Wall clock time and date at job start Wed Apr 1 2020 01:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46951 * 2 1 4 4 C 1.46500 * 120.00219 * 270.00137 * 3 2 1 5 5 C 1.50693 * 109.47490 * 270.00162 * 4 3 2 6 6 H 1.08011 * 119.99931 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00605 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99656 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00510 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47175 * 89.99981 * 9 7 5 11 11 H 1.48502 * 109.47027 * 209.99733 * 9 7 5 12 12 H 1.48501 * 109.46831 * 329.99708 * 9 7 5 13 13 C 1.34777 * 119.99643 * 90.00152 * 3 2 1 14 14 O 1.21287 * 119.99407 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00339 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.47402 * 179.97438 * 15 13 3 17 17 C 1.34230 * 117.00173 * 179.97438 * 16 15 13 18 18 O 1.20822 * 120.00010 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99763 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.47318 * 299.99486 * 19 17 16 21 21 C 1.52997 * 109.47238 * 60.00276 * 19 17 16 22 22 C 1.52996 * 109.46947 * 179.97438 * 21 19 17 23 23 C 1.52993 * 109.47476 * 299.99661 * 22 21 19 24 24 H 1.08996 * 109.47340 * 300.00521 * 23 22 21 25 25 C 1.50696 * 109.47436 * 179.97438 * 23 22 21 26 26 O 1.20824 * 120.00671 * 240.00009 * 25 23 22 27 27 O 1.34233 * 119.99766 * 60.00659 * 25 23 22 28 28 C 1.53002 * 109.47066 * 60.00101 * 23 22 21 29 29 C 1.52996 * 109.47217 * 300.00453 * 28 23 22 30 30 H 1.09005 * 109.46585 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46685 * 299.99488 * 1 2 3 32 32 H 1.08994 * 109.47722 * 60.00088 * 1 2 3 33 33 H 1.08998 * 109.47121 * 240.00345 * 2 1 3 34 34 H 1.09001 * 109.47428 * 120.00108 * 2 1 3 35 35 H 1.09004 * 109.46752 * 30.00112 * 4 3 2 36 36 H 1.09003 * 109.47140 * 149.99803 * 4 3 2 37 37 H 0.96992 * 119.99943 * 180.02562 * 8 7 5 38 38 H 1.09003 * 109.47604 * 59.99369 * 15 13 3 39 39 H 1.09003 * 109.46753 * 299.99288 * 15 13 3 40 40 H 1.09001 * 109.46832 * 299.99686 * 21 19 17 41 41 H 1.09004 * 109.47261 * 59.99705 * 21 19 17 42 42 H 1.09000 * 109.46870 * 179.97438 * 22 21 19 43 43 H 1.08996 * 109.47261 * 60.00229 * 22 21 19 44 44 H 0.96705 * 117.00156 * 180.02562 * 27 25 23 45 45 H 1.09001 * 109.47600 * 179.97438 * 28 23 22 46 46 H 1.09004 * 109.47006 * 60.00028 * 28 23 22 47 47 H 1.09004 * 109.46785 * 299.99710 * 29 28 23 48 48 H 1.09004 * 109.47694 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8352 -1.7038 6 1 4.3428 1.2310 -1.0959 7 6 4.1492 2.3907 -2.8775 8 7 3.3491 3.1269 -3.6176 9 14 5.9132 2.0967 -3.4172 10 1 5.9758 0.8763 -4.2609 11 1 6.3927 3.2643 -4.1995 12 1 6.7734 1.9158 -2.2203 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9924 1.3059 2.4723 16 8 2.3073 2.1953 3.5759 17 6 2.1364 1.7115 4.8163 18 8 1.7363 0.5825 4.9746 19 6 2.4423 2.5771 6.0115 20 1 3.4910 2.8734 5.9867 21 6 1.5586 3.8256 5.9766 22 6 1.8688 4.7040 7.1903 23 6 1.5907 3.9180 8.4732 24 1 0.5421 3.6217 8.4976 25 6 1.8968 4.7830 9.6686 26 8 2.7354 4.4363 10.4664 27 8 1.2378 5.9387 9.8471 28 6 2.4744 2.6695 8.5081 29 6 2.1643 1.7911 7.2944 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.5816 1.6878 -2.0283 36 1 2.0954 3.1412 -1.1383 37 1 3.6751 3.5174 -4.4434 38 1 2.6228 0.4186 2.5298 39 1 0.9445 1.0115 2.5302 40 1 1.7564 4.3853 5.0625 41 1 0.5099 3.5293 6.0015 42 1 1.2395 5.5936 7.1652 43 1 2.9174 5.0003 7.1658 44 1 1.4688 6.4597 10.6284 45 1 2.2767 2.1098 9.4222 46 1 3.5231 2.9659 8.4836 47 1 1.1156 1.4948 7.3188 48 1 2.7942 0.9018 7.3189 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605436742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:51 Heat of formation + Delta-G solvation = -234.462315 kcal Electronic energy + Delta-G solvation = -29900.944606 eV Core-core repulsion = 25534.263542 eV Total energy + Delta-G solvation = -4366.681064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.16463 -40.58404 -39.10993 -38.11677 -36.53123 -36.34634 -35.32304 -32.86825 -32.22177 -31.24757 -30.20232 -29.17137 -26.72727 -25.56188 -23.31145 -23.09691 -22.76042 -22.20309 -20.78094 -20.09053 -18.70026 -18.41291 -17.81212 -17.17613 -16.82815 -16.71315 -16.44103 -16.09236 -15.91548 -15.35603 -15.02526 -14.55427 -14.44094 -14.17956 -14.00646 -13.76618 -13.47621 -13.16087 -12.96919 -12.88643 -12.70555 -12.51075 -12.16156 -12.07958 -11.98835 -11.89484 -11.76259 -11.64921 -11.54766 -11.25466 -10.98095 -10.95760 -10.90489 -10.83254 -10.63431 -10.60813 -10.53594 -10.38432 -10.16671 -9.68269 -9.01901 -8.46744 -7.77812 -6.07848 -4.12736 1.78771 2.10209 2.41658 2.61735 3.22614 3.28543 3.35494 3.40323 3.81999 4.09057 4.17928 4.33207 4.42383 4.54903 4.63500 4.76973 4.85269 4.86759 4.91544 5.00832 5.04684 5.13078 5.18956 5.26857 5.33386 5.36733 5.40743 5.51342 5.56164 5.65235 5.68395 5.70580 5.74798 5.88263 5.94151 5.97299 6.09485 6.16711 6.35719 6.42276 6.97308 7.37151 7.44727 7.47649 7.66903 7.88257 8.18207 8.27334 8.82224 8.97050 9.52377 11.00312 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016943 B = 0.002100 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.172451 B =13331.122814 C =14052.691289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.049 3.951 16 O -0.327 6.327 17 C 0.464 3.536 18 O -0.511 6.511 19 C -0.081 4.081 20 H 0.113 0.887 21 C -0.112 4.112 22 C -0.109 4.109 23 C -0.083 4.083 24 H 0.112 0.888 25 C 0.483 3.517 26 O -0.515 6.515 27 O -0.516 6.516 28 C -0.103 4.103 29 C -0.102 4.102 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.045 0.955 37 H 0.264 0.736 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.410 0.590 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 -1.089 23.738 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.395 6.395 15 C -0.028 4.028 16 O -0.242 6.242 17 C 0.307 3.693 18 O -0.400 6.400 19 C -0.100 4.100 20 H 0.131 0.869 21 C -0.150 4.150 22 C -0.146 4.146 23 C -0.102 4.102 24 H 0.130 0.870 25 C 0.326 3.674 26 O -0.403 6.403 27 O -0.327 6.327 28 C -0.141 4.141 29 C -0.140 4.140 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.268 0.732 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.140 -1.025 23.416 24.502 hybrid contribution 1.056 -0.095 0.056 1.062 sum -6.084 -1.120 23.473 24.274 Atomic orbital electron populations 1.22231 0.96529 1.01694 1.02401 1.21509 0.93757 0.83966 1.03023 1.48216 1.63808 1.13392 1.07163 1.19329 0.96472 0.93699 0.77564 1.21420 0.96842 1.32059 1.06365 0.92410 1.24937 0.97935 0.94848 0.96376 1.69930 1.35727 1.33316 1.14321 0.86482 0.84565 0.77694 0.78604 1.20625 1.21052 1.19878 1.19716 0.79717 0.87159 0.84302 1.90716 1.44485 1.17520 1.86750 1.22968 1.02648 0.92694 0.84536 1.86567 1.78318 1.44916 1.14361 1.23756 0.74063 0.86805 0.84665 1.90653 1.42454 1.20112 1.86746 1.21153 1.03567 0.95409 0.89911 0.86865 1.21560 0.99574 0.94373 0.99455 1.21539 1.03355 0.98311 0.91400 1.21185 1.03536 0.94457 0.91003 0.86966 1.23569 0.77629 0.79594 0.86657 1.90730 1.32256 1.71966 1.45372 1.84551 1.63649 1.33993 1.50543 1.21475 1.00039 0.93911 0.98666 1.21459 1.03657 0.97886 0.90986 0.91899 0.93155 0.91774 0.89419 0.91768 0.94644 0.93704 0.92661 0.88744 0.88797 0.88958 0.90769 0.89644 0.90677 0.73173 0.90250 0.90458 0.90483 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.10 1.57 5.93 -4.04 -0.02 1.55 16 3 N -0.59 -12.20 2.46 -175.06 -0.43 -12.63 16 4 C 0.25 6.33 5.16 -5.20 -0.03 6.30 16 5 C -0.53 -14.74 9.39 -34.45 -0.32 -15.06 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 9 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.51 10.49 7.75 -10.99 -0.09 10.41 16 14 O -0.52 -13.10 16.08 -14.11 -0.23 -13.32 16 15 C 0.05 0.77 4.50 36.00 0.16 0.93 16 16 O -0.33 -5.14 9.66 -45.90 -0.44 -5.59 16 17 C 0.46 6.02 7.26 36.01 0.26 6.28 16 18 O -0.51 -7.44 15.73 -18.75 -0.29 -7.73 16 19 C -0.08 -0.74 2.63 -91.77 -0.24 -0.98 16 20 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 21 C -0.11 -0.88 5.14 -26.73 -0.14 -1.02 16 22 C -0.11 -0.69 5.13 -26.74 -0.14 -0.83 16 23 C -0.08 -0.53 2.63 -91.78 -0.24 -0.77 16 24 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 25 C 0.48 3.71 7.63 36.00 0.27 3.99 16 26 O -0.52 -5.57 16.74 -18.75 -0.31 -5.88 16 27 O -0.52 -2.93 13.33 -39.27 -0.52 -3.45 16 28 C -0.10 -0.71 4.49 -26.73 -0.12 -0.83 16 29 C -0.10 -0.79 4.49 -26.73 -0.12 -0.91 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.62 7.22 -51.93 -0.38 0.25 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 34 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 35 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 36 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.09 1.36 7.39 -51.93 -0.38 0.98 16 39 H 0.09 1.29 7.18 -51.93 -0.37 0.91 16 40 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.41 0.75 9.10 45.56 0.41 1.17 16 45 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 46 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 47 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 48 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 400.45 15.07 6.03 6.03 Total: -1.00 -36.35 400.45 -7.84 -44.19 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.88 Total: -1.65 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -0.48 Total: 8.86 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.31 Total: -38.12 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -1.80 Total: -35.97 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.35 -7.84 -44.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605436742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.269 kcal (2) G-P(sol) polarization free energy of solvation -36.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds