Wall clock time and date at job start Wed Apr 1 2020 01:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45199 * 109.46684 * 2 1 4 4 C 1.34234 * 116.99774 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99855 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99964 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.58623 * 358.39306 * 6 4 3 8 8 C 1.53188 * 109.70180 * 238.03834 * 6 4 3 9 9 C 1.53046 * 109.31489 * 185.50699 * 8 6 4 10 10 C 1.53040 * 109.53789 * 61.36417 * 9 8 6 11 11 C 1.53630 * 109.24056 * 298.51571 * 10 9 8 12 12 N 1.46922 * 108.54484 * 54.85677 * 11 10 9 13 13 C 1.34773 * 120.63223 * 126.36876 * 12 11 10 14 14 O 1.21281 * 119.99755 * 173.68032 * 13 12 11 15 15 C 1.50693 * 120.00186 * 353.95169 * 13 12 11 16 16 O 1.45203 * 109.47469 * 179.97438 * 15 13 12 17 17 C 1.34231 * 116.99876 * 179.97438 * 16 15 13 18 18 O 1.20824 * 120.00151 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99463 * 180.02562 * 17 16 15 20 20 H 1.08993 * 109.47526 * 300.00202 * 19 17 16 21 21 C 1.53006 * 109.46993 * 60.00828 * 19 17 16 22 22 C 1.50706 * 109.46705 * 180.02562 * 19 17 16 23 23 H 1.07993 * 120.00324 * 0.02562 * 22 19 17 24 24 C 1.37878 * 119.99580 * 180.02562 * 22 19 17 25 25 N 1.31521 * 119.99618 * 180.02562 * 24 22 19 26 26 Si 1.86802 * 120.00346 * 0.02562 * 24 22 19 27 27 H 1.48501 * 109.47043 * 89.99954 * 26 24 22 28 28 H 1.48504 * 109.47044 * 210.00096 * 26 24 22 29 29 H 1.48502 * 109.46792 * 329.99912 * 26 24 22 30 30 H 1.09000 * 109.47418 * 299.98994 * 1 2 3 31 31 H 1.08999 * 109.47436 * 60.00063 * 1 2 3 32 32 H 1.09004 * 109.46779 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46935 * 240.00791 * 2 1 3 34 34 H 1.08992 * 109.47152 * 120.00551 * 2 1 3 35 35 H 1.09000 * 109.50141 * 305.45817 * 8 6 4 36 36 H 1.09006 * 109.50140 * 65.55526 * 8 6 4 37 37 H 1.08998 * 109.46332 * 181.38567 * 9 8 6 38 38 H 1.09005 * 109.45891 * 301.34468 * 9 8 6 39 39 H 1.08998 * 109.49598 * 58.58846 * 10 9 8 40 40 H 1.08992 * 109.49981 * 178.65185 * 10 9 8 41 41 H 1.08999 * 109.73911 * 295.11378 * 11 10 9 42 42 H 1.08995 * 109.66058 * 174.54879 * 11 10 9 43 43 H 1.08998 * 109.47394 * 300.00770 * 15 13 12 44 44 H 1.09004 * 109.46922 * 59.99849 * 15 13 12 45 45 H 1.09005 * 109.46521 * 299.99144 * 21 19 17 46 46 H 1.08993 * 109.47496 * 59.99356 * 21 19 17 47 47 H 1.08998 * 109.46907 * 179.97438 * 21 19 17 48 48 H 0.96996 * 119.99472 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.1116 3.6675 -0.0280 8 6 4.8228 3.1237 -1.2239 9 6 5.5101 4.4888 -1.1432 10 6 6.3818 4.5494 0.1132 11 6 5.4927 4.3818 1.3549 12 7 4.7233 3.1381 1.2142 13 6 4.7489 2.2015 2.1830 14 8 4.0226 1.2330 2.1094 15 6 5.6754 2.3607 3.3607 16 8 5.5166 1.2301 4.2579 17 6 6.2766 1.2187 5.3642 18 8 7.0486 2.1236 5.5763 19 6 6.1669 0.0771 6.3419 20 1 5.1470 0.0213 6.7224 21 6 6.5208 -1.2339 5.6369 22 6 7.1185 0.3043 7.4882 23 1 7.7401 1.1872 7.5071 24 6 7.1953 -0.6151 8.5128 25 7 8.0254 -0.4165 9.5135 26 14 6.1206 -2.1426 8.4798 27 1 6.8373 -3.2370 7.7771 28 1 5.8159 -2.5636 9.8710 29 1 4.8541 -1.8413 7.7652 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 5.5773 2.3372 -1.2428 36 1 4.2206 3.0726 -2.1311 37 1 6.1338 4.6341 -2.0252 38 1 4.7548 5.2735 -1.0994 39 1 7.1215 3.7495 0.0818 40 1 6.8896 5.5128 0.1576 41 1 4.8093 5.2272 1.4352 42 1 6.1158 4.3270 2.2474 43 1 6.7061 2.4039 3.0089 44 1 5.4338 3.2818 3.8912 45 1 5.8321 -1.3980 4.8080 46 1 7.5406 -1.1781 5.2564 47 1 6.4418 -2.0595 6.3441 48 1 8.0792 -1.0631 10.2345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647271019.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:03 Heat of formation + Delta-G solvation = -195.203165 kcal Electronic energy + Delta-G solvation = -31213.143999 eV Core-core repulsion = 26848.165339 eV Total energy + Delta-G solvation = -4364.978660 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41654 -39.95416 -39.29591 -37.72584 -36.46467 -35.77717 -33.99634 -33.43740 -32.41828 -31.51665 -31.33814 -28.81060 -26.20921 -25.17077 -24.65938 -23.57176 -23.01160 -21.49700 -21.29211 -19.88157 -19.33891 -18.09403 -17.29949 -17.08998 -16.77053 -16.52406 -16.22874 -16.13763 -15.79925 -15.42187 -15.14200 -14.73897 -14.47587 -14.33948 -14.04931 -13.89719 -13.53444 -13.42371 -13.22990 -13.01394 -12.81457 -12.53040 -12.36859 -12.21744 -12.04687 -11.90765 -11.66806 -11.64104 -11.55075 -11.34284 -11.19205 -11.04714 -10.68737 -10.54697 -10.40494 -10.33080 -10.28329 -9.78191 -9.67348 -9.31959 -9.16993 -9.09809 -8.63998 -6.12645 -4.15509 1.87512 2.32498 2.52752 2.61768 3.06617 3.24975 3.34979 3.36643 3.43126 4.13286 4.26182 4.34282 4.36868 4.43778 4.48801 4.63504 4.70940 4.82019 4.89567 4.92173 5.02947 5.10321 5.13448 5.17898 5.18484 5.24178 5.30085 5.40759 5.50182 5.55934 5.59369 5.66285 5.69709 5.78928 5.84493 5.97980 6.18843 6.35003 6.42391 6.49600 6.72272 6.85838 6.99300 7.11332 7.46468 7.75543 7.94066 8.37914 8.63086 9.01385 9.44353 10.99473 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012827 B = 0.003074 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.360840 B = 9106.632259 C =10879.485706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.068 3.932 3 O -0.360 6.360 4 C 0.476 3.524 5 O -0.489 6.489 6 C 0.160 3.840 7 H 0.103 0.897 8 C -0.125 4.125 9 C -0.116 4.116 10 C -0.140 4.140 11 C 0.106 3.894 12 N -0.608 5.608 13 C 0.516 3.484 14 O -0.487 6.487 15 C 0.052 3.948 16 O -0.343 6.343 17 C 0.476 3.524 18 O -0.502 6.502 19 C 0.028 3.972 20 H 0.066 0.934 21 C -0.147 4.147 22 C -0.519 4.519 23 H 0.095 0.905 24 C 0.076 3.924 25 N -0.891 5.891 26 Si 0.882 3.118 27 H -0.275 1.275 28 H -0.293 1.293 29 H -0.264 1.264 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.047 0.953 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.174 10.337 -25.016 29.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.006 4.006 3 O -0.278 6.278 4 C 0.318 3.682 5 O -0.375 6.375 6 C 0.055 3.945 7 H 0.121 0.879 8 C -0.164 4.164 9 C -0.154 4.154 10 C -0.178 4.178 11 C -0.016 4.016 12 N -0.348 5.348 13 C 0.304 3.696 14 O -0.360 6.360 15 C -0.025 4.025 16 O -0.260 6.260 17 C 0.319 3.681 18 O -0.387 6.387 19 C 0.008 3.992 20 H 0.083 0.917 21 C -0.204 4.204 22 C -0.556 4.556 23 H 0.113 0.887 24 C -0.126 4.126 25 N -0.528 5.528 26 Si 0.711 3.289 27 H -0.202 1.202 28 H -0.221 1.221 29 H -0.189 1.189 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.061 9.677 -24.797 28.825 hybrid contribution -0.305 -0.801 0.099 0.863 sum -11.367 8.876 -24.698 28.600 Atomic orbital electron populations 1.21799 0.92890 1.02869 1.03227 1.22954 0.94830 0.80031 1.02779 1.86379 1.24211 1.32681 1.84511 1.22601 0.81179 0.91511 0.72894 1.90681 1.60124 1.42459 1.44226 1.20664 0.94158 0.93002 0.86637 0.87900 1.21918 0.99396 0.99560 0.95484 1.21504 0.99267 0.96140 0.98451 1.22058 0.98292 1.03390 0.94090 1.22023 0.94530 0.85308 0.99728 1.47980 1.49210 1.20109 1.17543 1.20421 0.83710 0.82097 0.83339 1.90749 1.40291 1.29651 1.75341 1.22437 0.99475 0.91002 0.89611 1.86696 1.62371 1.43959 1.33006 1.24717 0.76033 0.88350 0.78980 1.90543 1.36247 1.37567 1.74371 1.19159 1.00977 0.87686 0.91337 0.91660 1.22098 1.01452 0.97448 0.99411 1.20900 1.22316 1.10112 1.02305 0.88698 1.24895 0.95010 0.97763 0.94955 1.69865 1.36312 1.36356 1.10307 0.86935 0.81743 0.83740 0.76437 1.20171 1.22051 1.18854 0.91466 0.91806 0.90310 0.91697 0.90655 0.89895 0.89901 0.90663 0.91154 0.90798 0.89846 0.90173 0.88702 0.88389 0.88441 0.93398 0.92366 0.92943 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.86 16 2 C 0.07 0.79 6.19 37.16 0.23 1.02 16 3 O -0.36 -4.74 10.22 -41.21 -0.42 -5.16 16 4 C 0.48 6.67 4.52 36.00 0.16 6.83 16 5 O -0.49 -8.56 14.34 -26.92 -0.39 -8.95 16 6 C 0.16 1.60 3.33 -68.75 -0.23 1.37 16 7 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 8 C -0.13 -0.93 5.32 -26.61 -0.14 -1.07 16 9 C -0.12 -0.58 5.88 -26.69 -0.16 -0.73 16 10 C -0.14 -0.78 6.10 -26.38 -0.16 -0.94 16 11 C 0.11 0.73 6.38 -3.48 -0.02 0.71 16 12 N -0.61 -6.62 2.97 -166.28 -0.49 -7.12 16 13 C 0.52 7.87 7.47 -10.99 -0.08 7.79 16 14 O -0.49 -9.37 12.25 -26.65 -0.33 -9.70 16 15 C 0.05 0.81 4.30 36.00 0.15 0.96 16 16 O -0.34 -6.99 9.66 -45.91 -0.44 -7.43 16 17 C 0.48 10.94 7.25 36.00 0.26 11.20 16 18 O -0.50 -12.34 15.21 -18.75 -0.29 -12.62 16 19 C 0.03 0.69 2.33 -92.92 -0.22 0.47 16 20 H 0.07 1.58 7.20 -51.93 -0.37 1.20 16 21 C -0.15 -3.30 8.60 37.16 0.32 -2.98 16 22 C -0.52 -14.98 8.96 -34.44 -0.31 -15.29 16 23 H 0.10 3.05 7.00 -52.49 -0.37 2.68 16 24 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 25 N -0.89 -27.28 13.96 55.43 0.77 -26.50 16 26 Si 0.88 21.59 24.37 -169.99 -4.14 17.44 16 27 H -0.27 -6.53 6.87 56.52 0.39 -6.14 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 29 H -0.26 -6.14 6.53 56.52 0.37 -5.77 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 34 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 35 H 0.08 0.79 7.94 -51.93 -0.41 0.37 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.65 5.93 -51.93 -0.31 0.34 16 43 H 0.10 1.37 7.93 -51.93 -0.41 0.96 16 44 H 0.10 1.30 7.69 -51.93 -0.40 0.90 16 45 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 46 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.05 1.19 3.27 -51.93 -0.17 1.02 16 48 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -37.48 385.06 -7.37 -44.84 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -7.54 Total: -1.21 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 0.10 Total: 10.60 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.28 Total: -33.62 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -1.86 Total: -43.86 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.14 Total: 17.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.48 -7.37 -44.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647271019.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.359 kcal (2) G-P(sol) polarization free energy of solvation -37.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds