Wall clock time and date at job start Wed Apr 1 2020 01:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47562 * 2 1 4 4 C 1.46506 * 119.99955 * 89.99893 * 3 2 1 5 5 C 1.50700 * 109.46957 * 90.00092 * 4 3 2 6 6 H 1.08002 * 119.99770 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00083 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00147 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00278 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47228 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46793 * 300.00001 * 9 7 5 12 12 H 1.48500 * 109.47000 * 60.00094 * 9 7 5 13 13 C 1.34777 * 120.00353 * 270.00319 * 3 2 1 14 14 O 1.21283 * 120.00171 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99512 * 359.97438 * 13 3 2 16 16 H 1.08998 * 115.55218 * 34.27939 * 15 13 3 17 17 C 1.53009 * 117.49707 * 248.60816 * 15 13 3 18 18 C 1.53000 * 59.99953 * 252.51551 * 17 15 13 19 19 H 1.08998 * 117.50231 * 107.48918 * 18 17 15 20 20 C 1.50700 * 117.49588 * 252.51481 * 18 17 15 21 21 C 1.38335 * 119.94252 * 8.61435 * 20 18 17 22 22 C 1.38293 * 120.23640 * 179.97438 * 21 20 18 23 23 C 1.38047 * 120.12157 * 0.05477 * 22 21 20 24 24 C 1.39282 * 119.87869 * 359.97194 * 23 22 21 25 25 C 1.48462 * 120.11911 * 180.02562 * 24 23 22 26 26 N 1.34046 * 126.67635 * 179.68979 * 25 24 23 27 27 N 1.28981 * 107.27043 * 179.83193 * 26 25 24 28 28 N 1.28730 * 108.94186 * 0.43471 * 27 26 25 29 29 H 0.97006 * 125.34112 * 179.75183 * 28 27 26 30 30 N 1.28870 * 109.31793 * 359.71766 * 28 27 26 31 31 C 1.38008 * 119.93939 * 188.34811 * 20 18 17 32 32 H 1.09002 * 109.47574 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46984 * 299.99913 * 1 2 3 34 34 H 1.09005 * 109.46809 * 59.99676 * 1 2 3 35 35 H 1.09005 * 109.46842 * 239.99554 * 2 1 3 36 36 H 1.09005 * 109.46809 * 120.00324 * 2 1 3 37 37 H 1.08994 * 109.47197 * 330.00481 * 4 3 2 38 38 H 1.08998 * 109.47414 * 210.00162 * 4 3 2 39 39 H 0.97005 * 119.99661 * 359.97438 * 8 7 5 40 40 H 1.09003 * 117.49620 * 0.02562 * 17 15 13 41 41 H 1.08995 * 117.49693 * 145.02035 * 17 15 13 42 42 H 1.08000 * 119.88134 * 359.97438 * 21 20 18 43 43 H 1.08005 * 119.94311 * 180.02562 * 22 21 20 44 44 H 1.08003 * 120.06617 * 179.97438 * 23 22 21 45 45 H 1.07997 * 120.06218 * 0.02562 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7038 6 1 4.3429 1.2306 1.0957 7 6 4.1492 2.3893 2.8780 8 7 3.3490 3.1246 3.6186 9 14 5.9137 2.0963 3.4169 10 1 6.1612 2.7962 4.7029 11 1 6.1417 0.6396 3.5936 12 1 6.8408 2.6206 2.3822 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1601 -1.1671 15 6 1.9923 1.3059 -2.4723 16 1 1.1574 0.6052 -2.4732 17 6 3.2091 0.9562 -3.3314 18 6 2.2661 2.0812 -3.7626 19 1 2.6275 3.1051 -3.6675 20 6 1.3605 1.8177 -4.9380 21 6 1.2723 0.5437 -5.4698 22 6 0.4428 0.2950 -6.5480 23 6 -0.3012 1.3183 -7.1002 24 6 -0.2158 2.6030 -6.5690 25 6 -1.0141 3.7074 -7.1583 26 7 -1.0374 4.9842 -6.7509 27 7 -1.8511 5.6184 -7.5251 28 7 -2.3383 4.7935 -8.3849 29 1 -2.9783 5.0185 -9.0783 30 7 -1.8420 3.6219 -8.1804 31 6 0.6164 2.8467 -5.4784 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.5818 1.6876 2.0284 38 1 2.0957 3.1409 1.1385 39 1 2.4329 3.2771 3.3386 40 1 4.1910 1.2397 -2.9523 41 1 3.1746 0.0256 -3.8977 42 1 1.8534 -0.2596 -5.0414 43 1 0.3773 -0.7016 -6.9592 44 1 -0.9484 1.1232 -7.9425 45 1 0.6829 3.8401 -5.0601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609223877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:42 Heat of formation + Delta-G solvation = 134.963306 kcal Electronic energy + Delta-G solvation = -28303.216362 eV Core-core repulsion = 24324.449217 eV Total energy + Delta-G solvation = -3978.767145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.74445 -40.19038 -39.05204 -36.53356 -35.27015 -34.65327 -33.74569 -33.01214 -31.21979 -30.54569 -30.05862 -27.08342 -25.26889 -24.80483 -24.21385 -23.30847 -23.03546 -22.34933 -21.79573 -20.29825 -19.39018 -18.41674 -17.50682 -17.43104 -16.80574 -16.45077 -15.76991 -15.64551 -15.13610 -14.79269 -14.30656 -14.15994 -13.81517 -13.71218 -13.50925 -13.43839 -13.34841 -12.67535 -12.46864 -12.35507 -12.27482 -11.97246 -11.77075 -11.69794 -11.55302 -11.49064 -11.38111 -11.27125 -11.08164 -10.97193 -10.70416 -10.60469 -10.48546 -10.35278 -10.08429 -9.12834 -9.04088 -9.00535 -8.69236 -8.36359 -7.61559 -6.36080 -4.07965 0.42916 0.90838 1.09997 1.92439 2.07546 3.09405 3.37184 3.43661 3.48068 3.49691 3.65792 3.80840 3.90569 4.16075 4.49724 4.56154 4.66058 4.80448 4.86156 4.90226 4.96079 5.06729 5.15120 5.18952 5.25625 5.35235 5.36391 5.39906 5.59647 5.62686 5.70490 5.73473 5.78727 5.98222 6.02526 6.06823 6.08752 6.16437 6.18128 6.21352 6.44140 6.45692 6.63985 6.84895 7.15944 7.43881 7.85186 8.06497 8.32370 8.45587 8.79982 9.04169 9.61823 11.01156 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016686 B = 0.002253 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.605502 B =12424.667110 C =12953.492095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 N -0.589 5.589 4 C 0.236 3.764 5 C -0.605 4.605 6 H 0.051 0.949 7 C 0.019 3.981 8 N -0.910 5.910 9 Si 1.071 2.929 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.534 3.466 14 O -0.540 6.540 15 C -0.169 4.169 16 H 0.121 0.879 17 C -0.145 4.145 18 C -0.093 4.093 19 H 0.130 0.870 20 C -0.045 4.045 21 C -0.099 4.099 22 C -0.119 4.119 23 C -0.086 4.086 24 C -0.020 4.020 25 C 0.223 3.777 26 N -0.264 5.264 27 N -0.048 5.048 28 N -0.230 5.230 29 H 0.475 0.525 30 N -0.297 5.297 31 C -0.065 4.065 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.021 0.979 38 H 0.033 0.967 39 H 0.267 0.733 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.058 -7.343 -25.405 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.016 4.016 3 N -0.320 5.320 4 C 0.117 3.883 5 C -0.643 4.643 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.546 5.546 9 Si 0.899 3.101 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.214 1.214 13 C 0.321 3.679 14 O -0.418 6.418 15 C -0.191 4.191 16 H 0.139 0.861 17 C -0.182 4.182 18 C -0.111 4.111 19 H 0.147 0.853 20 C -0.045 4.045 21 C -0.117 4.117 22 C -0.137 4.137 23 C -0.107 4.107 24 C -0.023 4.023 25 C -0.056 4.056 26 N -0.137 5.137 27 N -0.044 5.044 28 N -0.075 5.075 29 H 0.329 0.671 30 N -0.149 5.149 31 C -0.085 4.085 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.039 0.961 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.976 -5.742 -24.205 26.803 hybrid contribution -1.570 -0.748 -1.617 2.375 sum -11.546 -6.489 -25.822 29.021 Atomic orbital electron populations 1.22243 0.96855 1.01454 1.02304 1.21402 0.93354 0.84048 1.02768 1.47950 1.63673 1.13268 1.07094 1.19327 0.96891 0.93094 0.79014 1.22235 0.96912 1.35686 1.09502 0.93074 1.25809 1.05864 0.93515 0.93356 1.70802 1.07873 1.36301 1.39587 0.83512 0.74257 0.76020 0.76292 1.20688 1.21465 1.21406 1.19353 0.78207 0.86283 0.84083 1.90668 1.46069 1.18006 1.87029 1.22492 1.02128 1.03689 0.90751 0.86134 1.23102 0.94936 0.99084 1.01062 1.21064 0.99755 0.99237 0.91086 0.85261 1.19086 0.96591 0.93058 0.95770 1.21297 0.97960 0.96606 0.95858 1.21029 0.96912 0.99096 0.96694 1.21114 0.98851 0.91134 0.99560 1.17174 0.98251 0.89425 0.97484 1.23725 0.96884 0.92888 0.92130 1.76160 1.14040 1.03796 1.19716 1.78954 1.07043 1.19727 0.98628 1.47737 1.31615 1.02969 1.25220 0.67099 1.74897 1.13798 1.06619 1.19549 1.21046 0.93586 1.00240 0.93600 0.92078 0.92235 0.92944 0.91368 0.90082 0.96103 0.94920 0.92235 0.87521 0.87740 0.85155 0.85162 0.85129 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.12 37.16 0.38 -1.94 16 2 C 0.11 1.76 5.76 -4.05 -0.02 1.73 16 3 N -0.59 -12.60 2.46 -175.06 -0.43 -13.03 16 4 C 0.24 6.22 4.47 -5.19 -0.02 6.19 16 5 C -0.60 -17.40 9.39 -34.44 -0.32 -17.72 16 6 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 7 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 8 N -0.91 -28.00 13.65 55.43 0.76 -27.24 16 9 Si 1.07 25.74 29.90 -169.99 -5.08 20.66 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 13 C 0.53 11.22 7.46 -10.98 -0.08 11.14 16 14 O -0.54 -13.77 15.84 5.56 0.09 -13.69 16 15 C -0.17 -2.52 4.43 -91.76 -0.41 -2.93 16 16 H 0.12 1.53 6.48 -51.93 -0.34 1.20 16 17 C -0.14 -1.80 9.56 -26.73 -0.26 -2.05 16 18 C -0.09 -1.25 5.55 -91.77 -0.51 -1.76 16 19 H 0.13 2.00 7.67 -51.93 -0.40 1.60 16 20 C -0.04 -0.51 5.61 -104.67 -0.59 -1.10 16 21 C -0.10 -0.90 9.29 -39.53 -0.37 -1.27 16 22 C -0.12 -0.95 10.03 -39.63 -0.40 -1.35 16 23 C -0.09 -0.77 9.70 -39.26 -0.38 -1.15 16 24 C -0.02 -0.22 5.88 -104.89 -0.62 -0.84 16 25 C 0.22 2.56 7.94 -156.31 -1.24 1.31 16 26 N -0.26 -3.35 12.23 32.15 0.39 -2.96 16 27 N -0.05 -0.50 13.47 60.35 0.81 0.31 16 28 N -0.23 -1.62 7.90 60.35 0.48 -1.15 16 29 H 0.47 0.92 8.96 -340.36 -3.05 -2.13 16 30 N -0.30 -2.77 12.08 32.17 0.39 -2.38 16 31 C -0.06 -0.77 9.39 -39.26 -0.37 -1.14 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.69 7.46 -51.93 -0.39 0.30 16 35 H 0.07 0.92 6.64 -51.93 -0.34 0.58 16 36 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 37 H 0.02 0.55 7.94 -51.93 -0.41 0.14 16 38 H 0.03 0.96 7.29 -51.93 -0.38 0.59 16 39 H 0.27 8.19 7.22 -40.82 -0.29 7.89 16 40 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.10 0.95 6.17 -51.93 -0.32 0.63 16 42 H 0.13 0.96 6.01 -52.49 -0.32 0.65 16 43 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 44 H 0.13 0.97 7.88 -52.48 -0.41 0.55 16 45 H 0.14 1.75 7.89 -52.49 -0.41 1.33 16 LS Contribution 384.86 15.07 5.80 5.80 Total: -1.00 -36.99 384.86 -10.48 -47.47 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -8.38 Total: -1.37 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -5.30 Total: -12.42 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 2.40 Total: -46.45 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.69 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.99 -10.48 -47.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609223877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.431 kcal (2) G-P(sol) polarization free energy of solvation -36.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds