Wall clock time and date at job start Wed Apr 1 2020 01:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45199 * 109.46684 * 2 1 4 4 C 1.34234 * 116.99774 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99855 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99964 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.58623 * 358.39306 * 6 4 3 8 8 C 1.53188 * 109.70180 * 238.03834 * 6 4 3 9 9 C 1.53046 * 109.31489 * 185.50699 * 8 6 4 10 10 C 1.53040 * 109.53789 * 61.36417 * 9 8 6 11 11 C 1.53630 * 109.24056 * 298.51571 * 10 9 8 12 12 N 1.46922 * 108.54484 * 54.85677 * 11 10 9 13 13 C 1.34773 * 120.63223 * 126.36876 * 12 11 10 14 14 O 1.21281 * 119.99755 * 173.68032 * 13 12 11 15 15 C 1.50693 * 120.00186 * 353.95169 * 13 12 11 16 16 O 1.45203 * 109.47469 * 179.97438 * 15 13 12 17 17 C 1.34231 * 116.99876 * 179.97438 * 16 15 13 18 18 O 1.20824 * 120.00151 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99463 * 180.02562 * 17 16 15 20 20 H 1.08993 * 109.47526 * 300.00202 * 19 17 16 21 21 C 1.53006 * 109.46993 * 60.00828 * 19 17 16 22 22 C 1.50706 * 109.46705 * 180.02562 * 19 17 16 23 23 H 1.07993 * 120.00324 * 0.02562 * 22 19 17 24 24 C 1.37878 * 119.99580 * 180.02562 * 22 19 17 25 25 N 1.31521 * 119.99618 * 180.02562 * 24 22 19 26 26 Si 1.86802 * 120.00346 * 0.02562 * 24 22 19 27 27 H 1.48501 * 109.47043 * 89.99954 * 26 24 22 28 28 H 1.48504 * 109.47044 * 210.00096 * 26 24 22 29 29 H 1.48502 * 109.46792 * 329.99912 * 26 24 22 30 30 H 1.09000 * 109.47418 * 299.98994 * 1 2 3 31 31 H 1.08999 * 109.47436 * 60.00063 * 1 2 3 32 32 H 1.09004 * 109.46779 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46935 * 240.00791 * 2 1 3 34 34 H 1.08992 * 109.47152 * 120.00551 * 2 1 3 35 35 H 1.09000 * 109.50141 * 305.45817 * 8 6 4 36 36 H 1.09006 * 109.50140 * 65.55526 * 8 6 4 37 37 H 1.08998 * 109.46332 * 181.38567 * 9 8 6 38 38 H 1.09005 * 109.45891 * 301.34468 * 9 8 6 39 39 H 1.08998 * 109.49598 * 58.58846 * 10 9 8 40 40 H 1.08992 * 109.49981 * 178.65185 * 10 9 8 41 41 H 1.08999 * 109.73911 * 295.11378 * 11 10 9 42 42 H 1.08995 * 109.66058 * 174.54879 * 11 10 9 43 43 H 1.08998 * 109.47394 * 300.00770 * 15 13 12 44 44 H 1.09004 * 109.46922 * 59.99849 * 15 13 12 45 45 H 1.09005 * 109.46521 * 299.99144 * 21 19 17 46 46 H 1.08993 * 109.47496 * 59.99356 * 21 19 17 47 47 H 1.08998 * 109.46907 * 179.97438 * 21 19 17 48 48 H 0.96996 * 119.99472 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.1116 3.6675 -0.0280 8 6 4.8228 3.1237 -1.2239 9 6 5.5101 4.4888 -1.1432 10 6 6.3818 4.5494 0.1132 11 6 5.4927 4.3818 1.3549 12 7 4.7233 3.1381 1.2142 13 6 4.7489 2.2015 2.1830 14 8 4.0226 1.2330 2.1094 15 6 5.6754 2.3607 3.3607 16 8 5.5166 1.2301 4.2579 17 6 6.2766 1.2187 5.3642 18 8 7.0486 2.1236 5.5763 19 6 6.1669 0.0771 6.3419 20 1 5.1470 0.0213 6.7224 21 6 6.5208 -1.2339 5.6369 22 6 7.1185 0.3043 7.4882 23 1 7.7401 1.1872 7.5071 24 6 7.1953 -0.6151 8.5128 25 7 8.0254 -0.4165 9.5135 26 14 6.1206 -2.1426 8.4798 27 1 6.8373 -3.2370 7.7771 28 1 5.8159 -2.5636 9.8710 29 1 4.8541 -1.8413 7.7652 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 5.5773 2.3372 -1.2428 36 1 4.2206 3.0726 -2.1311 37 1 6.1338 4.6341 -2.0252 38 1 4.7548 5.2735 -1.0994 39 1 7.1215 3.7495 0.0818 40 1 6.8896 5.5128 0.1576 41 1 4.8093 5.2272 1.4352 42 1 6.1158 4.3270 2.2474 43 1 6.7061 2.4039 3.0089 44 1 5.4338 3.2818 3.8912 45 1 5.8321 -1.3980 4.8080 46 1 7.5406 -1.1781 5.2564 47 1 6.4418 -2.0595 6.3441 48 1 8.0792 -1.0631 10.2345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647271019.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:03 Heat of formation + Delta-G solvation = -219.170495 kcal Electronic energy + Delta-G solvation = -31214.183301 eV Core-core repulsion = 26848.165339 eV Total energy + Delta-G solvation = -4366.017961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.43799 -41.55479 -40.44036 -38.68003 -37.59487 -37.39021 -36.02162 -34.24128 -33.49138 -33.16763 -32.23714 -30.00831 -27.23787 -27.04251 -25.38575 -25.26528 -23.87360 -22.54267 -22.01734 -21.62561 -20.23489 -19.15904 -19.05540 -18.41395 -18.18409 -17.81578 -17.64823 -17.51874 -16.91762 -16.80440 -16.27797 -16.13644 -15.39963 -15.23291 -15.08757 -14.94947 -14.81680 -14.49062 -14.40264 -14.16391 -14.02022 -13.90721 -13.73284 -13.51560 -13.35765 -12.97692 -12.84200 -12.66764 -12.66534 -12.48167 -12.31097 -12.21482 -11.92342 -11.82946 -11.71299 -11.56732 -11.51248 -11.34284 -11.28380 -11.22985 -10.89096 -10.80625 -9.94877 -8.35081 -6.44900 0.85906 1.18871 1.25107 1.33162 1.37219 1.39969 1.47837 1.63581 2.14184 2.28373 2.97846 3.18045 3.54637 3.66733 3.73624 3.85107 3.90585 3.96633 3.97659 3.99421 3.99860 4.09418 4.15859 4.30236 4.33153 4.40522 4.47474 4.58722 4.63533 4.71453 4.77975 4.82516 4.88619 4.90021 4.96430 5.07595 5.11214 5.19533 5.19824 5.26299 5.30289 5.39296 5.41913 5.53151 5.92600 6.17346 6.66145 6.68560 6.82758 6.89384 7.19834 8.81154 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012827 B = 0.003074 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.360840 B = 9106.632259 C =10879.485706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 O -0.363 6.363 4 C 0.469 3.531 5 O -0.532 6.532 6 C 0.157 3.843 7 H 0.135 0.865 8 C -0.120 4.120 9 C -0.110 4.110 10 C -0.138 4.138 11 C 0.096 3.904 12 N -0.597 5.597 13 C 0.512 3.488 14 O -0.537 6.537 15 C 0.046 3.954 16 O -0.349 6.349 17 C 0.484 3.516 18 O -0.526 6.526 19 C 0.020 3.980 20 H 0.076 0.924 21 C -0.140 4.140 22 C -0.530 4.530 23 H 0.046 0.954 24 C 0.023 3.977 25 N -0.940 5.940 26 Si 0.947 3.053 27 H -0.259 1.259 28 H -0.291 1.291 29 H -0.241 1.241 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.054 0.946 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.121 0.879 45 H 0.070 0.930 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.012 11.370 -27.315 32.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.012 4.012 3 O -0.280 6.280 4 C 0.313 3.687 5 O -0.421 6.421 6 C 0.053 3.947 7 H 0.153 0.847 8 C -0.159 4.159 9 C -0.147 4.147 10 C -0.176 4.176 11 C -0.024 4.024 12 N -0.335 5.335 13 C 0.300 3.700 14 O -0.414 6.414 15 C -0.030 4.030 16 O -0.266 6.266 17 C 0.328 3.672 18 O -0.414 6.414 19 C 0.001 3.999 20 H 0.094 0.906 21 C -0.198 4.198 22 C -0.568 4.568 23 H 0.064 0.936 24 C -0.176 4.176 25 N -0.578 5.578 26 Si 0.772 3.228 27 H -0.184 1.184 28 H -0.218 1.218 29 H -0.165 1.165 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.112 0.888 43 H 0.129 0.871 44 H 0.139 0.861 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.908 10.775 -27.155 31.939 hybrid contribution 0.301 -0.978 0.724 1.254 sum -12.607 9.797 -26.431 30.879 Atomic orbital electron populations 1.21797 0.89995 1.04290 1.03760 1.23103 0.97091 0.79490 1.01496 1.86393 1.24090 1.33335 1.84138 1.23480 0.81059 0.92759 0.71368 1.90648 1.60995 1.44284 1.46187 1.21066 0.95342 0.91201 0.87083 0.84699 1.21956 0.98625 1.00402 0.94886 1.21529 0.99704 0.94874 0.98596 1.22077 0.97829 1.04064 0.93648 1.22436 0.95178 0.84211 1.00615 1.48077 1.48732 1.20153 1.16555 1.20393 0.83277 0.82357 0.83952 1.90737 1.42293 1.31764 1.76590 1.22820 1.00693 0.90145 0.89355 1.86613 1.61323 1.46035 1.32580 1.24253 0.75882 0.87544 0.79519 1.90530 1.37385 1.38319 1.75184 1.19076 1.00184 0.89677 0.90961 0.90623 1.22006 1.01955 0.95903 0.99892 1.20963 1.22661 1.08720 1.04432 0.93571 1.25788 0.96348 1.01334 0.94127 1.70011 1.38388 1.38050 1.11383 0.85881 0.80631 0.79349 0.76971 1.18446 1.21770 1.16471 0.91897 0.90179 0.88480 0.91307 0.93690 0.92633 0.88027 0.89259 0.88765 0.92682 0.87276 0.87012 0.88792 0.87070 0.86104 0.91093 0.92621 0.92791 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 10.29 71.98 0.74 -1.42 16 2 C 0.06 1.46 6.19 71.98 0.45 1.91 16 3 O -0.36 -9.44 10.22 -49.60 -0.51 -9.95 16 4 C 0.47 13.11 4.52 71.23 0.32 13.43 16 5 O -0.53 -19.31 14.34 29.79 0.43 -18.88 16 6 C 0.16 2.84 3.33 44.23 0.15 2.99 16 7 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 8 C -0.12 -1.52 5.32 30.67 0.16 -1.36 16 9 C -0.11 -0.67 5.88 30.62 0.18 -0.49 16 10 C -0.14 -1.10 6.10 30.82 0.19 -0.91 16 11 C 0.10 1.04 6.38 86.51 0.55 1.59 16 12 N -0.60 -12.00 2.97 -798.37 -2.37 -14.37 16 13 C 0.51 15.42 7.47 87.66 0.65 16.07 16 14 O -0.54 -21.01 12.25 27.76 0.34 -20.67 16 15 C 0.05 1.41 4.30 71.23 0.31 1.72 16 16 O -0.35 -14.15 9.66 -45.07 -0.44 -14.59 16 17 C 0.48 22.40 7.25 71.24 0.52 22.92 16 18 O -0.53 -26.43 15.21 21.97 0.33 -26.10 16 19 C 0.02 1.00 2.33 -12.28 -0.03 0.97 16 20 H 0.08 3.57 7.20 -2.39 -0.02 3.55 16 21 C -0.14 -6.13 8.60 71.98 0.62 -5.51 16 22 C -0.53 -31.45 8.96 25.60 0.23 -31.22 16 23 H 0.05 3.12 7.00 -2.91 -0.02 3.10 16 24 C 0.02 1.32 5.45 84.65 0.46 1.78 16 25 N -0.94 -59.01 13.96 21.45 0.30 -58.71 16 26 Si 0.95 43.91 24.37 68.60 1.67 45.58 16 27 H -0.26 -11.31 6.87 99.48 0.68 -10.63 16 28 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 29 H -0.24 -10.26 6.53 99.48 0.65 -9.61 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 34 H 0.04 1.32 8.13 -2.39 -0.02 1.30 16 35 H 0.05 1.03 7.94 -2.39 -0.02 1.01 16 36 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 39 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.09 1.06 5.93 -2.39 -0.01 1.05 16 43 H 0.11 3.06 7.93 -2.39 -0.02 3.04 16 44 H 0.12 3.07 7.69 -2.39 -0.02 3.05 16 45 H 0.07 2.76 8.11 -2.38 -0.02 2.74 16 46 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.05 2.32 3.27 -2.39 -0.01 2.32 16 48 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -86.45 385.06 6.14 -80.30 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.88 Total: 14.92 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 5.50 Total: 22.48 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -2.07 Total: -73.08 kcal Atomic # 8 Polarization: -90.35 SS G_CDS: 0.16 Total: -90.19 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.67 Total: 45.58 kcal Total: -86.45 6.14 -80.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647271019.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.867 kcal (2) G-P(sol) polarization free energy of solvation -86.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds