Wall clock time and date at job start Wed Apr 1 2020 01:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46914 * 2 1 4 4 C 1.46502 * 119.99833 * 275.34799 * 3 2 1 5 5 C 1.50700 * 109.47438 * 270.00596 * 4 3 2 6 6 H 1.07998 * 119.99882 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99922 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00411 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99729 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47358 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46947 * 119.99913 * 9 7 5 12 12 H 1.48500 * 109.47194 * 239.99961 * 9 7 5 13 13 C 1.34778 * 120.00363 * 95.35332 * 3 2 1 14 14 O 1.21282 * 120.00043 * 184.83073 * 13 3 2 15 15 C 1.50694 * 119.99987 * 4.83260 * 13 3 2 16 16 C 1.50705 * 115.56290 * 280.38926 * 15 13 3 17 17 C 1.38310 * 119.88700 * 138.91144 * 16 15 13 18 18 C 1.38029 * 120.11812 * 179.72549 * 17 16 15 19 19 C 1.39300 * 119.87711 * 0.56081 * 18 17 16 20 20 C 1.48470 * 120.11337 * 179.68271 * 19 18 17 21 21 N 1.34048 * 126.67427 * 180.02562 * 20 19 18 22 22 N 1.28986 * 107.26847 * 179.97438 * 21 20 19 23 23 N 1.28729 * 108.94073 * 0.02562 * 22 21 20 24 24 H 0.97007 * 125.33671 * 180.02562 * 23 22 21 25 25 N 1.28868 * 109.32204 * 359.74773 * 23 22 21 26 26 C 1.39292 * 119.77039 * 359.71088 * 19 18 17 27 27 C 1.38030 * 119.88210 * 359.97438 * 26 19 18 28 28 C 1.52993 * 117.50205 * 134.69422 * 15 13 3 29 29 C 1.53001 * 117.50028 * 66.06805 * 15 13 3 30 30 H 1.09005 * 109.47047 * 300.00220 * 1 2 3 31 31 H 1.08995 * 109.47050 * 60.00159 * 1 2 3 32 32 H 1.08999 * 109.47298 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47313 * 240.00134 * 2 1 3 34 34 H 1.09001 * 109.47259 * 119.99482 * 2 1 3 35 35 H 1.09003 * 109.46922 * 30.00463 * 4 3 2 36 36 H 1.09000 * 109.47415 * 149.99986 * 4 3 2 37 37 H 0.96993 * 120.00348 * 180.02562 * 8 7 5 38 38 H 1.08003 * 119.93703 * 359.97100 * 17 16 15 39 39 H 1.08002 * 120.05825 * 180.27747 * 18 17 16 40 40 H 1.08004 * 120.06265 * 179.97438 * 26 19 18 41 41 H 1.08003 * 119.94487 * 179.97438 * 27 26 19 42 42 H 1.09001 * 117.50150 * 359.97438 * 28 15 13 43 43 H 1.09002 * 117.50524 * 145.02092 * 28 15 13 44 44 H 1.09002 * 117.50428 * 214.97802 * 29 15 13 45 45 H 1.09002 * 117.49609 * 0.02562 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1510 2.1112 -1.2632 5 6 3.5301 1.8900 -1.8289 6 1 4.2373 1.2682 -1.3002 7 6 3.8894 2.4823 -3.0211 8 7 3.0285 3.2399 -3.6647 9 14 5.5992 2.2086 -3.7219 10 1 6.3706 1.3227 -2.8135 11 1 5.4900 1.5714 -5.0588 12 1 6.2961 3.5136 -3.8509 13 6 2.3456 1.9804 1.1621 14 8 2.6659 3.1501 1.1721 15 6 2.3137 1.1969 2.4489 16 6 0.9497 1.0077 3.0614 17 6 0.6050 -0.2131 3.6126 18 6 -0.6408 -0.3898 4.1799 19 6 -1.5558 0.6605 4.1862 20 6 -2.8999 0.4740 4.7887 21 7 -3.8767 1.3888 4.8657 22 7 -4.8778 0.8310 5.4577 23 7 -4.5665 -0.3833 5.7504 24 1 -5.1459 -1.0182 6.2000 25 7 -3.3665 -0.6248 5.3474 26 6 -1.2056 1.8862 3.6247 27 6 0.0453 2.0543 3.0658 28 6 3.5002 1.3546 3.4018 29 6 3.3234 0.0584 2.6082 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.4054 1.7500 -1.9716 36 1 1.9975 3.1757 -1.0857 37 1 3.2812 3.6563 -4.5035 38 1 1.3134 -1.0283 3.6026 39 1 -0.9074 -1.3422 4.6140 40 1 -1.9114 2.7037 3.6266 41 1 0.3178 3.0041 2.6298 42 1 4.3043 2.0248 3.0977 43 1 3.2945 1.3217 4.4717 44 1 3.0013 -0.8271 3.1560 45 1 4.0111 -0.1235 1.7823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604290642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:35 Heat of formation + Delta-G solvation = 143.772711 kcal Electronic energy + Delta-G solvation = -29423.118747 eV Core-core repulsion = 25444.733607 eV Total energy + Delta-G solvation = -3978.385141 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.69234 -40.44899 -38.66020 -36.37526 -35.24997 -34.57143 -33.65401 -32.72243 -31.12182 -30.48820 -29.98375 -27.42999 -25.37579 -24.99317 -23.84891 -23.27109 -22.62240 -22.10811 -21.87462 -20.78949 -19.43762 -18.27832 -17.38149 -17.18827 -16.49501 -16.36876 -15.56810 -15.39030 -15.03411 -14.69274 -14.43959 -14.18640 -13.89963 -13.62950 -13.38387 -13.29444 -13.04141 -12.85720 -12.50819 -12.23491 -12.00565 -11.90768 -11.67742 -11.56595 -11.51019 -11.35206 -11.33273 -11.15283 -11.05533 -10.88046 -10.71767 -10.61963 -10.42915 -10.20498 -10.11586 -9.60598 -9.06004 -8.93182 -8.49279 -8.43626 -7.63705 -6.04288 -4.09222 0.50765 0.95831 1.30061 1.97445 2.14821 3.29206 3.29680 3.37210 3.40508 3.45920 3.54008 3.74536 3.96949 4.09187 4.43729 4.52121 4.77913 4.85622 4.90428 5.00179 5.04191 5.18521 5.21775 5.29620 5.30388 5.48873 5.50048 5.60682 5.67470 5.75674 5.82064 5.91216 5.95237 5.97922 6.07796 6.16499 6.19713 6.28170 6.32842 6.34716 6.51974 6.60710 6.77088 7.10057 7.46518 7.56418 7.89873 7.92435 8.23453 8.44276 8.89491 9.08977 9.55988 11.03765 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019995 B = 0.002661 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.980135 B =10521.622470 C =11030.260602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.586 5.586 4 C 0.245 3.755 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.546 3.454 14 O -0.537 6.537 15 C -0.124 4.124 16 C -0.003 4.003 17 C -0.121 4.121 18 C -0.075 4.075 19 C -0.031 4.031 20 C 0.228 3.772 21 N -0.268 5.268 22 N -0.051 5.051 23 N -0.230 5.230 24 H 0.474 0.526 25 N -0.298 5.298 26 C -0.068 4.068 27 C -0.107 4.107 28 C -0.134 4.134 29 C -0.163 4.163 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.033 0.967 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.081 -12.286 19.289 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.317 5.317 4 C 0.126 3.874 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.332 3.668 14 O -0.414 6.414 15 C -0.127 4.127 16 C -0.005 4.005 17 C -0.139 4.139 18 C -0.095 4.095 19 C -0.035 4.035 20 C -0.052 4.052 21 N -0.141 5.141 22 N -0.046 5.046 23 N -0.076 5.076 24 H 0.328 0.672 25 N -0.149 5.149 26 C -0.088 4.088 27 C -0.125 4.125 28 C -0.171 4.171 29 C -0.200 4.200 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.125 0.875 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.569 -11.353 19.258 25.172 hybrid contribution 0.820 -0.745 -0.419 1.185 sum -10.749 -12.098 18.839 24.836 Atomic orbital electron populations 1.22212 0.96757 1.01258 1.02472 1.21458 0.93674 0.84125 1.02598 1.48155 1.62260 1.13493 1.07762 1.19297 0.96831 0.93071 0.78205 1.21454 0.98648 1.30387 1.05953 0.92460 1.24935 0.97439 0.94939 0.96790 1.69939 1.34826 1.31970 1.16507 0.86461 0.84285 0.78038 0.78739 1.19816 1.20978 1.20885 1.19007 0.77959 0.86621 0.83262 1.90674 1.48376 1.16146 1.86227 1.20269 0.89970 1.04673 0.97784 1.18978 0.92761 0.93449 0.95264 1.20945 0.96508 0.97066 0.99390 1.21033 0.92598 0.97959 0.97925 1.17200 0.87517 0.95884 1.02880 1.23755 0.96855 0.85530 0.99055 1.76116 0.97257 1.25542 1.15206 1.78919 1.20937 0.93205 1.11564 1.47721 1.10016 1.11034 1.38817 0.67153 1.74920 0.96668 1.25807 1.17522 1.21138 0.96404 0.96020 0.95273 1.21068 0.92664 0.99653 0.99140 1.23044 0.97610 0.99545 0.96950 1.23213 1.00855 0.92437 1.03473 0.92707 0.92273 0.92472 0.90512 0.91020 0.94933 0.93790 0.92761 0.84901 0.85004 0.84579 0.84675 0.87539 0.88054 0.87749 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 10.22 37.16 0.38 -2.10 16 2 C 0.11 1.73 5.87 -4.04 -0.02 1.71 16 3 N -0.59 -12.25 2.46 -175.06 -0.43 -12.68 16 4 C 0.24 6.36 5.22 -5.19 -0.03 6.34 16 5 C -0.53 -14.71 9.39 -34.44 -0.32 -15.03 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 9 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.55 11.17 6.03 -10.99 -0.07 11.10 16 14 O -0.54 -13.35 16.55 5.56 0.09 -13.26 16 15 C -0.12 -1.84 1.17 -156.82 -0.18 -2.02 16 16 C 0.00 -0.04 3.92 -104.56 -0.41 -0.45 16 17 C -0.12 -1.26 9.37 -39.63 -0.37 -1.63 16 18 C -0.07 -0.76 9.70 -39.26 -0.38 -1.14 16 19 C -0.03 -0.36 5.88 -104.89 -0.62 -0.98 16 20 C 0.23 2.62 7.94 -156.30 -1.24 1.38 16 21 N -0.27 -3.30 12.23 32.16 0.39 -2.90 16 22 N -0.05 -0.51 13.47 60.35 0.81 0.30 16 23 N -0.23 -1.63 7.90 60.35 0.48 -1.16 16 24 H 0.47 0.96 8.96 -340.37 -3.05 -2.09 16 25 N -0.30 -2.85 12.08 32.17 0.39 -2.46 16 26 C -0.07 -0.84 9.70 -39.27 -0.38 -1.22 16 27 C -0.11 -1.47 8.73 -39.63 -0.35 -1.82 16 28 C -0.13 -1.75 9.85 -26.73 -0.26 -2.01 16 29 C -0.16 -1.95 7.78 -26.73 -0.21 -2.16 16 30 H 0.05 0.81 6.25 -51.93 -0.32 0.48 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 34 H 0.07 0.99 5.14 -51.93 -0.27 0.72 16 35 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 36 H 0.04 1.30 7.36 -51.93 -0.38 0.91 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.13 1.09 5.97 -52.48 -0.31 0.78 16 39 H 0.13 1.10 7.88 -52.49 -0.41 0.69 16 40 H 0.14 1.58 7.89 -52.48 -0.41 1.17 16 41 H 0.14 2.09 7.67 -52.48 -0.40 1.68 16 42 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.10 0.92 6.13 -51.93 -0.32 0.60 16 45 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 381.32 15.07 5.75 5.75 Total: -1.00 -34.95 381.32 -9.75 -44.70 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.39 Total: -0.82 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -4.56 Total: -8.39 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 2.38 Total: -44.65 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.95 -9.75 -44.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604290642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.470 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds