Wall clock time and date at job start Wed Apr 1 2020 01:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46914 * 2 1 4 4 C 1.46502 * 119.99833 * 275.34799 * 3 2 1 5 5 C 1.50700 * 109.47438 * 270.00596 * 4 3 2 6 6 H 1.07998 * 119.99882 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99922 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00411 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99729 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47358 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46947 * 119.99913 * 9 7 5 12 12 H 1.48500 * 109.47194 * 239.99961 * 9 7 5 13 13 C 1.34778 * 120.00363 * 95.35332 * 3 2 1 14 14 O 1.21282 * 120.00043 * 184.83073 * 13 3 2 15 15 C 1.50694 * 119.99987 * 4.83260 * 13 3 2 16 16 C 1.50705 * 115.56290 * 280.38926 * 15 13 3 17 17 C 1.38310 * 119.88700 * 138.91144 * 16 15 13 18 18 C 1.38029 * 120.11812 * 179.72549 * 17 16 15 19 19 C 1.39300 * 119.87711 * 0.56081 * 18 17 16 20 20 C 1.48470 * 120.11337 * 179.68271 * 19 18 17 21 21 N 1.34048 * 126.67427 * 180.02562 * 20 19 18 22 22 N 1.28986 * 107.26847 * 179.97438 * 21 20 19 23 23 N 1.28729 * 108.94073 * 0.02562 * 22 21 20 24 24 H 0.97007 * 125.33671 * 180.02562 * 23 22 21 25 25 N 1.28868 * 109.32204 * 359.74773 * 23 22 21 26 26 C 1.39292 * 119.77039 * 359.71088 * 19 18 17 27 27 C 1.38030 * 119.88210 * 359.97438 * 26 19 18 28 28 C 1.52993 * 117.50205 * 134.69422 * 15 13 3 29 29 C 1.53001 * 117.50028 * 66.06805 * 15 13 3 30 30 H 1.09005 * 109.47047 * 300.00220 * 1 2 3 31 31 H 1.08995 * 109.47050 * 60.00159 * 1 2 3 32 32 H 1.08999 * 109.47298 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47313 * 240.00134 * 2 1 3 34 34 H 1.09001 * 109.47259 * 119.99482 * 2 1 3 35 35 H 1.09003 * 109.46922 * 30.00463 * 4 3 2 36 36 H 1.09000 * 109.47415 * 149.99986 * 4 3 2 37 37 H 0.96993 * 120.00348 * 180.02562 * 8 7 5 38 38 H 1.08003 * 119.93703 * 359.97100 * 17 16 15 39 39 H 1.08002 * 120.05825 * 180.27747 * 18 17 16 40 40 H 1.08004 * 120.06265 * 179.97438 * 26 19 18 41 41 H 1.08003 * 119.94487 * 179.97438 * 27 26 19 42 42 H 1.09001 * 117.50150 * 359.97438 * 28 15 13 43 43 H 1.09002 * 117.50524 * 145.02092 * 28 15 13 44 44 H 1.09002 * 117.50428 * 214.97802 * 29 15 13 45 45 H 1.09002 * 117.49609 * 0.02562 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1510 2.1112 -1.2632 5 6 3.5301 1.8900 -1.8289 6 1 4.2373 1.2682 -1.3002 7 6 3.8894 2.4823 -3.0211 8 7 3.0285 3.2399 -3.6647 9 14 5.5992 2.2086 -3.7219 10 1 6.3706 1.3227 -2.8135 11 1 5.4900 1.5714 -5.0588 12 1 6.2961 3.5136 -3.8509 13 6 2.3456 1.9804 1.1621 14 8 2.6659 3.1501 1.1721 15 6 2.3137 1.1969 2.4489 16 6 0.9497 1.0077 3.0614 17 6 0.6050 -0.2131 3.6126 18 6 -0.6408 -0.3898 4.1799 19 6 -1.5558 0.6605 4.1862 20 6 -2.8999 0.4740 4.7887 21 7 -3.8767 1.3888 4.8657 22 7 -4.8778 0.8310 5.4577 23 7 -4.5665 -0.3833 5.7504 24 1 -5.1459 -1.0182 6.2000 25 7 -3.3665 -0.6248 5.3474 26 6 -1.2056 1.8862 3.6247 27 6 0.0453 2.0543 3.0658 28 6 3.5002 1.3546 3.4018 29 6 3.3234 0.0584 2.6082 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.4054 1.7500 -1.9716 36 1 1.9975 3.1757 -1.0857 37 1 3.2812 3.6563 -4.5035 38 1 1.3134 -1.0283 3.6026 39 1 -0.9074 -1.3422 4.6140 40 1 -1.9114 2.7037 3.6266 41 1 0.3178 3.0041 2.6298 42 1 4.3043 2.0248 3.0977 43 1 3.2945 1.3217 4.4717 44 1 3.0013 -0.8271 3.1560 45 1 4.0111 -0.1235 1.7823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604290642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:34 Heat of formation + Delta-G solvation = 120.991081 kcal Electronic energy + Delta-G solvation = -29424.106633 eV Core-core repulsion = 25444.733607 eV Total energy + Delta-G solvation = -3979.373026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.44844 -41.67266 -39.89376 -37.58607 -36.94760 -35.35315 -34.83055 -34.46422 -32.00943 -31.64051 -31.28083 -29.34324 -26.53229 -25.79366 -25.36144 -24.56458 -23.74858 -23.26688 -22.84452 -22.00597 -20.16422 -19.66108 -18.58810 -18.26497 -18.12677 -17.64484 -17.27393 -16.57561 -16.34819 -15.97934 -15.68768 -15.32853 -15.06453 -14.84016 -14.68579 -14.45091 -14.13608 -14.02545 -13.97750 -13.54698 -13.40444 -13.25567 -13.10693 -12.88110 -12.66456 -12.57766 -12.45361 -12.40150 -12.25634 -12.17925 -12.11972 -11.99981 -11.85825 -11.69261 -11.47639 -11.29961 -10.65514 -10.50024 -9.94103 -9.48264 -9.39737 -8.22476 -6.37820 -0.33283 0.17694 0.41767 1.27778 1.36408 1.38806 1.44513 1.50648 1.76677 2.23518 2.41686 2.60794 2.67128 2.97629 3.07093 3.17844 3.47896 3.61090 3.87204 3.94680 4.03073 4.12389 4.20470 4.22101 4.39661 4.44458 4.45937 4.57723 4.61549 4.69508 4.74029 4.90792 4.96165 4.96756 4.99109 5.05698 5.08825 5.21693 5.23383 5.37911 5.38786 5.42880 5.58371 5.59880 5.64217 5.86604 5.87839 6.05577 6.70084 6.80593 7.12968 7.27462 7.47257 8.85134 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019995 B = 0.002661 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.980135 B =10521.622470 C =11030.260602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.261 3.739 5 C -0.539 4.539 6 H 0.057 0.943 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.270 1.270 12 H -0.283 1.283 13 C 0.539 3.461 14 O -0.598 6.598 15 C -0.138 4.138 16 C -0.009 4.009 17 C -0.105 4.105 18 C -0.061 4.061 19 C -0.032 4.032 20 C 0.213 3.787 21 N -0.301 5.301 22 N -0.059 5.059 23 N -0.199 5.199 24 H 0.495 0.505 25 N -0.288 5.288 26 C -0.074 4.074 27 C -0.127 4.127 28 C -0.135 4.135 29 C -0.135 4.135 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.019 0.981 36 H -0.007 1.007 37 H 0.267 0.733 38 H 0.170 0.830 39 H 0.161 0.839 40 H 0.130 0.870 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.132 0.868 44 H 0.154 0.846 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.819 -16.820 21.476 29.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.020 4.020 3 N -0.321 5.321 4 C 0.140 3.860 5 C -0.578 4.578 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.794 3.206 10 H -0.187 1.187 11 H -0.195 1.195 12 H -0.209 1.209 13 C 0.327 3.673 14 O -0.480 6.480 15 C -0.141 4.141 16 C -0.010 4.010 17 C -0.122 4.122 18 C -0.081 4.081 19 C -0.036 4.036 20 C -0.066 4.066 21 N -0.173 5.173 22 N -0.054 5.054 23 N -0.050 5.050 24 H 0.354 0.646 25 N -0.140 5.140 26 C -0.094 4.094 27 C -0.145 4.145 28 C -0.172 4.172 29 C -0.172 4.172 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.037 0.963 36 H 0.012 0.988 37 H 0.076 0.924 38 H 0.187 0.813 39 H 0.179 0.821 40 H 0.148 0.852 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.150 0.850 44 H 0.171 0.829 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.346 -15.939 21.471 29.048 hybrid contribution 0.604 0.670 -1.036 1.374 sum -10.743 -15.268 20.435 27.679 Atomic orbital electron populations 1.22151 0.95343 1.03234 1.01181 1.21751 0.94801 0.81477 1.03967 1.48165 1.62505 1.15121 1.06357 1.18711 0.95982 0.90901 0.80421 1.21710 0.99281 1.30482 1.06290 0.92501 1.25905 1.01833 0.94430 0.97168 1.70072 1.37082 1.32817 1.17020 0.85338 0.78824 0.78012 0.78468 1.18675 1.19467 1.20911 1.20015 0.76054 0.86338 0.84876 1.90626 1.50826 1.19127 1.87394 1.20015 0.92228 1.06566 0.95280 1.18848 0.91358 0.94419 0.96396 1.21206 0.97087 0.96278 0.97641 1.21323 0.91772 0.98317 0.96673 1.17312 0.88085 0.95765 1.02405 1.23770 0.96928 0.85987 0.99955 1.76111 0.98046 1.26736 1.16446 1.78872 1.20559 0.94105 1.11869 1.47801 1.09528 1.10653 1.37026 0.64588 1.74866 0.97221 1.24908 1.17024 1.21030 0.95730 0.96820 0.95811 1.20850 0.94009 0.99001 1.00658 1.23149 0.95722 0.99961 0.98389 1.23428 0.98039 0.93049 1.02655 0.92827 0.94825 0.88674 0.91136 0.87434 0.96281 0.98848 0.92440 0.81258 0.82146 0.85235 0.88283 0.90126 0.84968 0.82856 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.56 10.22 71.98 0.74 -3.83 16 2 C 0.10 3.26 5.87 86.38 0.51 3.76 16 3 N -0.59 -25.85 2.46 -826.15 -2.03 -27.88 16 4 C 0.26 14.54 5.22 85.63 0.45 14.99 16 5 C -0.54 -31.35 9.39 25.60 0.24 -31.11 16 6 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 7 C 0.01 0.31 5.46 84.66 0.46 0.78 16 8 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 9 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 C 0.54 23.16 6.03 87.65 0.53 23.69 16 14 O -0.60 -32.37 16.55 -3.04 -0.05 -32.42 16 15 C -0.14 -3.98 1.17 -53.68 -0.06 -4.04 16 16 C -0.01 -0.22 3.92 -19.83 -0.08 -0.29 16 17 C -0.10 -1.68 9.37 22.24 0.21 -1.47 16 18 C -0.06 -0.96 9.70 22.48 0.22 -0.75 16 19 C -0.03 -0.68 5.88 -20.04 -0.12 -0.80 16 20 C 0.21 4.50 7.94 137.38 1.09 5.59 16 21 N -0.30 -7.16 12.23 -52.17 -0.64 -7.80 16 22 N -0.06 -1.10 13.47 37.02 0.50 -0.60 16 23 N -0.20 -2.27 7.90 37.02 0.29 -1.98 16 24 H 0.49 0.41 8.96 -347.53 -3.12 -2.71 16 25 N -0.29 -4.58 12.08 -52.12 -0.63 -5.21 16 26 C -0.07 -1.84 9.70 22.47 0.22 -1.63 16 27 C -0.13 -3.62 8.73 22.24 0.19 -3.43 16 28 C -0.13 -3.30 9.85 30.59 0.30 -3.00 16 29 C -0.14 -2.76 7.78 30.60 0.24 -2.52 16 30 H 0.05 1.54 6.25 -2.38 -0.01 1.52 16 31 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 2.34 8.11 -2.39 -0.02 2.32 16 34 H 0.11 2.62 5.14 -2.39 -0.01 2.61 16 35 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 36 H -0.01 -0.43 7.36 -2.39 -0.02 -0.45 16 37 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.17 1.49 5.97 -2.91 -0.02 1.47 16 39 H 0.16 1.70 7.88 -2.91 -0.02 1.68 16 40 H 0.13 3.27 7.89 -2.91 -0.02 3.25 16 41 H 0.10 3.48 7.67 -2.91 -0.02 3.45 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.15 1.63 6.13 -2.39 -0.01 1.62 16 45 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -83.55 381.32 2.82 -80.74 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -2.07 Total: 9.09 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 5.13 Total: -4.05 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -2.22 Total: -100.48 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.05 Total: -32.42 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -83.55 2.82 -80.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604290642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.729 kcal (2) G-P(sol) polarization free energy of solvation -83.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds