Wall clock time and date at job start Wed Apr 1 2020 01:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45204 * 109.46812 * 2 1 4 4 C 1.34230 * 116.99789 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00205 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99669 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.47037 * 300.00250 * 6 4 3 8 8 C 1.52993 * 109.47188 * 299.99766 * 7 6 4 9 9 C 1.52996 * 109.47740 * 300.00126 * 8 7 6 10 10 C 1.52997 * 109.47569 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.47002 * 65.00197 * 10 9 8 12 12 O 1.21301 * 119.99494 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00204 * 179.97438 * 11 10 9 14 14 C 1.37095 * 119.99783 * 179.97438 * 13 11 10 15 15 H 1.08003 * 120.00428 * 16.51621 * 14 13 11 16 16 C 1.38953 * 119.99726 * 196.51494 * 14 13 11 17 17 N 1.31414 * 120.00029 * 21.64860 * 16 14 13 18 18 Si 1.86803 * 120.00057 * 201.64034 * 16 14 13 19 19 H 1.48509 * 109.46897 * 60.00237 * 18 16 14 20 20 H 1.48497 * 109.47199 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47286 * 300.00438 * 18 16 14 22 22 C 1.46499 * 119.99711 * 0.02562 * 13 11 10 23 23 C 1.50699 * 109.47064 * 84.06793 * 22 13 11 24 24 O 1.20829 * 120.00234 * 359.97438 * 23 22 13 25 25 O 1.34235 * 119.99686 * 180.02562 * 23 22 13 26 26 C 1.53004 * 109.46729 * 60.00030 * 9 8 7 27 27 C 1.52996 * 109.47118 * 299.99896 * 26 9 8 28 28 H 1.09000 * 109.47109 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47212 * 299.99319 * 1 2 3 30 30 H 1.08997 * 109.47470 * 60.00008 * 1 2 3 31 31 H 1.09000 * 109.47212 * 240.00681 * 2 1 3 32 32 H 1.08997 * 109.47470 * 119.99991 * 2 1 3 33 33 H 1.08994 * 109.47036 * 60.00631 * 6 4 3 34 34 H 1.08999 * 109.47079 * 60.00428 * 7 6 4 35 35 H 1.09000 * 109.46713 * 180.02562 * 7 6 4 36 36 H 1.09007 * 109.47165 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.47235 * 60.00813 * 8 7 6 38 38 H 1.08999 * 109.47318 * 300.00636 * 9 8 7 39 39 H 1.09002 * 109.47667 * 185.00097 * 10 9 8 40 40 H 1.08996 * 109.47572 * 305.00355 * 10 9 8 41 41 H 0.96998 * 119.99820 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.46607 * 204.06033 * 22 13 11 43 43 H 1.08989 * 109.47153 * 324.06001 * 22 13 11 44 44 H 0.96699 * 116.99709 * 180.02562 * 25 23 22 45 45 H 1.09002 * 109.46709 * 180.02562 * 26 9 8 46 46 H 1.09000 * 109.47467 * 60.00191 * 26 9 8 47 47 H 1.08999 * 109.47706 * 300.00356 * 27 26 9 48 48 H 1.09000 * 109.47526 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9205 2.9376 0.0012 7 6 3.4493 3.6849 -1.2480 8 6 3.9213 2.9384 -2.4973 9 6 5.4492 2.8584 -2.4969 10 6 5.9212 2.1114 -3.7459 11 6 5.5641 2.9094 -4.9735 12 8 4.9891 3.9714 -4.8603 13 7 5.8845 2.4435 -6.1969 14 6 5.5592 3.1693 -7.3136 15 1 5.2960 4.2127 -7.2218 16 6 5.5681 2.5623 -8.5635 17 7 5.4628 1.2560 -8.6604 18 14 5.7296 3.6034 -10.1061 19 1 7.0091 4.3560 -10.0637 20 1 5.7135 2.7226 -11.3016 21 1 4.5954 4.5590 -10.1794 22 6 6.5795 1.1611 -6.3334 23 6 5.5736 0.0393 -6.3063 24 8 4.3969 0.2856 -6.1848 25 8 5.9850 -1.2338 -6.4160 26 6 5.9204 2.1110 -1.2478 27 6 5.4485 2.8576 0.0015 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.5843 3.4694 0.8912 34 1 2.3608 3.7419 -1.2483 35 1 3.8662 4.6920 -1.2478 36 1 3.5852 3.4706 -3.3873 37 1 3.5047 1.9312 -2.4978 38 1 5.8658 3.8656 -2.4964 39 1 7.0019 1.9764 -3.7020 40 1 5.4350 1.1369 -3.7920 41 1 5.4694 0.8324 -9.5330 42 1 7.1213 1.1404 -7.2790 43 1 7.2822 1.0391 -5.5093 44 1 5.3030 -1.9189 -6.3937 45 1 7.0089 2.0544 -1.2473 46 1 5.5038 1.1038 -1.2482 47 1 5.8650 3.8648 0.0021 48 1 5.7845 2.3254 0.8915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610012495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:22 Heat of formation + Delta-G solvation = -223.121909 kcal Electronic energy + Delta-G solvation = -31911.938685 eV Core-core repulsion = 27545.749378 eV Total energy + Delta-G solvation = -4366.189307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.92915 -39.51143 -38.58643 -37.64146 -36.30170 -35.21694 -34.48421 -32.71905 -31.81108 -31.53937 -30.48843 -27.85441 -27.33810 -24.81273 -23.87050 -22.47965 -22.40418 -21.16326 -20.71946 -19.55315 -18.63775 -17.39878 -17.16221 -16.87392 -16.72273 -16.28904 -15.81300 -15.61147 -15.27098 -14.63672 -14.44708 -14.35859 -14.21800 -13.84463 -13.78463 -13.55054 -13.33158 -12.92387 -12.55039 -12.30607 -12.15702 -12.05209 -11.95905 -11.82627 -11.71188 -11.63193 -11.57905 -11.38912 -11.11306 -10.94557 -10.81311 -10.57094 -10.49299 -10.44819 -10.34030 -10.29840 -9.99261 -9.80854 -9.72079 -9.58688 -9.01934 -8.35952 -7.88727 -6.43531 -3.87230 2.26487 2.67333 3.16994 3.24073 3.27898 3.46685 3.67339 4.09458 4.26198 4.53618 4.66554 4.77388 4.81853 4.83481 4.87268 5.06356 5.11706 5.13002 5.31111 5.36124 5.47831 5.53375 5.61468 5.62791 5.67147 5.75120 5.77913 5.81327 5.92053 5.98127 6.08906 6.11962 6.18309 6.26093 6.36066 6.40609 6.47720 6.54460 6.56132 6.59688 6.91933 6.95884 7.49637 7.55929 7.81845 8.01693 8.39064 9.03747 9.11556 9.33714 9.88541 10.65442 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014057 B = 0.003314 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.442820 B = 8447.981580 C = 8993.462737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.358 6.358 4 C 0.470 3.530 5 O -0.504 6.504 6 C -0.080 4.080 7 C -0.107 4.107 8 C -0.121 4.121 9 C -0.064 4.064 10 C -0.131 4.131 11 C 0.464 3.536 12 O -0.572 6.572 13 N -0.435 5.435 14 C -0.305 4.305 15 H 0.107 0.893 16 C 0.029 3.971 17 N -0.883 5.883 18 Si 0.928 3.072 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.146 3.854 23 C 0.489 3.511 24 O -0.503 6.503 25 O -0.535 6.535 26 C -0.131 4.131 27 C -0.099 4.099 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.270 0.730 42 H 0.127 0.873 43 H 0.077 0.923 44 H 0.391 0.609 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.225 -3.008 15.679 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.275 6.275 4 C 0.313 3.687 5 O -0.392 6.392 6 C -0.099 4.099 7 C -0.145 4.145 8 C -0.158 4.158 9 C -0.083 4.083 10 C -0.172 4.172 11 C 0.253 3.747 12 O -0.456 6.456 13 N -0.155 5.155 14 C -0.433 4.433 15 H 0.125 0.875 16 C -0.174 4.174 17 N -0.523 5.523 18 Si 0.755 3.245 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.199 1.199 22 C 0.020 3.980 23 C 0.329 3.671 24 O -0.389 6.389 25 O -0.346 6.346 26 C -0.168 4.168 27 C -0.137 4.137 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.145 0.855 43 H 0.095 0.905 44 H 0.248 0.752 45 H 0.080 0.920 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.363 -2.534 15.582 15.845 hybrid contribution -0.502 -0.639 -1.031 1.313 sum -1.865 -3.173 14.551 15.010 Atomic orbital electron populations 1.21798 0.92738 1.02867 1.03528 1.22995 0.95341 0.80507 1.02481 1.86512 1.24903 1.32109 1.84001 1.23813 0.80319 0.92891 0.71643 1.90587 1.60046 1.43345 1.45214 1.21202 0.97051 0.89791 1.01864 1.21555 1.01187 0.99369 0.92379 1.21737 0.95449 0.99906 0.98751 1.20831 0.95810 0.99365 0.92298 1.21663 1.01375 0.99862 0.94281 1.20089 0.82510 0.87923 0.84147 1.90471 1.44696 1.24392 1.86020 1.43468 1.50386 1.16021 1.05583 1.19664 1.45542 0.95026 0.83019 0.87523 1.25213 0.96857 0.95833 0.99472 1.69801 1.47784 1.09193 1.25551 0.85961 0.79138 0.79379 0.80038 1.19881 1.21077 1.19865 1.20657 0.91616 0.81366 1.04409 1.23876 0.90343 0.82151 0.70727 1.90611 1.19343 1.83710 1.45187 1.84528 1.45263 1.18093 1.86729 1.21892 1.00565 1.01031 0.93323 1.21404 0.91611 1.01415 0.99245 0.90369 0.91646 0.91273 0.91155 0.91499 0.87932 0.91024 0.90223 0.88519 0.93563 0.90519 0.90514 0.90748 0.91921 0.85509 0.90516 0.75241 0.92032 0.89745 0.90538 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 37.15 0.38 -0.90 16 2 C 0.06 0.67 6.19 37.15 0.23 0.90 16 3 O -0.36 -4.71 10.12 -39.26 -0.40 -5.11 16 4 C 0.47 6.54 5.74 36.01 0.21 6.74 16 5 O -0.50 -8.03 13.41 -18.75 -0.25 -8.29 16 6 C -0.08 -0.94 3.11 -91.77 -0.29 -1.23 16 7 C -0.11 -1.42 5.39 -26.73 -0.14 -1.57 16 8 C -0.12 -2.09 4.72 -26.74 -0.13 -2.22 16 9 C -0.06 -1.07 1.84 -90.62 -0.17 -1.23 16 10 C -0.13 -2.48 3.78 -27.88 -0.11 -2.58 16 11 C 0.46 11.09 7.13 -10.98 -0.08 11.01 16 12 O -0.57 -15.09 13.61 5.54 0.08 -15.02 16 13 N -0.43 -10.91 2.18 -116.10 -0.25 -11.16 16 14 C -0.31 -8.37 9.34 -14.93 -0.14 -8.51 16 15 H 0.11 3.05 7.37 -52.48 -0.39 2.67 16 16 C 0.03 0.74 4.87 -17.47 -0.09 0.66 16 17 N -0.88 -23.30 9.28 55.50 0.51 -22.78 16 18 Si 0.93 20.54 29.60 -169.99 -5.03 15.51 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.15 3.20 4.97 -5.19 -0.03 3.17 16 23 C 0.49 10.97 5.86 36.01 0.21 11.19 16 24 O -0.50 -13.23 16.79 -18.75 -0.31 -13.55 16 25 O -0.54 -9.81 13.42 -39.27 -0.53 -10.34 16 26 C -0.13 -1.83 4.91 -26.73 -0.13 -1.97 16 27 C -0.10 -1.15 5.09 -26.73 -0.14 -1.29 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.85 8.13 -51.93 -0.42 0.42 16 32 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.10 2.02 5.96 -51.92 -0.31 1.71 16 37 H 0.05 0.85 7.22 -51.93 -0.37 0.47 16 38 H 0.08 1.30 7.96 -51.93 -0.41 0.89 16 39 H 0.08 1.25 7.42 -51.93 -0.39 0.87 16 40 H 0.07 1.46 7.52 -51.93 -0.39 1.07 16 41 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.13 2.88 6.37 -51.93 -0.33 2.55 16 43 H 0.08 1.37 6.69 -51.94 -0.35 1.02 16 44 H 0.39 5.58 9.10 45.56 0.41 5.99 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 1.35 5.52 -51.93 -0.29 1.06 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -34.02 381.87 -7.41 -41.43 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -6.59 Total: 11.38 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -0.39 Total: 12.18 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.26 Total: -33.95 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -1.42 Total: -52.30 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.02 -7.41 -41.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610012495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.691 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds