Wall clock time and date at job start Wed Apr 1 2020 01:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47562 * 2 1 4 4 C 1.46506 * 119.99955 * 89.99893 * 3 2 1 5 5 C 1.50700 * 109.46957 * 90.00092 * 4 3 2 6 6 H 1.08002 * 119.99770 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00083 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00147 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00278 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47228 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46793 * 300.00001 * 9 7 5 12 12 H 1.48500 * 109.47000 * 60.00094 * 9 7 5 13 13 C 1.34777 * 120.00353 * 270.00319 * 3 2 1 14 14 O 1.21283 * 120.00171 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99512 * 359.97438 * 13 3 2 16 16 H 1.08998 * 115.55218 * 34.27939 * 15 13 3 17 17 C 1.53009 * 117.49707 * 248.60816 * 15 13 3 18 18 C 1.53000 * 59.99953 * 252.51551 * 17 15 13 19 19 H 1.08998 * 117.50231 * 107.48918 * 18 17 15 20 20 C 1.50700 * 117.49588 * 252.51481 * 18 17 15 21 21 C 1.38335 * 119.94252 * 8.61435 * 20 18 17 22 22 C 1.38293 * 120.23640 * 179.97438 * 21 20 18 23 23 C 1.38047 * 120.12157 * 0.05477 * 22 21 20 24 24 C 1.39282 * 119.87869 * 359.97194 * 23 22 21 25 25 C 1.48462 * 120.11911 * 180.02562 * 24 23 22 26 26 N 1.34046 * 126.67635 * 179.68979 * 25 24 23 27 27 N 1.28981 * 107.27043 * 179.83193 * 26 25 24 28 28 N 1.28730 * 108.94186 * 0.43471 * 27 26 25 29 29 H 0.97006 * 125.34112 * 179.75183 * 28 27 26 30 30 N 1.28870 * 109.31793 * 359.71766 * 28 27 26 31 31 C 1.38008 * 119.93939 * 188.34811 * 20 18 17 32 32 H 1.09002 * 109.47574 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46984 * 299.99913 * 1 2 3 34 34 H 1.09005 * 109.46809 * 59.99676 * 1 2 3 35 35 H 1.09005 * 109.46842 * 239.99554 * 2 1 3 36 36 H 1.09005 * 109.46809 * 120.00324 * 2 1 3 37 37 H 1.08994 * 109.47197 * 330.00481 * 4 3 2 38 38 H 1.08998 * 109.47414 * 210.00162 * 4 3 2 39 39 H 0.97005 * 119.99661 * 359.97438 * 8 7 5 40 40 H 1.09003 * 117.49620 * 0.02562 * 17 15 13 41 41 H 1.08995 * 117.49693 * 145.02035 * 17 15 13 42 42 H 1.08000 * 119.88134 * 359.97438 * 21 20 18 43 43 H 1.08005 * 119.94311 * 180.02562 * 22 21 20 44 44 H 1.08003 * 120.06617 * 179.97438 * 23 22 21 45 45 H 1.07997 * 120.06218 * 0.02562 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7038 6 1 4.3429 1.2306 1.0957 7 6 4.1492 2.3893 2.8780 8 7 3.3490 3.1246 3.6186 9 14 5.9137 2.0963 3.4169 10 1 6.1612 2.7962 4.7029 11 1 6.1417 0.6396 3.5936 12 1 6.8408 2.6206 2.3822 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1601 -1.1671 15 6 1.9923 1.3059 -2.4723 16 1 1.1574 0.6052 -2.4732 17 6 3.2091 0.9562 -3.3314 18 6 2.2661 2.0812 -3.7626 19 1 2.6275 3.1051 -3.6675 20 6 1.3605 1.8177 -4.9380 21 6 1.2723 0.5437 -5.4698 22 6 0.4428 0.2950 -6.5480 23 6 -0.3012 1.3183 -7.1002 24 6 -0.2158 2.6030 -6.5690 25 6 -1.0141 3.7074 -7.1583 26 7 -1.0374 4.9842 -6.7509 27 7 -1.8511 5.6184 -7.5251 28 7 -2.3383 4.7935 -8.3849 29 1 -2.9783 5.0185 -9.0783 30 7 -1.8420 3.6219 -8.1804 31 6 0.6164 2.8467 -5.4784 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.5818 1.6876 2.0284 38 1 2.0957 3.1409 1.1385 39 1 2.4329 3.2771 3.3386 40 1 4.1910 1.2397 -2.9523 41 1 3.1746 0.0256 -3.8977 42 1 1.8534 -0.2596 -5.0414 43 1 0.3773 -0.7016 -6.9592 44 1 -0.9484 1.1232 -7.9425 45 1 0.6829 3.8401 -5.0601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609223877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:41 Heat of formation + Delta-G solvation = 110.561640 kcal Electronic energy + Delta-G solvation = -28304.274498 eV Core-core repulsion = 24324.449217 eV Total energy + Delta-G solvation = -3979.825281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.50770 -41.37444 -40.24055 -37.74936 -36.93227 -35.44251 -35.15891 -34.50824 -31.98623 -31.59551 -31.31866 -28.99252 -26.12445 -25.90911 -25.52542 -24.63884 -24.25060 -23.45083 -22.94436 -21.19058 -20.20151 -19.90396 -18.99299 -18.45116 -18.18969 -17.64547 -17.23219 -16.52958 -16.32523 -15.98029 -15.67421 -15.40602 -15.25896 -14.96594 -14.77197 -14.44827 -14.27129 -14.11779 -13.79104 -13.62383 -13.49018 -13.41841 -13.16649 -12.94277 -12.59915 -12.52513 -12.48986 -12.43866 -12.28928 -12.17246 -12.01164 -11.95244 -11.86983 -11.50182 -11.48068 -11.21513 -10.70704 -10.62425 -9.75473 -9.53411 -9.48430 -8.70126 -6.46068 -0.30527 0.13553 0.34284 1.28000 1.39142 1.48597 1.58553 1.61909 1.77809 2.19604 2.53989 2.61343 2.68775 3.05916 3.09268 3.13517 3.46436 3.69733 3.82928 3.91120 4.03585 4.08920 4.14502 4.19592 4.22679 4.36590 4.38098 4.42146 4.55706 4.63634 4.67384 4.75597 4.87242 4.92886 4.93431 4.94985 5.00765 5.03618 5.13718 5.31858 5.43907 5.47716 5.58799 5.59434 5.63490 5.81318 5.94699 6.13450 6.43010 6.68801 7.07240 7.28260 7.41212 8.64263 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016686 B = 0.002253 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.605502 B =12424.667110 C =12953.492095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 N -0.596 5.596 4 C 0.248 3.752 5 C -0.614 4.614 6 H 0.048 0.952 7 C -0.035 4.035 8 N -0.932 5.932 9 Si 1.120 2.880 10 H -0.280 1.280 11 H -0.258 1.258 12 H -0.279 1.279 13 C 0.522 3.478 14 O -0.603 6.603 15 C -0.174 4.174 16 H 0.154 0.846 17 C -0.119 4.119 18 C -0.092 4.092 19 H 0.093 0.907 20 C -0.055 4.055 21 C -0.090 4.090 22 C -0.106 4.106 23 C -0.080 4.080 24 C -0.034 4.034 25 C 0.210 3.790 26 N -0.305 5.305 27 N -0.060 5.060 28 N -0.198 5.198 29 H 0.495 0.505 30 N -0.289 5.289 31 C -0.086 4.086 32 H 0.100 0.900 33 H 0.034 0.966 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.016 0.984 38 H -0.013 1.013 39 H 0.253 0.747 40 H 0.087 0.913 41 H 0.155 0.845 42 H 0.159 0.841 43 H 0.170 0.830 44 H 0.149 0.851 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.290 -11.654 -28.245 32.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.021 4.021 3 N -0.326 5.326 4 C 0.126 3.874 5 C -0.652 4.652 6 H 0.066 0.934 7 C -0.232 4.232 8 N -0.569 5.569 9 Si 0.940 3.060 10 H -0.205 1.205 11 H -0.183 1.183 12 H -0.205 1.205 13 C 0.311 3.689 14 O -0.485 6.485 15 C -0.195 4.195 16 H 0.172 0.828 17 C -0.156 4.156 18 C -0.111 4.111 19 H 0.111 0.889 20 C -0.055 4.055 21 C -0.108 4.108 22 C -0.124 4.124 23 C -0.100 4.100 24 C -0.037 4.037 25 C -0.070 4.070 26 N -0.177 5.177 27 N -0.055 5.055 28 N -0.050 5.050 29 H 0.354 0.646 30 N -0.141 5.141 31 C -0.106 4.106 32 H 0.119 0.881 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.089 0.911 37 H 0.034 0.966 38 H 0.005 0.995 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.173 0.827 42 H 0.177 0.823 43 H 0.187 0.813 44 H 0.167 0.833 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.260 -10.090 -27.080 30.666 hybrid contribution -1.608 0.638 -0.853 1.929 sum -11.868 -9.451 -27.932 31.787 Atomic orbital electron populations 1.22178 0.94647 1.03725 1.01436 1.21766 0.95145 0.81016 1.04146 1.48045 1.63768 1.15232 1.05545 1.18826 0.95934 0.91109 0.81551 1.22519 0.97890 1.35303 1.09485 0.93402 1.27440 1.09560 0.92572 0.93673 1.70929 1.07615 1.37953 1.40401 0.82918 0.69321 0.77731 0.76013 1.20544 1.18266 1.20533 1.20483 0.76622 0.85850 0.85896 1.90630 1.48797 1.20938 1.88114 1.22387 1.04887 1.04685 0.87549 0.82816 1.23287 0.92822 1.00394 0.99126 1.20914 1.00768 0.98042 0.91351 0.88903 1.18914 0.96793 0.94320 0.95477 1.21569 0.97862 0.95693 0.95717 1.21449 0.95102 1.00334 0.95503 1.21408 0.98765 0.90248 0.99627 1.17302 0.98413 0.90433 0.97534 1.23936 0.97556 0.92768 0.92721 1.76149 1.15492 1.04900 1.21190 1.78884 1.07345 1.20065 0.99205 1.47808 1.30580 1.02046 1.24531 0.64567 1.74849 1.13372 1.07096 1.18807 1.20934 0.95182 0.99634 0.94847 0.88098 0.94688 0.92298 0.87456 0.91150 0.96565 0.99543 0.93730 0.89489 0.82728 0.82327 0.81297 0.83335 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 10.12 71.98 0.73 -3.35 16 2 C 0.10 3.12 5.76 86.38 0.50 3.62 16 3 N -0.60 -26.19 2.46 -826.15 -2.03 -28.21 16 4 C 0.25 13.80 4.47 85.63 0.38 14.19 16 5 C -0.61 -36.51 9.39 25.60 0.24 -36.27 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 7 C -0.03 -2.07 5.46 84.65 0.46 -1.61 16 8 N -0.93 -59.55 13.65 21.45 0.29 -59.26 16 9 Si 1.12 51.99 29.90 68.60 2.05 54.04 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 C 0.52 22.73 7.46 87.66 0.65 23.38 16 14 O -0.60 -33.16 15.84 -3.04 -0.05 -33.21 16 15 C -0.17 -4.98 4.43 -11.53 -0.05 -5.03 16 16 H 0.15 3.34 6.48 -2.39 -0.02 3.32 16 17 C -0.12 -2.68 9.56 30.60 0.29 -2.38 16 18 C -0.09 -2.47 5.55 -11.54 -0.06 -2.54 16 19 H 0.09 3.17 7.67 -2.39 -0.02 3.15 16 20 C -0.05 -1.18 5.61 -19.90 -0.11 -1.29 16 21 C -0.09 -1.23 9.29 22.31 0.21 -1.02 16 22 C -0.11 -1.15 10.03 22.24 0.22 -0.92 16 23 C -0.08 -1.17 9.70 22.48 0.22 -0.95 16 24 C -0.03 -0.71 5.88 -20.04 -0.12 -0.83 16 25 C 0.21 4.76 7.94 137.38 1.09 5.86 16 26 N -0.31 -8.07 12.23 -52.18 -0.64 -8.71 16 27 N -0.06 -1.25 13.47 37.02 0.50 -0.75 16 28 N -0.20 -2.58 7.90 37.02 0.29 -2.29 16 29 H 0.50 1.05 8.96 -347.53 -3.12 -2.07 16 30 N -0.29 -4.98 12.08 -52.13 -0.63 -5.61 16 31 C -0.09 -2.09 9.39 22.48 0.21 -1.88 16 32 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.06 1.41 7.46 -2.38 -0.02 1.40 16 35 H 0.11 2.49 6.64 -2.38 -0.02 2.47 16 36 H 0.07 2.32 8.07 -2.38 -0.02 2.30 16 37 H 0.02 0.91 7.94 -2.39 -0.02 0.89 16 38 H -0.01 -0.86 7.29 -2.39 -0.02 -0.88 16 39 H 0.25 16.47 7.22 -92.70 -0.67 15.80 16 40 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.16 1.90 6.17 -2.39 -0.01 1.89 16 42 H 0.16 1.25 6.01 -2.91 -0.02 1.23 16 43 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 44 H 0.15 1.61 7.88 -2.91 -0.02 1.58 16 45 H 0.11 3.22 7.89 -2.91 -0.02 3.20 16 Total: -1.00 -88.95 384.86 2.68 -86.26 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -1.97 Total: 8.76 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 4.86 Total: -11.03 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -2.21 Total: -104.83 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.05 Total: -33.21 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.05 Total: 54.04 kcal Total: -88.95 2.68 -86.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609223877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.826 kcal (2) G-P(sol) polarization free energy of solvation -88.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds