Wall clock time and date at job start Wed Apr 1 2020 00:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47066 * 2 1 4 4 C 1.53002 * 109.46950 * 120.00182 * 2 1 3 5 5 C 1.50702 * 109.46901 * 294.99923 * 4 2 1 6 6 C 1.38311 * 119.88406 * 269.72419 * 5 4 2 7 7 C 1.38024 * 120.11889 * 179.76529 * 6 5 4 8 8 C 1.39302 * 119.88245 * 0.53537 * 7 6 5 9 9 C 1.48460 * 120.11781 * 179.74296 * 8 7 6 10 10 N 1.34052 * 126.67205 * 179.97438 * 9 8 7 11 11 N 1.28985 * 107.26574 * 179.97438 * 10 9 8 12 12 N 1.28733 * 108.94640 * 359.97438 * 11 10 9 13 13 H 0.96996 * 125.33713 * 179.97438 * 12 11 10 14 14 N 1.28867 * 109.31545 * 359.75091 * 12 11 10 15 15 C 1.39302 * 119.76180 * 359.71780 * 8 7 6 16 16 C 1.38025 * 119.88147 * 0.02562 * 15 8 7 17 17 C 1.50698 * 109.47333 * 239.99862 * 2 1 3 18 18 O 1.21291 * 120.00356 * 260.19191 * 17 2 1 19 19 N 1.34776 * 120.00183 * 80.18773 * 17 2 1 20 20 C 1.37093 * 120.00586 * 185.04839 * 19 17 2 21 21 H 1.08004 * 119.99454 * 330.91551 * 20 19 17 22 22 C 1.38944 * 120.00348 * 150.91699 * 20 19 17 23 23 N 1.31409 * 120.00232 * 348.57984 * 22 20 19 24 24 Si 1.86802 * 120.00079 * 168.58743 * 22 20 19 25 25 H 1.48501 * 109.47204 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47291 * 119.99629 * 24 22 20 27 27 H 1.48497 * 109.47101 * 239.99847 * 24 22 20 28 28 C 1.46504 * 119.99478 * 5.32305 * 19 17 2 29 29 C 1.52998 * 117.49776 * 136.03700 * 28 19 17 30 30 C 1.52998 * 117.50214 * 67.37562 * 28 19 17 31 31 H 1.09002 * 109.47442 * 185.79928 * 1 2 3 32 32 H 1.08995 * 109.47479 * 305.80552 * 1 2 3 33 33 H 1.09007 * 109.46871 * 65.80512 * 1 2 3 34 34 H 1.09007 * 109.47041 * 54.99815 * 4 2 1 35 35 H 1.08999 * 109.47459 * 175.00178 * 4 2 1 36 36 H 1.07999 * 119.93913 * 0.02562 * 6 5 4 37 37 H 1.08006 * 120.05926 * 180.24911 * 7 6 5 38 38 H 1.08005 * 120.05639 * 180.02562 * 15 8 7 39 39 H 1.08002 * 119.93749 * 179.97438 * 16 15 8 40 40 H 0.96996 * 120.00527 * 185.03261 * 23 22 20 41 41 H 1.09000 * 115.55156 * 281.70144 * 28 19 17 42 42 H 1.09005 * 117.49753 * 0.02562 * 29 28 19 43 43 H 1.08999 * 117.49881 * 145.01444 * 29 28 19 44 44 H 1.08995 * 117.50141 * 214.97886 * 30 28 19 45 45 H 1.09005 * 117.49190 * 359.97438 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6412 0.0570 2.4766 6 6 2.4862 1.0290 2.9809 7 6 2.1237 1.7481 4.1018 8 6 0.9094 1.4857 4.7320 9 6 0.5169 2.2521 5.9414 10 7 -0.6136 2.1097 6.6475 11 7 -0.5688 2.9589 7.6174 12 7 0.5344 3.6183 7.5449 13 1 0.8114 4.3175 8.1574 14 7 1.2152 3.2004 6.5336 15 6 0.0645 0.5021 4.2230 16 6 0.4343 -0.2075 3.0984 17 6 2.0323 -0.7104 -1.2304 18 8 2.4032 -1.8629 -1.1564 19 7 2.0695 -0.0653 -2.4131 20 6 2.4277 -0.7403 -3.5513 21 1 3.1017 -1.5820 -3.4903 22 6 1.9238 -0.3416 -4.7833 23 7 0.9397 0.5274 -4.8406 24 14 2.6451 -1.0409 -6.3581 25 1 3.7351 -1.9924 -6.0235 26 1 1.5836 -1.7504 -7.1164 27 1 3.1905 0.0644 -7.1863 28 6 1.7328 1.3589 -2.4815 29 6 2.6348 2.2582 -3.3291 30 6 2.6861 2.3437 -1.8016 31 1 -0.3634 -1.0224 0.1038 32 1 -0.3634 0.6012 0.8334 33 1 -0.3633 0.4212 -0.9375 34 1 1.6052 -1.7199 1.2951 35 1 3.1262 -0.7995 1.2057 36 1 3.4294 1.2285 2.4941 37 1 2.7824 2.5097 4.4924 38 1 -0.8783 0.2950 4.7076 39 1 -0.2198 -0.9706 2.7032 40 1 0.5391 0.7508 -5.6952 41 1 0.6682 1.5920 -2.4588 42 1 3.4785 1.7901 -3.8363 43 1 2.1637 3.0830 -3.8637 44 1 2.2489 3.2247 -1.3320 45 1 3.5637 1.9318 -1.3032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603573857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:29 Heat of formation + Delta-G solvation = 120.863879 kcal Electronic energy + Delta-G solvation = -28877.361949 eV Core-core repulsion = 24897.983407 eV Total energy + Delta-G solvation = -3979.378542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -45.42559 -41.01509 -40.13192 -37.95872 -36.21327 -35.24578 -34.79280 -34.13182 -32.98504 -31.95137 -31.39834 -27.98590 -27.26560 -25.69774 -25.18833 -23.89303 -23.30225 -22.96214 -22.76477 -21.74676 -20.15548 -20.00874 -18.72011 -18.10781 -17.90374 -17.57459 -16.91776 -16.36619 -16.25874 -16.02756 -15.79349 -15.31148 -15.05636 -14.85424 -14.66290 -14.28701 -14.21879 -13.88454 -13.73346 -13.42472 -13.29481 -13.22211 -12.89667 -12.78554 -12.47301 -12.42461 -12.31622 -12.24800 -12.20717 -12.15918 -11.99300 -11.96025 -11.74445 -11.65323 -11.41959 -11.01671 -10.62641 -10.10465 -9.83157 -9.51934 -9.41042 -8.25131 -5.91831 -0.25175 0.21012 0.51481 1.34750 1.36120 1.41351 1.46091 1.52865 2.10461 2.30378 2.71424 2.84470 3.01404 3.11239 3.20810 3.27136 3.77213 3.95114 4.09839 4.11991 4.20390 4.25271 4.28105 4.31098 4.41528 4.46180 4.51376 4.56221 4.62414 4.75778 4.86585 4.88992 4.94455 4.96482 5.05685 5.16177 5.19573 5.32834 5.37857 5.43253 5.46007 5.48975 5.50407 5.55948 5.64883 5.77279 5.99645 6.20903 6.60855 7.14863 7.26193 7.57367 8.14642 8.79099 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025697 B = 0.002259 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.358071 B =12393.193646 C =12768.692551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 H 0.102 0.898 4 C -0.057 4.057 5 C -0.051 4.051 6 C -0.120 4.120 7 C -0.072 4.072 8 C -0.041 4.041 9 C 0.214 3.786 10 N -0.295 5.295 11 N -0.058 5.058 12 N -0.201 5.201 13 H 0.494 0.506 14 N -0.297 5.297 15 C -0.074 4.074 16 C -0.118 4.118 17 C 0.453 3.547 18 O -0.633 6.633 19 N -0.434 5.434 20 C -0.345 4.345 21 H 0.062 0.938 22 C 0.015 3.985 23 N -0.879 5.879 24 Si 0.971 3.029 25 H -0.278 1.278 26 H -0.277 1.277 27 H -0.268 1.268 28 C 0.109 3.891 29 C -0.147 4.147 30 C -0.183 4.183 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.270 0.730 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.125 0.875 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 11.049 20.673 23.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.106 4.106 3 H 0.120 0.880 4 C -0.094 4.094 5 C -0.052 4.052 6 C -0.138 4.138 7 C -0.092 4.092 8 C -0.044 4.044 9 C -0.065 4.065 10 N -0.168 5.168 11 N -0.053 5.053 12 N -0.052 5.052 13 H 0.353 0.647 14 N -0.149 5.149 15 C -0.094 4.094 16 C -0.136 4.136 17 C 0.244 3.756 18 O -0.520 6.520 19 N -0.152 5.152 20 C -0.473 4.473 21 H 0.080 0.920 22 C -0.189 4.189 23 N -0.516 5.516 24 Si 0.796 3.204 25 H -0.203 1.203 26 H -0.203 1.203 27 H -0.193 1.193 28 C 0.005 3.995 29 C -0.184 4.184 30 C -0.221 4.221 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.160 0.840 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.085 0.915 43 H 0.113 0.887 44 H 0.144 0.856 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.907 10.833 21.053 23.693 hybrid contribution 0.677 -0.363 -1.288 1.499 sum -0.230 10.469 19.765 22.368 Atomic orbital electron populations 1.21684 0.92588 1.02080 1.02382 1.21097 0.97916 1.00533 0.91018 0.87952 1.20343 1.01093 0.98032 0.89978 1.20028 0.94521 0.95594 0.95056 1.21154 1.00568 0.95696 0.96337 1.21215 0.94645 0.98853 0.94515 1.17346 0.96988 0.98020 0.92061 1.23837 0.88954 0.95361 0.98360 1.76075 1.20657 1.17241 1.02797 1.78847 1.06390 1.03067 1.17024 1.47783 1.10141 1.27718 1.19563 0.64701 1.74899 1.23294 1.14928 1.01785 1.21208 0.99303 0.93636 0.95265 1.21147 0.96411 1.00619 0.95396 1.21060 0.82002 0.86573 0.86004 1.90467 1.54401 1.20523 1.86620 1.43240 1.58736 1.07209 1.05966 1.19379 1.28047 1.14656 0.85231 0.92044 1.25827 0.95434 0.96566 1.01060 1.69928 1.22106 1.32730 1.26866 0.85204 0.78304 0.78316 0.78540 1.20271 1.20311 1.19256 1.21038 0.94800 0.78829 1.04865 1.22643 1.01550 1.01257 0.92992 1.23592 1.01671 1.01593 0.95236 0.93183 0.89299 0.93658 0.91287 0.91453 0.84039 0.83709 0.84145 0.84342 0.91997 0.88757 0.91548 0.88699 0.85648 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 8.51 71.98 0.61 -3.49 16 2 C -0.08 -2.92 2.02 -11.54 -0.02 -2.94 16 3 H 0.10 3.21 5.78 -2.39 -0.01 3.19 16 4 C -0.06 -1.72 4.22 29.85 0.13 -1.59 16 5 C -0.05 -1.21 4.72 -19.83 -0.09 -1.31 16 6 C -0.12 -2.48 9.68 22.24 0.22 -2.27 16 7 C -0.07 -1.39 9.70 22.47 0.22 -1.17 16 8 C -0.04 -0.86 5.88 -20.04 -0.12 -0.98 16 9 C 0.21 4.52 7.94 137.38 1.09 5.61 16 10 N -0.30 -6.61 12.23 -52.18 -0.64 -7.25 16 11 N -0.06 -1.04 13.47 37.02 0.50 -0.54 16 12 N -0.20 -2.39 7.90 37.02 0.29 -2.09 16 13 H 0.49 0.75 8.96 -347.54 -3.12 -2.37 16 14 N -0.30 -5.09 12.08 -52.13 -0.63 -5.72 16 15 C -0.07 -1.53 9.70 22.48 0.22 -1.31 16 16 C -0.12 -2.56 8.09 22.24 0.18 -2.38 16 17 C 0.45 21.79 6.71 87.66 0.59 22.38 16 18 O -0.63 -35.56 15.88 -3.06 -0.05 -35.61 16 19 N -0.43 -21.86 2.91 -613.14 -1.78 -23.64 16 20 C -0.35 -19.46 8.69 84.04 0.73 -18.73 16 21 H 0.06 3.78 7.49 -2.91 -0.02 3.76 16 22 C 0.01 0.78 4.58 84.93 0.39 1.17 16 23 N -0.88 -45.50 10.94 21.66 0.24 -45.26 16 24 Si 0.97 42.60 29.57 68.60 2.03 44.63 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 28 C 0.11 4.62 3.05 44.99 0.14 4.76 16 29 C -0.15 -5.78 8.53 30.62 0.26 -5.52 16 30 C -0.18 -5.97 8.58 30.62 0.26 -5.71 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 2.24 6.66 -2.39 -0.02 2.22 16 33 H 0.04 1.58 7.07 -2.38 -0.02 1.57 16 34 H 0.07 2.26 8.00 -2.38 -0.02 2.24 16 35 H 0.07 2.13 8.08 -2.39 -0.02 2.11 16 36 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.15 2.30 7.88 -2.91 -0.02 2.28 16 38 H 0.14 2.66 7.89 -2.91 -0.02 2.63 16 39 H 0.14 2.77 8.03 -2.91 -0.02 2.75 16 40 H 0.27 13.22 8.32 -92.71 -0.77 12.45 16 41 H 0.09 4.12 7.41 -2.39 -0.02 4.10 16 42 H 0.07 2.93 7.73 -2.38 -0.02 2.91 16 43 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 44 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 45 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 Total: -1.00 -71.62 376.84 2.67 -68.95 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -2.08 Total: 20.02 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 4.79 Total: -13.48 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -2.02 Total: -84.51 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.05 Total: -35.61 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -71.62 2.67 -68.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603573857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.814 kcal (2) G-P(sol) polarization free energy of solvation -71.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds