Wall clock time and date at job start Wed Apr 1 2020 01:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45204 * 109.46812 * 2 1 4 4 C 1.34230 * 116.99789 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00205 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99669 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.47037 * 300.00250 * 6 4 3 8 8 C 1.52993 * 109.47188 * 299.99766 * 7 6 4 9 9 C 1.52996 * 109.47740 * 300.00126 * 8 7 6 10 10 C 1.52997 * 109.47569 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.47002 * 65.00197 * 10 9 8 12 12 O 1.21301 * 119.99494 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00204 * 179.97438 * 11 10 9 14 14 C 1.37095 * 119.99783 * 179.97438 * 13 11 10 15 15 H 1.08003 * 120.00428 * 16.51621 * 14 13 11 16 16 C 1.38953 * 119.99726 * 196.51494 * 14 13 11 17 17 N 1.31414 * 120.00029 * 21.64860 * 16 14 13 18 18 Si 1.86803 * 120.00057 * 201.64034 * 16 14 13 19 19 H 1.48509 * 109.46897 * 60.00237 * 18 16 14 20 20 H 1.48497 * 109.47199 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47286 * 300.00438 * 18 16 14 22 22 C 1.46499 * 119.99711 * 0.02562 * 13 11 10 23 23 C 1.50699 * 109.47064 * 84.06793 * 22 13 11 24 24 O 1.20829 * 120.00234 * 359.97438 * 23 22 13 25 25 O 1.34235 * 119.99686 * 180.02562 * 23 22 13 26 26 C 1.53004 * 109.46729 * 60.00030 * 9 8 7 27 27 C 1.52996 * 109.47118 * 299.99896 * 26 9 8 28 28 H 1.09000 * 109.47109 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47212 * 299.99319 * 1 2 3 30 30 H 1.08997 * 109.47470 * 60.00008 * 1 2 3 31 31 H 1.09000 * 109.47212 * 240.00681 * 2 1 3 32 32 H 1.08997 * 109.47470 * 119.99991 * 2 1 3 33 33 H 1.08994 * 109.47036 * 60.00631 * 6 4 3 34 34 H 1.08999 * 109.47079 * 60.00428 * 7 6 4 35 35 H 1.09000 * 109.46713 * 180.02562 * 7 6 4 36 36 H 1.09007 * 109.47165 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.47235 * 60.00813 * 8 7 6 38 38 H 1.08999 * 109.47318 * 300.00636 * 9 8 7 39 39 H 1.09002 * 109.47667 * 185.00097 * 10 9 8 40 40 H 1.08996 * 109.47572 * 305.00355 * 10 9 8 41 41 H 0.96998 * 119.99820 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.46607 * 204.06033 * 22 13 11 43 43 H 1.08989 * 109.47153 * 324.06001 * 22 13 11 44 44 H 0.96699 * 116.99709 * 180.02562 * 25 23 22 45 45 H 1.09002 * 109.46709 * 180.02562 * 26 9 8 46 46 H 1.09000 * 109.47467 * 60.00191 * 26 9 8 47 47 H 1.08999 * 109.47706 * 300.00356 * 27 26 9 48 48 H 1.09000 * 109.47526 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9205 2.9376 0.0012 7 6 3.4493 3.6849 -1.2480 8 6 3.9213 2.9384 -2.4973 9 6 5.4492 2.8584 -2.4969 10 6 5.9212 2.1114 -3.7459 11 6 5.5641 2.9094 -4.9735 12 8 4.9891 3.9714 -4.8603 13 7 5.8845 2.4435 -6.1969 14 6 5.5592 3.1693 -7.3136 15 1 5.2960 4.2127 -7.2218 16 6 5.5681 2.5623 -8.5635 17 7 5.4628 1.2560 -8.6604 18 14 5.7296 3.6034 -10.1061 19 1 7.0091 4.3560 -10.0637 20 1 5.7135 2.7226 -11.3016 21 1 4.5954 4.5590 -10.1794 22 6 6.5795 1.1611 -6.3334 23 6 5.5736 0.0393 -6.3063 24 8 4.3969 0.2856 -6.1848 25 8 5.9850 -1.2338 -6.4160 26 6 5.9204 2.1110 -1.2478 27 6 5.4485 2.8576 0.0015 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.5843 3.4694 0.8912 34 1 2.3608 3.7419 -1.2483 35 1 3.8662 4.6920 -1.2478 36 1 3.5852 3.4706 -3.3873 37 1 3.5047 1.9312 -2.4978 38 1 5.8658 3.8656 -2.4964 39 1 7.0019 1.9764 -3.7020 40 1 5.4350 1.1369 -3.7920 41 1 5.4694 0.8324 -9.5330 42 1 7.1213 1.1404 -7.2790 43 1 7.2822 1.0391 -5.5093 44 1 5.3030 -1.9189 -6.3937 45 1 7.0089 2.0544 -1.2473 46 1 5.5038 1.1038 -1.2482 47 1 5.8650 3.8648 0.0021 48 1 5.7845 2.3254 0.8915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610012495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:21 Heat of formation + Delta-G solvation = -244.060837 kcal Electronic energy + Delta-G solvation = -31912.846665 eV Core-core repulsion = 27545.749378 eV Total energy + Delta-G solvation = -4367.097287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.01629 -41.26007 -40.17929 -38.97959 -37.46470 -36.94844 -36.34387 -34.10495 -33.55841 -32.52641 -31.59811 -29.61085 -28.87075 -26.49950 -25.03388 -23.62532 -23.41850 -22.85491 -22.03166 -20.64925 -20.37774 -19.02262 -18.69722 -18.45177 -18.01276 -17.73153 -17.45055 -16.93360 -16.43923 -16.31773 -16.22444 -15.96225 -15.68424 -15.11965 -14.95050 -14.84435 -14.53840 -14.16922 -13.90550 -13.66405 -13.58753 -13.37979 -13.30975 -13.13275 -13.00369 -12.85060 -12.80439 -12.65833 -12.57856 -12.51029 -12.33795 -12.14904 -12.13923 -11.95410 -11.73373 -11.55522 -11.51673 -11.18691 -10.99248 -10.94833 -10.86123 -10.21595 -9.84472 -8.42672 -5.93829 1.21328 1.38109 1.42106 1.52825 1.68751 1.74948 1.89102 2.27082 2.53222 2.96193 3.12344 3.56482 3.72300 3.73924 3.87641 3.96430 3.97593 4.05476 4.17737 4.25139 4.28703 4.32888 4.43770 4.47821 4.53838 4.60221 4.70430 4.73928 4.78433 4.82701 4.88384 4.90660 4.98573 5.07178 5.12954 5.15383 5.17864 5.27408 5.33268 5.42938 5.45559 5.55217 5.72264 5.91696 6.03893 6.41084 6.77944 7.12982 7.30855 7.45134 7.97380 8.64047 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014057 B = 0.003314 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.442820 B = 8447.981580 C = 8993.462737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.464 3.536 5 O -0.529 6.529 6 C -0.076 4.076 7 C -0.100 4.100 8 C -0.117 4.117 9 C -0.060 4.060 10 C -0.122 4.122 11 C 0.453 3.547 12 O -0.607 6.607 13 N -0.449 5.449 14 C -0.341 4.341 15 H 0.080 0.920 16 C -0.002 4.002 17 N -0.896 5.896 18 Si 0.991 3.009 19 H -0.261 1.261 20 H -0.275 1.275 21 H -0.282 1.282 22 C 0.144 3.856 23 C 0.495 3.505 24 O -0.550 6.550 25 O -0.519 6.519 26 C -0.124 4.124 27 C -0.097 4.097 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.141 0.859 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.024 0.976 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.273 0.727 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.412 0.588 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.099 0.901 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.141 -3.202 17.175 17.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.309 3.691 5 O -0.419 6.419 6 C -0.094 4.094 7 C -0.138 4.138 8 C -0.155 4.155 9 C -0.079 4.079 10 C -0.162 4.162 11 C 0.244 3.756 12 O -0.493 6.493 13 N -0.169 5.169 14 C -0.469 4.469 15 H 0.098 0.902 16 C -0.203 4.203 17 N -0.535 5.535 18 Si 0.815 3.185 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.208 1.208 22 C 0.018 3.982 23 C 0.338 3.662 24 O -0.439 6.439 25 O -0.331 6.331 26 C -0.161 4.161 27 C -0.134 4.134 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.159 0.841 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.094 0.906 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.271 0.729 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.118 0.882 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.260 -2.778 17.083 17.310 hybrid contribution -0.889 -0.685 -1.532 1.899 sum -1.149 -3.463 15.552 15.974 Atomic orbital electron populations 1.21812 0.90623 1.04274 1.03597 1.23207 0.97062 0.79712 1.02072 1.86516 1.24753 1.33204 1.83710 1.24335 0.80371 0.93569 0.70871 1.90573 1.60532 1.44329 1.46441 1.21309 0.97302 0.88555 1.02255 1.21481 1.01467 0.99671 0.91139 1.21608 0.96282 0.98492 0.99093 1.20836 0.95047 0.99370 0.92610 1.21670 1.03216 0.98550 0.92807 1.20991 0.81576 0.87804 0.85244 1.90438 1.46016 1.26099 1.86729 1.43650 1.50759 1.17057 1.05439 1.19607 1.47815 0.94606 0.84823 0.90171 1.25953 0.95768 0.97004 1.01591 1.69889 1.47308 1.10140 1.26212 0.85031 0.79065 0.77815 0.76599 1.18588 1.19964 1.20785 1.20817 0.91710 0.80012 1.05691 1.23936 0.89582 0.83277 0.69431 1.90601 1.21192 1.84631 1.47501 1.84455 1.45691 1.17185 1.85793 1.21812 1.01565 0.99765 0.92992 1.21452 0.91257 1.02503 0.98218 0.88318 0.90466 0.92227 0.92931 0.90560 0.84146 0.90771 0.88683 0.92984 0.95746 0.90612 0.87361 0.91756 0.91698 0.86307 0.86301 0.72865 0.90190 0.91762 0.88228 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 10.29 71.98 0.74 -1.59 16 2 C 0.05 1.17 6.19 71.98 0.45 1.61 16 3 O -0.36 -9.42 10.12 -51.41 -0.52 -9.94 16 4 C 0.46 12.46 5.74 71.24 0.41 12.87 16 5 O -0.53 -16.58 13.41 21.97 0.29 -16.29 16 6 C -0.08 -1.60 3.11 -11.54 -0.04 -1.64 16 7 C -0.10 -2.56 5.39 30.59 0.16 -2.40 16 8 C -0.12 -4.18 4.72 30.59 0.14 -4.03 16 9 C -0.06 -1.96 1.84 -10.79 -0.02 -1.98 16 10 C -0.12 -4.61 3.78 29.85 0.11 -4.50 16 11 C 0.45 22.32 7.13 87.66 0.63 22.94 16 12 O -0.61 -33.60 13.61 -3.09 -0.04 -33.64 16 13 N -0.45 -23.11 2.18 -639.60 -1.39 -24.51 16 14 C -0.34 -19.34 9.34 84.04 0.79 -18.55 16 15 H 0.08 4.85 7.37 -2.91 -0.02 4.83 16 16 C 0.00 -0.11 4.87 84.93 0.41 0.30 16 17 N -0.90 -47.46 9.28 21.66 0.20 -47.26 16 18 Si 0.99 42.44 29.60 68.60 2.03 44.47 16 19 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 C 0.14 6.24 4.97 85.63 0.43 6.66 16 23 C 0.50 22.19 5.86 71.24 0.42 22.61 16 24 O -0.55 -29.60 16.79 21.95 0.37 -29.24 16 25 O -0.52 -18.30 13.42 -51.47 -0.69 -18.99 16 26 C -0.12 -3.24 4.91 30.59 0.15 -3.09 16 27 C -0.10 -1.95 5.09 30.59 0.16 -1.80 16 28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 32 H 0.08 1.51 8.13 -2.39 -0.02 1.49 16 33 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 1.85 8.11 -2.39 -0.02 1.83 16 35 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.05 2.31 5.96 -2.38 -0.01 2.30 16 37 H 0.02 0.94 7.22 -2.39 -0.02 0.92 16 38 H 0.08 2.51 7.96 -2.39 -0.02 2.49 16 39 H 0.11 3.33 7.42 -2.39 -0.02 3.31 16 40 H 0.06 2.57 7.52 -2.39 -0.02 2.55 16 41 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 42 H 0.12 5.36 6.37 -2.39 -0.02 5.35 16 43 H 0.12 4.04 6.69 -2.39 -0.02 4.02 16 44 H 0.41 11.10 9.10 -74.06 -0.67 10.43 16 45 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.06 1.99 5.52 -2.39 -0.01 1.98 16 47 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 Total: -1.00 -77.69 381.87 5.49 -72.19 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: 0.31 Total: 35.75 kcal Atomic # 6 Polarization: 22.49 SS G_CDS: 4.93 Total: 27.43 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: -1.19 Total: -71.76 kcal Atomic # 8 Polarization: -107.50 SS G_CDS: -0.59 Total: -108.09 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -77.69 5.49 -72.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610012495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.866 kcal (2) G-P(sol) polarization free energy of solvation -77.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds