Wall clock time and date at job start Wed Apr 1 2020 01:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46951 * 2 1 4 4 C 1.46500 * 120.00219 * 270.00137 * 3 2 1 5 5 C 1.50693 * 109.47490 * 270.00162 * 4 3 2 6 6 H 1.08011 * 119.99931 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00605 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99656 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00510 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47175 * 89.99981 * 9 7 5 11 11 H 1.48502 * 109.47027 * 209.99733 * 9 7 5 12 12 H 1.48501 * 109.46831 * 329.99708 * 9 7 5 13 13 C 1.34777 * 119.99643 * 90.00152 * 3 2 1 14 14 O 1.21287 * 119.99407 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00339 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.47402 * 179.97438 * 15 13 3 17 17 C 1.34230 * 117.00173 * 179.97438 * 16 15 13 18 18 O 1.20822 * 120.00010 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99763 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.47318 * 299.99486 * 19 17 16 21 21 C 1.52997 * 109.47238 * 60.00276 * 19 17 16 22 22 C 1.52996 * 109.46947 * 179.97438 * 21 19 17 23 23 C 1.52993 * 109.47476 * 299.99661 * 22 21 19 24 24 H 1.08996 * 109.47340 * 300.00521 * 23 22 21 25 25 C 1.50696 * 109.47436 * 179.97438 * 23 22 21 26 26 O 1.20824 * 120.00671 * 240.00009 * 25 23 22 27 27 O 1.34233 * 119.99766 * 60.00659 * 25 23 22 28 28 C 1.53002 * 109.47066 * 60.00101 * 23 22 21 29 29 C 1.52996 * 109.47217 * 300.00453 * 28 23 22 30 30 H 1.09005 * 109.46585 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46685 * 299.99488 * 1 2 3 32 32 H 1.08994 * 109.47722 * 60.00088 * 1 2 3 33 33 H 1.08998 * 109.47121 * 240.00345 * 2 1 3 34 34 H 1.09001 * 109.47428 * 120.00108 * 2 1 3 35 35 H 1.09004 * 109.46752 * 30.00112 * 4 3 2 36 36 H 1.09003 * 109.47140 * 149.99803 * 4 3 2 37 37 H 0.96992 * 119.99943 * 180.02562 * 8 7 5 38 38 H 1.09003 * 109.47604 * 59.99369 * 15 13 3 39 39 H 1.09003 * 109.46753 * 299.99288 * 15 13 3 40 40 H 1.09001 * 109.46832 * 299.99686 * 21 19 17 41 41 H 1.09004 * 109.47261 * 59.99705 * 21 19 17 42 42 H 1.09000 * 109.46870 * 179.97438 * 22 21 19 43 43 H 1.08996 * 109.47261 * 60.00229 * 22 21 19 44 44 H 0.96705 * 117.00156 * 180.02562 * 27 25 23 45 45 H 1.09001 * 109.47600 * 179.97438 * 28 23 22 46 46 H 1.09004 * 109.47006 * 60.00028 * 28 23 22 47 47 H 1.09004 * 109.46785 * 299.99710 * 29 28 23 48 48 H 1.09004 * 109.47694 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8352 -1.7038 6 1 4.3428 1.2310 -1.0959 7 6 4.1492 2.3907 -2.8775 8 7 3.3491 3.1269 -3.6176 9 14 5.9132 2.0967 -3.4172 10 1 5.9758 0.8763 -4.2609 11 1 6.3927 3.2643 -4.1995 12 1 6.7734 1.9158 -2.2203 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9924 1.3059 2.4723 16 8 2.3073 2.1953 3.5759 17 6 2.1364 1.7115 4.8163 18 8 1.7363 0.5825 4.9746 19 6 2.4423 2.5771 6.0115 20 1 3.4910 2.8734 5.9867 21 6 1.5586 3.8256 5.9766 22 6 1.8688 4.7040 7.1903 23 6 1.5907 3.9180 8.4732 24 1 0.5421 3.6217 8.4976 25 6 1.8968 4.7830 9.6686 26 8 2.7354 4.4363 10.4664 27 8 1.2378 5.9387 9.8471 28 6 2.4744 2.6695 8.5081 29 6 2.1643 1.7911 7.2944 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.5816 1.6878 -2.0283 36 1 2.0954 3.1412 -1.1383 37 1 3.6751 3.5174 -4.4434 38 1 2.6228 0.4186 2.5298 39 1 0.9445 1.0115 2.5302 40 1 1.7564 4.3853 5.0625 41 1 0.5099 3.5293 6.0015 42 1 1.2395 5.5936 7.1652 43 1 2.9174 5.0003 7.1658 44 1 1.4688 6.4597 10.6284 45 1 2.2767 2.1098 9.4222 46 1 3.5231 2.9659 8.4836 47 1 1.1156 1.4948 7.3188 48 1 2.7942 0.9018 7.3189 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605436742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:50 Heat of formation + Delta-G solvation = -257.088584 kcal Electronic energy + Delta-G solvation = -29901.925755 eV Core-core repulsion = 25534.263542 eV Total energy + Delta-G solvation = -4367.662213 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.02941 -41.40818 -40.61349 -38.88720 -37.53624 -37.06809 -36.95350 -34.93679 -32.92530 -31.84863 -31.71959 -30.59111 -28.45647 -26.40655 -24.88817 -24.20373 -23.76043 -23.08422 -21.57488 -20.74499 -20.24404 -18.99063 -18.90220 -18.61768 -18.09659 -17.80578 -17.69927 -17.35156 -16.91400 -16.78881 -16.24291 -15.98738 -15.33465 -15.14491 -14.92671 -14.74311 -14.60489 -14.46403 -14.17886 -13.84457 -13.72564 -13.57797 -13.41985 -13.28551 -13.26779 -13.07183 -12.68715 -12.61257 -12.55263 -12.50276 -12.39389 -12.22316 -12.13389 -12.04391 -11.78591 -11.71485 -11.61498 -11.53436 -11.23609 -11.20846 -10.71090 -10.64185 -9.53917 -8.23285 -6.37611 1.08745 1.21386 1.28682 1.37143 1.39903 1.50106 1.63289 2.14371 2.32916 2.45955 3.06750 3.42243 3.48676 3.52183 3.63053 3.87395 3.92791 3.99438 4.01295 4.14236 4.17315 4.28996 4.30443 4.38412 4.45854 4.51447 4.59190 4.75328 4.82227 4.88970 4.94395 4.95054 5.03228 5.09407 5.12044 5.15307 5.19953 5.27113 5.32040 5.36345 5.37942 5.54483 5.65064 5.80015 6.04318 6.54993 6.67244 6.71899 7.01612 7.22016 7.37093 8.84083 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016943 B = 0.002100 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.172451 B =13331.122814 C =14052.691289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.596 5.596 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.499 3.501 14 O -0.577 6.577 15 C 0.061 3.939 16 O -0.347 6.347 17 C 0.466 3.534 18 O -0.525 6.525 19 C -0.079 4.079 20 H 0.121 0.879 21 C -0.108 4.108 22 C -0.101 4.101 23 C -0.081 4.081 24 H 0.131 0.869 25 C 0.489 3.511 26 O -0.551 6.551 27 O -0.512 6.512 28 C -0.098 4.098 29 C -0.094 4.094 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.029 0.971 36 H 0.000 1.000 37 H 0.268 0.732 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.426 0.574 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 -2.454 25.205 26.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.199 1.199 13 C 0.286 3.714 14 O -0.456 6.456 15 C -0.016 4.016 16 O -0.263 6.263 17 C 0.310 3.690 18 O -0.414 6.414 19 C -0.098 4.098 20 H 0.139 0.861 21 C -0.146 4.146 22 C -0.139 4.139 23 C -0.100 4.100 24 H 0.149 0.851 25 C 0.333 3.667 26 O -0.442 6.442 27 O -0.325 6.325 28 C -0.135 4.135 29 C -0.131 4.131 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.047 0.953 36 H 0.018 0.982 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.139 0.861 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.288 0.712 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.099 0.901 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.404 -2.425 24.904 26.094 hybrid contribution 1.064 0.356 -0.369 1.182 sum -6.340 -2.069 24.534 25.424 Atomic orbital electron populations 1.22172 0.94286 1.03765 1.01865 1.21859 0.95588 0.81019 1.04336 1.48212 1.63635 1.15230 1.05735 1.18781 0.95527 0.91683 0.79793 1.21694 0.97828 1.32122 1.06604 0.92812 1.25846 1.02365 0.94451 0.96450 1.70045 1.37746 1.34076 1.14782 0.85418 0.79016 0.78202 0.78193 1.18803 1.20646 1.19852 1.20571 0.78307 0.86667 0.85852 1.90679 1.47059 1.20154 1.87757 1.22799 1.04605 0.92053 0.82104 1.86586 1.78856 1.45558 1.15295 1.24446 0.73230 0.87034 0.84290 1.90639 1.43255 1.20854 1.86694 1.21322 1.04300 0.95483 0.88691 0.86123 1.21524 0.99794 0.93774 0.99464 1.21474 1.03507 0.98273 0.90628 1.21205 1.04441 0.93948 0.90374 0.85119 1.23716 0.76836 0.79793 0.86347 1.90724 1.33881 1.72870 1.46744 1.84516 1.63059 1.33433 1.51540 1.21397 0.99849 0.94060 0.98196 1.21402 1.03755 0.97611 0.90365 0.88441 0.92342 0.93700 0.90094 0.88453 0.95290 0.98184 0.92358 0.86761 0.86086 0.90521 0.89917 0.88686 0.90859 0.71232 0.90048 0.91083 0.90134 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 10.24 71.98 0.74 -3.14 16 2 C 0.09 2.77 5.93 86.38 0.51 3.28 16 3 N -0.60 -24.83 2.46 -826.15 -2.03 -26.86 16 4 C 0.26 13.99 5.16 85.63 0.44 14.43 16 5 C -0.54 -31.07 9.39 25.60 0.24 -30.83 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.46 5.46 84.65 0.46 0.92 16 8 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 9 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 C 0.50 20.91 7.75 87.65 0.68 21.59 16 14 O -0.58 -30.32 16.08 15.74 0.25 -30.07 16 15 C 0.06 1.84 4.50 71.23 0.32 2.16 16 16 O -0.35 -10.66 9.66 -45.06 -0.44 -11.10 16 17 C 0.47 11.41 7.26 71.24 0.52 11.92 16 18 O -0.53 -14.20 15.73 21.98 0.35 -13.85 16 19 C -0.08 -1.33 2.63 -11.54 -0.03 -1.36 16 20 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 21 C -0.11 -1.56 5.14 30.59 0.16 -1.40 16 22 C -0.10 -1.12 5.13 30.59 0.16 -0.96 16 23 C -0.08 -0.86 2.63 -11.54 -0.03 -0.90 16 24 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 25 C 0.49 6.71 7.63 71.23 0.54 7.25 16 26 O -0.55 -11.37 16.74 21.97 0.37 -11.01 16 27 O -0.51 -4.76 13.33 -51.45 -0.69 -5.45 16 28 C -0.10 -1.19 4.49 30.59 0.14 -1.05 16 29 C -0.09 -1.29 4.49 30.59 0.14 -1.15 16 30 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.06 1.30 7.22 -2.39 -0.02 1.28 16 32 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 34 H 0.10 2.23 6.44 -2.39 -0.02 2.22 16 35 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 36 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 37 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.11 3.00 7.39 -2.39 -0.02 2.98 16 39 H 0.12 2.99 7.18 -2.39 -0.02 2.97 16 40 H 0.08 1.38 8.11 -2.39 -0.02 1.36 16 41 H 0.08 1.05 8.14 -2.38 -0.02 1.04 16 42 H 0.09 0.91 8.11 -2.39 -0.02 0.89 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.43 0.77 9.10 -74.05 -0.67 0.09 16 45 H 0.08 0.99 8.10 -2.39 -0.02 0.97 16 46 H 0.07 0.97 8.10 -2.38 -0.02 0.95 16 47 H 0.08 1.07 8.10 -2.38 -0.02 1.05 16 48 H 0.08 1.14 8.10 -2.39 -0.02 1.12 16 Total: -1.00 -81.39 400.45 5.41 -75.98 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.30 Total: 10.21 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: 4.98 Total: 20.77 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -1.74 Total: -82.17 kcal Atomic # 8 Polarization: -71.32 SS G_CDS: -0.15 Total: -71.48 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -81.39 5.41 -75.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605436742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.107 kcal (2) G-P(sol) polarization free energy of solvation -81.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -257.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds