Wall clock time and date at job start Wed Apr 1 2020 00:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47006 * 2 1 4 4 C 1.53004 * 109.46990 * 239.99498 * 2 1 3 5 5 C 1.50703 * 109.46922 * 65.00503 * 4 2 1 6 6 C 1.38313 * 119.87903 * 269.72039 * 5 4 2 7 7 C 1.38025 * 120.11675 * 179.76576 * 6 5 4 8 8 C 1.39300 * 119.88294 * 0.53215 * 7 6 5 9 9 C 1.48456 * 120.11948 * 179.74492 * 8 7 6 10 10 N 1.34046 * 126.67529 * 180.02562 * 9 8 7 11 11 N 1.28982 * 107.26926 * 179.97438 * 10 9 8 12 12 N 1.28731 * 108.94857 * 359.97438 * 11 10 9 13 13 H 0.96997 * 125.34300 * 179.97438 * 12 11 10 14 14 N 1.28879 * 109.31246 * 359.75286 * 12 11 10 15 15 C 1.39297 * 119.76189 * 359.72164 * 8 7 6 16 16 C 1.38028 * 119.88593 * 359.97438 * 15 8 7 17 17 C 1.50702 * 109.46867 * 119.99596 * 2 1 3 18 18 O 1.21294 * 119.99538 * 120.00253 * 17 2 1 19 19 N 1.34774 * 120.00072 * 300.00065 * 17 2 1 20 20 C 1.37095 * 119.99759 * 180.02562 * 19 17 2 21 21 H 1.08002 * 119.99819 * 224.18222 * 20 19 17 22 22 C 1.38951 * 120.00598 * 44.17912 * 20 19 17 23 23 N 1.31414 * 119.99389 * 18.05979 * 22 20 19 24 24 Si 1.86797 * 120.00493 * 198.06118 * 22 20 19 25 25 H 1.48500 * 109.47240 * 270.00106 * 24 22 20 26 26 H 1.48501 * 109.46901 * 29.99841 * 24 22 20 27 27 H 1.48497 * 109.47099 * 149.99553 * 24 22 20 28 28 C 1.46495 * 120.00335 * 0.02562 * 19 17 2 29 29 C 1.52995 * 117.50269 * 189.28368 * 28 19 17 30 30 C 1.52997 * 117.50253 * 120.62049 * 28 19 17 31 31 H 1.08997 * 109.47006 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46747 * 300.00258 * 1 2 3 33 33 H 1.09000 * 109.47236 * 60.00305 * 1 2 3 34 34 H 1.09001 * 109.46409 * 184.99888 * 4 2 1 35 35 H 1.08990 * 109.47182 * 304.99847 * 4 2 1 36 36 H 1.08006 * 119.93840 * 0.02562 * 6 5 4 37 37 H 1.08008 * 120.05934 * 180.25273 * 7 6 5 38 38 H 1.08001 * 120.05889 * 180.02562 * 15 8 7 39 39 H 1.07999 * 119.94375 * 179.97438 * 16 15 8 40 40 H 0.97000 * 119.99483 * 174.90480 * 23 22 20 41 41 H 1.09008 * 115.54881 * 334.95134 * 28 19 17 42 42 H 1.09004 * 117.49570 * 0.02562 * 29 28 19 43 43 H 1.09001 * 117.50151 * 145.01373 * 29 28 19 44 44 H 1.08999 * 117.50065 * 214.98185 * 30 28 19 45 45 H 1.09004 * 117.49511 * 359.97438 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 6 0.4370 -0.2112 -3.1015 7 6 0.0648 0.5019 -4.2231 8 6 0.9097 1.4856 -4.7321 9 6 0.5172 2.2519 -5.9414 10 7 1.2244 3.2206 -6.5400 11 7 0.5367 3.6268 -7.5528 12 7 -0.5605 2.9559 -7.6092 13 1 -1.2534 3.0687 -8.2785 14 7 -0.5917 2.1076 -6.6395 15 6 2.1239 1.7480 -4.1019 16 6 2.4836 1.0333 -2.9772 17 6 2.0323 -0.7103 1.2305 18 8 2.7297 -1.6965 1.1193 19 7 1.7067 -0.2498 2.4546 20 6 2.1641 -0.8958 3.5740 21 1 1.4958 -1.0797 4.4023 22 6 3.4874 -1.3139 3.6430 23 7 4.3818 -0.8009 2.8283 24 14 3.9949 -2.6053 4.8937 25 1 4.3997 -1.9385 6.1573 26 1 2.8511 -3.5146 5.1582 27 1 5.1374 -3.3894 4.3597 28 6 0.8640 0.9410 2.5890 29 6 0.7075 1.5416 3.9874 30 6 -0.4589 0.7889 3.3423 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 3.1263 -0.7995 -1.2055 35 1 1.6055 -1.7199 -1.2950 36 1 -0.2153 -0.9771 -2.7086 37 1 -0.8778 0.2946 -4.7079 38 1 2.7824 2.5098 -4.4922 39 1 3.4250 1.2356 -2.4881 40 1 5.3176 -1.0372 2.9248 41 1 0.8861 1.6303 1.7448 42 1 1.2319 1.0509 4.8074 43 1 0.6263 2.6259 4.0633 44 1 -1.3070 1.3784 2.9941 45 1 -0.7025 -0.1973 3.7376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603573852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:25 Heat of formation + Delta-G solvation = 128.477946 kcal Electronic energy + Delta-G solvation = -28895.114236 eV Core-core repulsion = 24916.065864 eV Total energy + Delta-G solvation = -3979.048372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.43834 -40.94225 -40.10188 -37.82168 -36.25566 -35.26565 -34.68824 -34.12702 -32.76637 -31.94353 -31.39879 -28.03049 -27.03665 -25.76095 -25.14739 -23.74084 -23.31942 -23.06780 -22.47649 -21.85963 -20.49898 -20.16326 -18.31191 -18.11894 -17.83646 -17.66619 -16.76170 -16.37384 -16.10479 -16.02040 -15.58217 -15.33987 -15.00825 -14.73491 -14.48504 -14.32311 -14.20477 -13.99772 -13.79751 -13.34959 -13.19140 -13.05617 -12.78445 -12.67349 -12.63348 -12.41556 -12.34937 -12.25874 -12.19216 -12.15233 -11.98646 -11.90615 -11.71083 -11.66931 -11.37195 -11.13740 -10.66083 -9.90206 -9.78672 -9.42851 -8.88271 -8.16355 -5.93385 -0.27267 0.19631 0.48188 1.33051 1.36481 1.43708 1.45012 1.50584 2.29660 2.47441 2.69384 2.82774 3.13781 3.18922 3.19310 3.42505 3.82052 3.94804 4.08936 4.12377 4.17257 4.19609 4.26623 4.31410 4.34664 4.44538 4.49426 4.53564 4.61598 4.67623 4.88460 4.93217 4.93660 5.05581 5.07525 5.14366 5.17970 5.33461 5.35768 5.44234 5.46718 5.48297 5.52864 5.53058 5.64166 5.76298 5.96747 6.25283 7.09668 7.13615 7.27333 7.78185 8.44756 8.92352 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020985 B = 0.002364 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.987815 B =11838.991066 C =12440.076673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.082 0.918 4 C -0.053 4.053 5 C -0.050 4.050 6 C -0.114 4.114 7 C -0.070 4.070 8 C -0.040 4.040 9 C 0.215 3.785 10 N -0.297 5.297 11 N -0.058 5.058 12 N -0.200 5.200 13 H 0.494 0.506 14 N -0.295 5.295 15 C -0.073 4.073 16 C -0.125 4.125 17 C 0.474 3.526 18 O -0.588 6.588 19 N -0.444 5.444 20 C -0.354 4.354 21 H 0.074 0.926 22 C 0.021 3.979 23 N -0.872 5.872 24 Si 0.967 3.033 25 H -0.265 1.265 26 H -0.269 1.269 27 H -0.294 1.294 28 C 0.052 3.948 29 C -0.180 4.180 30 C -0.178 4.178 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.129 0.871 40 H 0.258 0.742 41 H 0.127 0.873 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.125 0.875 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.851 8.649 -17.276 23.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.101 0.899 4 C -0.091 4.091 5 C -0.051 4.051 6 C -0.132 4.132 7 C -0.090 4.090 8 C -0.043 4.043 9 C -0.065 4.065 10 N -0.169 5.169 11 N -0.053 5.053 12 N -0.051 5.051 13 H 0.353 0.647 14 N -0.147 5.147 15 C -0.093 4.093 16 C -0.143 4.143 17 C 0.263 3.737 18 O -0.470 6.470 19 N -0.164 5.164 20 C -0.481 4.481 21 H 0.092 0.908 22 C -0.185 4.185 23 N -0.507 5.507 24 Si 0.792 3.208 25 H -0.191 1.191 26 H -0.194 1.194 27 H -0.220 1.220 28 C -0.053 4.053 29 C -0.218 4.218 30 C -0.217 4.217 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.147 0.853 40 H 0.067 0.933 41 H 0.145 0.855 42 H 0.096 0.904 43 H 0.133 0.867 44 H 0.143 0.857 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.231 8.567 -17.923 23.868 hybrid contribution 0.576 -0.954 0.774 1.357 sum -12.654 7.613 -17.149 22.631 Atomic orbital electron populations 1.22011 0.91530 1.02509 1.03913 1.21049 0.98673 0.99369 0.91698 0.89948 1.20250 1.00571 0.97927 0.90319 1.20050 0.94687 0.95262 0.95110 1.21157 0.96031 1.00627 0.95408 1.21249 0.99292 0.93296 0.95197 1.17322 0.96766 0.98177 0.92083 1.23790 0.88432 0.96058 0.98173 1.76081 1.24973 1.12254 1.03632 1.78847 0.94473 1.17109 1.14861 1.47787 1.16469 1.20224 1.20650 0.64653 1.74897 1.22975 1.15175 1.01656 1.21163 0.95048 0.98747 0.94354 1.21103 1.00454 0.96258 0.96508 1.20754 0.82478 0.85366 0.85059 1.90475 1.40222 1.29844 1.86450 1.42980 1.45730 1.23126 1.04526 1.19034 0.93903 1.37712 0.97490 0.90794 1.26014 0.96042 0.98387 0.98028 1.69934 1.01214 1.41591 1.37953 0.85363 0.77580 0.79410 0.78443 1.19053 1.19380 1.22033 1.22001 0.95398 0.91226 0.96635 1.23175 1.02228 0.99953 0.96438 1.23324 0.92356 1.01476 1.04498 0.93122 0.90611 0.89795 0.92904 0.91183 0.83648 0.83286 0.84342 0.85334 0.93304 0.85535 0.90377 0.86744 0.85700 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 8.38 71.98 0.60 -3.42 16 2 C -0.09 -3.13 1.92 -11.54 -0.02 -3.15 16 3 H 0.08 2.91 7.57 -2.39 -0.02 2.89 16 4 C -0.05 -1.79 4.18 29.85 0.12 -1.66 16 5 C -0.05 -1.32 4.71 -19.83 -0.09 -1.41 16 6 C -0.11 -2.46 7.96 22.24 0.18 -2.28 16 7 C -0.07 -1.38 9.70 22.47 0.22 -1.17 16 8 C -0.04 -0.89 5.88 -20.04 -0.12 -1.01 16 9 C 0.22 4.68 7.94 137.38 1.09 5.77 16 10 N -0.30 -6.91 12.23 -52.18 -0.64 -7.55 16 11 N -0.06 -1.07 13.47 37.02 0.50 -0.57 16 12 N -0.20 -2.42 7.90 37.02 0.29 -2.13 16 13 H 0.49 0.78 8.96 -347.54 -3.12 -2.34 16 14 N -0.29 -5.12 12.08 -52.13 -0.63 -5.75 16 15 C -0.07 -1.69 9.70 22.47 0.22 -1.47 16 16 C -0.13 -3.17 9.68 22.24 0.22 -2.96 16 17 C 0.47 23.63 6.37 87.66 0.56 24.19 16 18 O -0.59 -35.06 13.66 -3.07 -0.04 -35.10 16 19 N -0.44 -21.83 2.85 -613.14 -1.75 -23.58 16 20 C -0.35 -19.45 7.72 84.04 0.65 -18.80 16 21 H 0.07 3.96 7.53 -2.91 -0.02 3.93 16 22 C 0.02 1.22 4.39 84.93 0.37 1.59 16 23 N -0.87 -53.16 11.72 21.66 0.25 -52.90 16 24 Si 0.97 46.11 29.59 68.60 2.03 48.14 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 26 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 28 C 0.05 1.96 4.32 44.99 0.19 2.16 16 29 C -0.18 -6.13 9.82 30.62 0.30 -5.83 16 30 C -0.18 -5.45 9.48 30.62 0.29 -5.15 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 2.09 4.43 -2.39 -0.01 2.08 16 33 H 0.08 1.89 6.28 -2.39 -0.01 1.87 16 34 H 0.05 2.09 7.90 -2.39 -0.02 2.07 16 35 H 0.07 2.42 8.08 -2.39 -0.02 2.41 16 36 H 0.15 2.68 8.05 -2.91 -0.02 2.66 16 37 H 0.15 2.33 7.88 -2.91 -0.02 2.31 16 38 H 0.14 2.98 7.89 -2.91 -0.02 2.96 16 39 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 40 H 0.26 15.21 8.32 -92.71 -0.77 14.44 16 41 H 0.13 4.14 6.12 -2.38 -0.01 4.13 16 42 H 0.08 3.12 6.91 -2.38 -0.02 3.10 16 43 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 45 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -77.63 373.54 2.73 -74.90 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -2.07 Total: 19.12 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 4.78 Total: -14.60 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -1.97 Total: -92.47 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -0.04 Total: -35.10 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -77.63 2.73 -74.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603573852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.382 kcal (2) G-P(sol) polarization free energy of solvation -77.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds