94375 * 179.97438 * 16 15 8 40 40 H 0.97000 * 119.99483 * 174.90480 * 23 22 20 41 41 H 1.09008 * 115.54881 * 334.95134 * 28 19 17 42 42 H 1.09004 * 117.49570 * 0.02562 * 29 28 19 43 43 H 1.09001 * 117.50151 * 145.01373 * 29 28 19 44 44 H 1.08999 * 117.50065 * 214.98185 * 30 28 19 45 45 H 1.09004 * 117.49511 * 359.97438 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 6 0.4370 -0.2112 -3.1015 7 6 0.0648 0.5019 -4.2231 8 6 0.9097 1.4856 -4.7321 9 6 0.5172 2.2519 -5.9414 10 7 1.2244 3.2206 -6.5400 11 7 0.5367 3.6268 -7.5528 12 7 -0.5605 2.9559 -7.6092 13 1 -1.2534 3.0687 -8.2785 14 7 -0.5917 2.1076 -6.6395 15 6 2.1239 1.7480 -4.1019 16 6 2.4836 1.0333 -2.9772 17 6 2.0323 -0.7103 1.2305 18 8 2.7297 -1.6965 1.1193 19 7 1.7067 -0.2498 2.4546 20 6 2.1641 -0.8958 3.5740 21 1 1.4958 -1.0797 4.4023 22 6 3.4874 -1.3139 3.6430 23 7 4.3818 -0.8009 2.8283 24 14 3.9949 -2.6053 4.8937 25 1 4.3997 -1.9385 6.1573 26 1 2.8511 -3.5146 5.1582 27 1 5.1374 -3.3894 4.3597 28 6 0.8640 0.9410 2.5890 29 6 0.7075 1.5416 3.9874 30 6 -0.4589 0.7889 3.3423 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 3.1263 -0.7995 -1.2055 35 1 1.6055 -1.7199 -1.2950 36 1 -0.2153 -0.9771 -2.7086 37 1 -0.8778 0.2946 -4.7079 38 1 2.7824 2.5098 -4.4922 39 1 3.4250 1.2356 -2.4881 40 1 5.3176 -1.0372 2.9248 41 1 0.8861 1.6303 1.7448 42 1 1.2319 1.0509 4.8074 43 1 0.6263 2.6259 4.0633 44 1 -1.3070 1.3784 2.9941 45 1 -0.7025 -0.1973 3.7376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603573852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:26 Heat of formation + Delta-G solvation = 149.488268 kcal Electronic energy + Delta-G solvation = -28894.203160 eV Core-core repulsion = 24916.065864 eV Total energy + Delta-G solvation = -3978.137296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -44.65498 -39.65335 -38.68002 -36.22785 -35.01815 -34.35348 -33.32240 -32.58828 -31.06884 -31.00591 -30.13660 -26.84989 -25.18525 -24.91618 -24.04672 -22.48434 -22.30517 -21.68380 -21.07835 -20.56347 -19.41403 -18.81979 -17.34760 -16.92330 -16.49233 -16.04461 -15.27112 -15.15142 -14.74369 -14.41151 -14.32873 -13.91776 -13.75772 -13.49582 -13.32541 -13.25918 -12.77270 -12.66348 -12.46335 -12.30120 -11.84655 -11.58579 -11.46591 -11.41339 -11.23819 -11.14854 -10.96108 -10.88750 -10.81290 -10.79482 -10.64695 -10.54496 -10.29260 -10.11912 -9.85212 -9.64791 -8.94525 -8.68039 -8.47738 -7.90434 -6.97104 -6.08861 -3.83618 0.60298 1.01669 1.40970 2.00826 2.24443 3.30081 3.40000 3.42114 3.52167 3.79571 4.01715 4.15520 4.29301 4.77680 4.82573 4.92263 4.96927 5.02851 5.15453 5.24886 5.31971 5.43803 5.48607 5.53982 5.59952 5.61993 5.70604 5.79913 5.87812 5.92465 6.02547 6.10761 6.13305 6.19909 6.24514 6.32329 6.37328 6.39102 6.42237 6.53264 6.65999 6.72021 6.78279 6.88102 6.94707 6.97725 7.64443 7.93231 8.30596 9.10347 9.19669 9.70471 10.33982 11.00369 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020985 B = 0.002364 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.987815 B =11838.991066 C =12440.076673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.098 4.098 3 H 0.079 0.921 4 C -0.064 4.064 5 C -0.040 4.040 6 C -0.120 4.120 7 C -0.078 4.078 8 C -0.040 4.040 9 C 0.230 3.770 10 N -0.271 5.271 11 N -0.053 5.053 12 N -0.231 5.231 13 H 0.474 0.526 14 N -0.299 5.299 15 C -0.072 4.072 16 C -0.120 4.120 17 C 0.490 3.510 18 O -0.533 6.533 19 N -0.427 5.427 20 C -0.348 4.348 21 H 0.075 0.925 22 C 0.074 3.926 23 N -0.834 5.834 24 Si 0.911 3.089 25 H -0.283 1.283 26 H -0.272 1.272 27 H -0.284 1.284 28 C 0.079 3.921 29 C -0.179 4.179 30 C -0.208 4.208 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.263 0.737 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.816 7.268 -16.029 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.120 4.120 3 H 0.097 0.903 4 C -0.102 4.102 5 C -0.041 4.041 6 C -0.138 4.138 7 C -0.098 4.098 8 C -0.044 4.044 9 C -0.050 4.050 10 N -0.144 5.144 11 N -0.048 5.048 12 N -0.077 5.077 13 H 0.328 0.672 14 N -0.151 5.151 15 C -0.092 4.092 16 C -0.138 4.138 17 C 0.277 3.723 18 O -0.411 6.411 19 N -0.147 5.147 20 C -0.475 4.475 21 H 0.093 0.907 22 C -0.137 4.137 23 N -0.467 5.467 24 Si 0.738 3.262 25 H -0.209 1.209 26 H -0.197 1.197 27 H -0.210 1.210 28 C -0.027 4.027 29 C -0.217 4.217 30 C -0.247 4.247 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.073 0.927 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.147 7.142 -16.687 20.795 hybrid contribution -0.241 -0.581 0.485 0.795 sum -10.388 6.560 -16.202 20.334 Atomic orbital electron populations 1.22080 0.94382 1.02256 1.02345 1.21144 0.96504 1.00185 0.94148 0.90323 1.20478 1.02672 0.97813 0.89235 1.20349 0.93377 0.94688 0.95656 1.21050 0.96741 1.00537 0.95494 1.21087 0.98797 0.94136 0.95762 1.17170 0.96875 0.98218 0.92088 1.23804 0.87802 0.95611 0.97738 1.76094 1.23961 1.11514 1.02796 1.78896 0.93855 1.16825 1.15216 1.47716 1.16780 1.21914 1.21249 0.67197 1.74942 1.23682 1.14967 1.01466 1.21131 0.94644 0.98712 0.94705 1.21107 1.00524 0.96092 0.96074 1.19686 0.83497 0.85669 0.83424 1.90522 1.37899 1.27324 1.85352 1.42738 1.45342 1.21629 1.05036 1.18810 0.94058 1.37761 0.96872 0.90701 1.25223 0.95663 0.96700 0.96093 1.69820 1.01342 1.39763 1.35769 0.86232 0.78421 0.81680 0.79842 1.20932 1.19680 1.20988 1.21723 0.94104 0.92025 0.94837 1.23127 1.01891 0.98153 0.98541 1.23319 0.92385 1.01941 1.07067 0.92714 0.90967 0.92729 0.89760 0.90419 0.85159 0.85330 0.84932 0.84937 0.92666 0.87703 0.87535 0.89971 0.89903 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.38 37.16 0.31 -2.02 16 2 C -0.10 -1.77 1.92 -91.77 -0.18 -1.95 16 3 H 0.08 1.40 7.57 -51.93 -0.39 1.00 16 4 C -0.06 -1.06 4.18 -27.88 -0.12 -1.18 16 5 C -0.04 -0.54 4.71 -104.56 -0.49 -1.03 16 6 C -0.12 -1.43 7.96 -39.63 -0.32 -1.75 16 7 C -0.08 -0.87 9.70 -39.26 -0.38 -1.25 16 8 C -0.04 -0.48 5.88 -104.90 -0.62 -1.10 16 9 C 0.23 2.75 7.94 -156.30 -1.24 1.51 16 10 N -0.27 -3.36 12.23 32.15 0.39 -2.97 16 11 N -0.05 -0.54 13.47 60.35 0.81 0.27 16 12 N -0.23 -1.72 7.90 60.35 0.48 -1.24 16 13 H 0.47 1.12 8.96 -340.37 -3.05 -1.93 16 14 N -0.30 -3.03 12.08 32.17 0.39 -2.64 16 15 C -0.07 -0.86 9.70 -39.26 -0.38 -1.25 16 16 C -0.12 -1.54 9.68 -39.63 -0.38 -1.92 16 17 C 0.49 11.87 6.37 -10.99 -0.07 11.80 16 18 O -0.53 -15.12 13.66 5.55 0.08 -15.05 16 19 N -0.43 -10.36 2.85 -107.73 -0.31 -10.66 16 20 C -0.35 -9.34 7.72 -14.93 -0.12 -9.46 16 21 H 0.08 1.96 7.53 -52.49 -0.40 1.56 16 22 C 0.07 2.05 4.39 -17.47 -0.08 1.97 16 23 N -0.83 -24.33 11.72 55.50 0.65 -23.68 16 24 Si 0.91 21.80 29.59 -169.99 -5.03 16.77 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 28 C 0.08 1.54 4.32 -67.94 -0.29 1.25 16 29 C -0.18 -3.21 9.82 -26.70 -0.26 -3.47 16 30 C -0.21 -3.47 9.48 -26.70 -0.25 -3.73 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.10 4.43 -51.93 -0.23 0.87 16 33 H 0.05 0.71 6.28 -51.93 -0.33 0.38 16 34 H 0.08 1.55 7.90 -51.93 -0.41 1.14 16 35 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 36 H 0.13 1.39 8.05 -52.48 -0.42 0.97 16 37 H 0.13 1.25 7.88 -52.48 -0.41 0.84 16 38 H 0.13 1.47 7.89 -52.49 -0.41 1.05 16 39 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.26 7.38 8.32 -40.82 -0.34 7.04 16 41 H 0.11 1.84 6.12 -51.92 -0.32 1.52 16 42 H 0.11 2.13 6.91 -51.93 -0.36 1.77 16 43 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -34.14 373.54 -10.17 -44.32 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -8.40 Total: 2.84 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -4.86 Total: -13.57 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 2.42 Total: -40.93 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.08 Total: -15.05 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.14 -10.17 -44.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603573852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.805 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds