Wall clock time and date at job start Wed Apr 1 2020 01:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47237 * 2 1 4 4 C 1.34230 * 116.99926 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00089 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99709 * 180.02562 * 4 3 2 7 7 H 1.08995 * 109.70074 * 1.47393 * 6 4 3 8 8 C 1.53188 * 109.58758 * 121.83476 * 6 4 3 9 9 C 1.53044 * 109.33848 * 174.39986 * 8 6 4 10 10 C 1.53037 * 109.54286 * 298.68548 * 9 8 6 11 11 C 1.53190 * 109.33867 * 61.31207 * 10 9 8 12 12 N 1.46928 * 109.58020 * 241.12218 * 6 4 3 13 13 C 1.34775 * 120.63809 * 6.58333 * 12 6 4 14 14 O 1.21291 * 119.99491 * 6.03377 * 13 12 6 15 15 C 1.50692 * 120.00619 * 186.04028 * 13 12 6 16 16 O 1.45195 * 109.47333 * 179.97438 * 15 13 12 17 17 C 1.34233 * 117.00326 * 179.97438 * 16 15 13 18 18 O 1.20828 * 119.99662 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00522 * 180.02562 * 17 16 15 20 20 H 1.09003 * 109.47077 * 59.99217 * 19 17 16 21 21 C 1.53003 * 109.46720 * 299.99899 * 19 17 16 22 22 C 1.50692 * 109.47287 * 180.02562 * 19 17 16 23 23 H 1.07999 * 120.00037 * 359.97438 * 22 19 17 24 24 C 1.37873 * 119.99850 * 179.97438 * 22 19 17 25 25 N 1.31514 * 120.00381 * 359.97438 * 24 22 19 26 26 Si 1.86802 * 119.99959 * 179.97438 * 24 22 19 27 27 H 1.48502 * 109.47265 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47084 * 120.00055 * 26 24 22 29 29 H 1.48497 * 109.47283 * 239.99827 * 26 24 22 30 30 H 1.08997 * 109.46916 * 299.99754 * 1 2 3 31 31 H 1.09004 * 109.47054 * 59.99934 * 1 2 3 32 32 H 1.08999 * 109.46810 * 179.97438 * 1 2 3 33 33 H 1.09010 * 109.47116 * 240.00045 * 2 1 3 34 34 H 1.08992 * 109.47125 * 120.00520 * 2 1 3 35 35 H 1.09001 * 109.49942 * 294.37021 * 8 6 4 36 36 H 1.09000 * 109.49810 * 54.43470 * 8 6 4 37 37 H 1.09002 * 109.45184 * 58.67471 * 9 8 6 38 38 H 1.09001 * 109.46072 * 178.62558 * 9 8 6 39 39 H 1.09007 * 109.46859 * 301.36589 * 10 9 8 40 40 H 1.08998 * 109.52378 * 181.29902 * 10 9 8 41 41 H 1.09004 * 109.58869 * 185.59476 * 11 10 9 42 42 H 1.09000 * 109.58719 * 65.16797 * 11 10 9 43 43 H 1.09003 * 109.46990 * 299.99704 * 15 13 12 44 44 H 1.08996 * 109.47543 * 59.99687 * 15 13 12 45 45 H 1.08997 * 109.47273 * 300.00013 * 21 19 17 46 46 H 1.09000 * 109.47085 * 59.99650 * 21 19 17 47 47 H 1.08997 * 109.47100 * 179.97438 * 21 19 17 48 48 H 0.97001 * 120.00439 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.1133 3.6690 0.0272 8 6 4.8211 3.1203 1.2258 9 6 5.5120 4.4837 1.1483 10 6 6.3856 4.5442 -0.1068 11 6 5.5030 4.3774 -1.3477 12 7 4.7262 3.1376 -1.2124 13 6 4.7523 2.2017 -2.1819 14 8 4.0245 1.2341 -2.1104 15 6 5.6859 2.3573 -3.3545 16 8 5.5272 1.2277 -4.2528 17 6 6.2923 1.2137 -5.3556 18 8 7.0686 2.1159 -5.5637 19 6 6.1822 0.0735 -6.3349 20 1 5.1639 0.0225 -6.7202 21 6 6.5269 -1.2396 -5.6293 22 6 7.1411 0.2969 -7.4758 23 1 7.7672 1.1767 -7.4906 24 6 7.2189 -0.6220 -8.5007 25 7 6.4568 -1.6937 -8.4825 26 14 8.4070 -0.3448 -9.9153 27 1 9.1441 0.9263 -9.7009 28 1 9.3714 -1.4722 -9.9798 29 1 7.6494 -0.2681 -11.1902 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 4.2171 3.0695 2.1317 36 1 5.5734 2.3318 1.2455 37 1 4.7588 5.2704 1.1043 38 1 6.1344 4.6262 2.0317 39 1 7.1236 3.7426 -0.0749 40 1 6.8954 5.5067 -0.1497 41 1 6.1302 4.3204 -2.2374 42 1 4.8244 5.2265 -1.4304 43 1 5.4516 3.2799 -3.8856 44 1 6.7150 2.3951 -2.9972 45 1 7.5452 -1.1886 -5.2439 46 1 5.8337 -1.4013 -4.8038 47 1 6.4469 -2.0644 -6.3374 48 1 6.5113 -2.3400 -9.2037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647271020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:05 Heat of formation + Delta-G solvation = -225.811727 kcal Electronic energy + Delta-G solvation = -31130.128068 eV Core-core repulsion = 26763.822122 eV Total energy + Delta-G solvation = -4366.305947 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.43676 -41.48650 -40.43268 -38.68107 -37.58208 -37.35732 -35.97170 -34.23705 -33.21496 -32.74756 -32.23764 -29.92501 -27.33453 -27.02042 -25.34913 -25.04004 -23.87331 -22.55910 -22.01913 -21.65827 -20.23321 -19.14929 -18.74542 -18.38960 -18.00282 -17.80107 -17.65953 -17.46425 -16.89502 -16.75484 -16.25477 -16.01446 -15.38359 -15.19259 -14.99919 -14.90405 -14.70728 -14.46752 -14.42624 -14.01451 -13.88552 -13.68833 -13.51451 -13.46608 -13.01204 -12.84447 -12.79332 -12.66765 -12.65137 -12.48723 -12.35303 -12.21593 -12.07034 -11.88695 -11.82726 -11.70788 -11.51907 -11.29179 -11.20166 -11.14924 -10.88536 -10.56951 -9.95012 -8.21773 -6.36545 0.87355 1.19920 1.31852 1.40152 1.42250 1.45243 1.57823 1.63653 2.17036 2.44060 3.08307 3.19257 3.54502 3.66522 3.73820 3.86475 3.91612 3.96654 3.97866 4.00536 4.08867 4.15140 4.15811 4.32624 4.40828 4.59753 4.61353 4.71103 4.77743 4.82449 4.83462 4.89603 4.90498 4.96982 5.07670 5.10747 5.19723 5.22699 5.30655 5.35822 5.42061 5.52728 5.63416 5.81627 5.92960 6.03497 6.68394 6.70896 6.87160 6.92838 7.32756 8.85478 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.002838 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.810839 B = 9864.104628 C =11501.713223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.062 3.938 3 O -0.362 6.362 4 C 0.468 3.532 5 O -0.533 6.533 6 C 0.157 3.843 7 H 0.136 0.864 8 C -0.121 4.121 9 C -0.109 4.109 10 C -0.138 4.138 11 C 0.096 3.904 12 N -0.597 5.597 13 C 0.511 3.489 14 O -0.538 6.538 15 C 0.047 3.953 16 O -0.354 6.354 17 C 0.477 3.523 18 O -0.529 6.529 19 C 0.051 3.949 20 H 0.048 0.952 21 C -0.121 4.121 22 C -0.537 4.537 23 H 0.063 0.937 24 C 0.019 3.981 25 N -0.912 5.912 26 Si 0.970 3.030 27 H -0.271 1.271 28 H -0.274 1.274 29 H -0.273 1.273 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.111 0.889 45 H 0.032 0.968 46 H 0.035 0.965 47 H 0.080 0.920 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.616 15.363 23.204 28.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.012 4.012 3 O -0.279 6.279 4 C 0.312 3.688 5 O -0.422 6.422 6 C 0.053 3.947 7 H 0.154 0.846 8 C -0.159 4.159 9 C -0.147 4.147 10 C -0.176 4.176 11 C -0.024 4.024 12 N -0.335 5.335 13 C 0.299 3.701 14 O -0.416 6.416 15 C -0.030 4.030 16 O -0.271 6.271 17 C 0.322 3.678 18 O -0.418 6.418 19 C 0.032 3.968 20 H 0.066 0.934 21 C -0.179 4.179 22 C -0.574 4.574 23 H 0.082 0.918 24 C -0.181 4.181 25 N -0.551 5.551 26 Si 0.794 3.206 27 H -0.196 1.196 28 H -0.199 1.199 29 H -0.199 1.199 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.072 0.928 40 H 0.129 0.871 41 H 0.112 0.888 42 H 0.130 0.870 43 H 0.139 0.861 44 H 0.129 0.871 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.099 0.901 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.636 14.657 23.104 28.407 hybrid contribution 0.665 -0.638 -0.969 1.337 sum -6.971 14.019 22.135 27.113 Atomic orbital electron populations 1.21795 0.89886 1.04308 1.03792 1.23106 0.97176 0.79512 1.01424 1.86387 1.24103 1.33299 1.84145 1.23527 0.81059 0.92833 0.71350 1.90652 1.61024 1.44345 1.46194 1.21077 0.95338 0.91092 0.87163 0.84615 1.21963 0.98634 1.00482 0.94824 1.21527 0.99674 0.94816 0.98634 1.22007 0.97864 1.04113 0.93637 1.22353 0.95095 0.84299 1.00682 1.48086 1.48447 1.20406 1.16585 1.20451 0.83363 0.82303 0.84007 1.90746 1.42410 1.31877 1.76541 1.22803 1.00472 0.90293 0.89440 1.86662 1.61265 1.46115 1.33053 1.24882 0.75721 0.87721 0.79430 1.90465 1.37477 1.38476 1.75379 1.18694 0.99420 0.88488 0.90183 0.93414 1.21563 0.98455 0.99150 0.98706 1.21276 1.22594 1.08340 1.05216 0.91841 1.25739 0.97476 0.94376 1.00472 1.69992 1.39917 1.11430 1.33741 0.85321 0.78558 0.78294 0.78388 1.19558 1.19919 1.19880 0.90024 0.91941 0.88482 0.93939 0.91245 0.87987 0.92717 0.88710 0.89176 0.92764 0.87081 0.88792 0.86988 0.86083 0.87122 0.94921 0.94581 0.90137 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 10.29 71.98 0.74 -1.65 16 2 C 0.06 1.58 6.19 71.98 0.45 2.02 16 3 O -0.36 -10.10 10.22 -49.62 -0.51 -10.60 16 4 C 0.47 13.96 4.52 71.24 0.32 14.28 16 5 O -0.53 -20.53 14.33 29.79 0.43 -20.10 16 6 C 0.16 3.07 3.34 44.23 0.15 3.21 16 7 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 8 C -0.12 -1.65 5.31 30.67 0.16 -1.49 16 9 C -0.11 -0.74 5.89 30.62 0.18 -0.56 16 10 C -0.14 -1.18 6.08 30.67 0.19 -0.99 16 11 C 0.10 1.12 6.35 86.36 0.55 1.67 16 12 N -0.60 -12.91 2.97 -799.18 -2.38 -15.28 16 13 C 0.51 16.54 7.47 87.65 0.65 17.19 16 14 O -0.54 -22.71 12.26 27.71 0.34 -22.37 16 15 C 0.05 1.52 4.30 71.23 0.31 1.82 16 16 O -0.35 -15.72 9.66 -45.09 -0.44 -16.15 16 17 C 0.48 23.45 7.25 71.24 0.52 23.96 16 18 O -0.53 -26.59 15.21 21.96 0.33 -26.25 16 19 C 0.05 2.78 2.74 -12.29 -0.03 2.74 16 20 H 0.05 2.73 8.14 -2.39 -0.02 2.71 16 21 C -0.12 -6.24 8.90 71.98 0.64 -5.60 16 22 C -0.54 -31.01 8.37 25.60 0.21 -30.79 16 23 H 0.06 3.77 6.76 -2.91 -0.02 3.75 16 24 C 0.02 1.07 5.30 84.65 0.45 1.52 16 25 N -0.91 -52.24 11.32 21.45 0.24 -52.00 16 26 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 27 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 28 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 29 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.04 1.36 8.13 -2.38 -0.02 1.34 16 34 H 0.07 1.66 8.13 -2.39 -0.02 1.64 16 35 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 1.08 7.93 -2.39 -0.02 1.06 16 37 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.09 1.13 5.93 -2.39 -0.01 1.12 16 42 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.12 3.27 7.69 -2.39 -0.02 3.25 16 44 H 0.11 3.24 7.93 -2.39 -0.02 3.23 16 45 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.04 1.73 8.11 -2.39 -0.02 1.71 16 47 H 0.08 4.41 6.07 -2.39 -0.01 4.40 16 48 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -81.87 391.82 6.49 -75.39 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.95 Total: 13.80 kcal Atomic # 6 Polarization: 21.87 SS G_CDS: 5.48 Total: 27.35 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -2.13 Total: -67.28 kcal Atomic # 8 Polarization: -95.64 SS G_CDS: 0.16 Total: -95.48 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -81.87 6.49 -75.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647271020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.426 kcal (2) G-P(sol) polarization free energy of solvation -81.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds