Wall clock time and date at job start Wed Apr 1 2020 00:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81394 * 102.99979 * 2 1 4 4 H 1.09007 * 109.47342 * 55.00057 * 3 2 1 5 5 C 1.52995 * 109.47189 * 294.99766 * 3 2 1 6 6 C 1.50699 * 109.47111 * 174.99490 * 3 2 1 7 7 O 1.21288 * 120.00153 * 25.00643 * 6 3 2 8 8 N 1.34776 * 120.00362 * 205.00135 * 6 3 2 9 9 C 1.46503 * 120.00068 * 180.02562 * 8 6 3 10 10 C 1.53005 * 109.46718 * 180.02562 * 9 8 6 11 11 H 1.08990 * 115.52003 * 29.58079 * 10 9 8 12 12 C 1.53006 * 117.40731 * 244.21485 * 10 9 8 13 13 H 1.09003 * 119.52038 * 4.07691 * 12 10 9 14 14 C 1.54376 * 118.12820 * 160.67107 * 12 10 9 15 15 N 1.48565 * 104.59130 * 87.23144 * 14 12 10 16 16 C 1.46907 * 110.99899 * 200.95940 * 15 14 12 17 17 C 1.50696 * 109.46917 * 189.99966 * 16 15 14 18 18 O 1.21288 * 120.00198 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99689 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99829 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00188 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99620 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00337 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99870 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46862 * 60.00150 * 24 22 20 26 26 H 1.48498 * 109.47328 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47458 * 300.00314 * 24 22 20 28 28 C 1.52142 * 104.44326 * 320.24918 * 15 14 12 29 29 C 1.53003 * 117.43889 * 175.00275 * 10 9 8 30 30 H 1.09002 * 119.52639 * 355.86343 * 29 10 9 31 31 H 1.08994 * 109.47679 * 300.00179 * 1 2 3 32 32 H 1.09003 * 109.46951 * 60.00131 * 1 2 3 33 33 H 1.09004 * 109.47252 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47221 * 60.00564 * 5 3 2 35 35 H 1.09001 * 109.47165 * 180.02562 * 5 3 2 36 36 H 1.08998 * 109.47485 * 299.99866 * 5 3 2 37 37 H 0.97002 * 119.99733 * 0.02562 * 8 6 3 38 38 H 1.09000 * 109.47224 * 60.00365 * 9 8 6 39 39 H 1.08992 * 109.47398 * 299.99853 * 9 8 6 40 40 H 1.08999 * 110.41445 * 206.00579 * 14 12 10 41 41 H 1.08994 * 110.41205 * 328.45896 * 14 12 10 42 42 H 1.09001 * 109.46903 * 310.00160 * 16 15 14 43 43 H 1.08994 * 109.46880 * 69.99933 * 16 15 14 44 44 H 0.96995 * 120.00421 * 0.02562 * 19 17 16 45 45 H 0.97004 * 119.99606 * 179.97438 * 23 22 20 46 46 H 1.08997 * 110.22960 * 281.87154 * 28 15 14 47 47 H 1.09003 * 112.21772 * 158.30499 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 1 1.7294 2.2541 0.8419 5 6 1.7428 2.4015 -1.3073 6 6 3.7142 1.9385 0.1240 7 8 4.4585 1.0531 -0.2408 8 7 4.2216 3.0754 0.6400 9 6 5.6722 3.2419 0.7600 10 6 5.9796 4.6101 1.3720 11 1 5.2220 5.0018 2.0507 12 6 6.7356 5.6168 0.5025 13 1 6.9708 5.3636 -0.5313 14 6 6.6653 7.1097 0.8890 15 7 7.7708 7.2964 1.8638 16 6 7.5485 8.4909 2.6895 17 6 8.7913 8.7878 3.4884 18 8 9.7662 8.0742 3.3809 19 7 8.8195 9.8461 4.3223 20 6 9.9501 10.1159 5.0495 21 1 10.8181 9.4806 4.9538 22 6 9.9789 11.2067 5.9097 23 7 8.9225 11.9795 6.0266 24 14 11.5194 11.5748 6.9000 25 1 12.6561 11.8168 5.9754 26 1 11.2949 12.7826 7.7342 27 1 11.8324 10.4180 7.7770 28 6 7.7389 6.0387 2.7193 29 6 7.4423 4.9284 1.6884 30 1 8.2034 4.1629 1.5375 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 0.6636 2.2779 -1.3969 35 1 1.9884 3.4635 -1.3075 36 1 2.2355 1.9149 -2.1491 37 1 3.6263 3.7835 0.9320 38 1 6.1286 3.1744 -0.2276 39 1 6.0760 2.4585 1.4012 40 1 6.8220 7.7374 0.0118 41 1 5.7061 7.3372 1.3540 42 1 7.3188 9.3400 2.0458 43 1 6.7142 8.3133 3.3681 44 1 8.0398 10.4165 4.4086 45 1 8.9426 12.7408 6.6274 46 1 6.9346 6.1017 3.4522 47 1 8.6920 5.8528 3.2146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649473407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:51 Heat of formation + Delta-G solvation = -29.755471 kcal Electronic energy + Delta-G solvation = -26291.644603 eV Core-core repulsion = 22408.885915 eV Total energy + Delta-G solvation = -3882.758687 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.38869 -39.69130 -37.98975 -35.53172 -34.20045 -33.83156 -33.24642 -31.21069 -29.37111 -28.71099 -28.33312 -26.60868 -24.95346 -24.18909 -21.88800 -21.29243 -20.43013 -20.18152 -19.10930 -17.90707 -17.83208 -17.20571 -16.20667 -15.99903 -15.75456 -15.44889 -15.01887 -14.75446 -14.57968 -14.50282 -14.32562 -14.06651 -13.84866 -13.66350 -13.43035 -13.34635 -12.96612 -12.87581 -12.67576 -12.49555 -12.30256 -12.24976 -11.91521 -11.55729 -11.45004 -11.34450 -11.11443 -10.88436 -10.44209 -10.43909 -10.32578 -10.21609 -10.14390 -10.00117 -9.48226 -9.42372 -8.51328 -8.12576 -8.03552 -7.94756 -6.41188 -3.81956 0.96213 2.00190 2.23999 2.68074 3.20422 3.25935 3.30299 3.38151 3.88727 3.95607 4.12576 4.18139 4.25127 4.27743 4.42788 4.51969 4.61651 4.65582 4.83309 4.87071 4.92080 4.97272 5.03662 5.13677 5.21825 5.23324 5.24756 5.33138 5.41770 5.48282 5.53238 5.60765 5.74143 5.79875 5.82586 6.00472 6.03621 6.09745 6.27038 6.36531 6.90930 6.99866 7.15879 7.55439 7.74690 8.06652 8.62751 9.18922 9.55212 10.07508 10.76577 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029831 B = 0.001522 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.389710 B =18393.848175 C =18547.984584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.189 6.189 3 C -0.094 4.094 4 H 0.107 0.893 5 C -0.142 4.142 6 C 0.533 3.467 7 O -0.518 6.518 8 N -0.721 5.721 9 C 0.155 3.845 10 C -0.146 4.146 11 H 0.106 0.894 12 C -0.152 4.152 13 H 0.119 0.881 14 C 0.059 3.941 15 N -0.483 5.483 16 C 0.032 3.968 17 C 0.446 3.554 18 O -0.576 6.576 19 N -0.566 5.566 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.067 3.933 29 C -0.143 4.143 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.402 0.598 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.089 0.911 43 H 0.050 0.950 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.043 0.957 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.551 -16.667 -12.377 29.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.037 5.963 3 C -0.226 4.226 4 H 0.125 0.875 5 C -0.201 4.201 6 C 0.317 3.683 7 O -0.393 6.393 8 N -0.373 5.373 9 C 0.031 3.969 10 C -0.165 4.165 11 H 0.124 0.876 12 C -0.171 4.171 13 H 0.137 0.863 14 C -0.069 4.069 15 N -0.207 5.207 16 C -0.100 4.100 17 C 0.231 3.769 18 O -0.459 6.459 19 N -0.203 5.203 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.059 4.059 29 C -0.162 4.162 30 H 0.138 0.862 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.237 0.763 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.060 0.940 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.144 -18.387 -12.848 28.851 hybrid contribution -1.785 2.126 1.226 3.035 sum -19.930 -16.261 -11.622 28.225 Atomic orbital electron populations 1.23560 0.95437 1.06810 1.04990 1.87504 1.05132 1.05837 1.97850 1.23323 0.97125 0.98622 1.03536 0.87495 1.21996 1.02010 1.01201 0.94938 1.19624 0.88818 0.82265 0.77613 1.90772 1.60196 1.40698 1.47600 1.45893 1.08369 1.18617 1.64470 1.20864 0.79655 0.95167 1.01170 1.22664 0.96161 0.95172 1.02528 0.87583 1.23575 1.04672 0.92253 0.96579 0.86313 1.22645 0.93119 0.93932 0.97174 1.66252 1.40076 1.01173 1.13237 1.22054 0.97159 0.94335 0.96407 1.19681 0.89345 0.84012 0.83898 1.90515 1.36550 1.50481 1.68373 1.41854 1.15767 1.25108 1.37594 1.19652 0.93536 1.10791 1.18849 0.87982 1.25244 0.98568 0.95980 0.98124 1.69606 1.29060 1.17260 1.38553 0.85924 0.81213 0.77730 0.79387 1.19897 1.21005 1.19940 1.23309 1.02411 0.87121 0.93078 1.23482 0.93368 1.00775 0.98588 0.86250 0.90454 0.90292 0.87695 0.91186 0.91005 0.90465 0.76335 0.90794 0.90491 0.89528 0.94004 0.89328 0.93246 0.77565 0.91876 0.93831 0.87826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.61 10.45 101.05 1.06 0.45 16 2 S -0.19 -1.60 21.10 -107.50 -2.27 -3.87 16 3 C -0.09 -0.63 3.17 -27.89 -0.09 -0.71 16 4 H 0.11 0.47 8.14 -51.92 -0.42 0.05 16 5 C -0.14 -0.70 9.08 37.16 0.34 -0.36 16 6 C 0.53 5.05 6.95 -10.99 -0.08 4.97 16 7 O -0.52 -7.17 16.14 5.55 0.09 -7.08 16 8 N -0.72 -5.29 5.56 -60.29 -0.33 -5.63 16 9 C 0.15 1.33 5.95 -4.04 -0.02 1.31 16 10 C -0.15 -1.28 5.38 -90.61 -0.49 -1.77 16 11 H 0.11 0.86 8.04 -51.93 -0.42 0.45 16 12 C -0.15 -1.57 6.73 -89.24 -0.60 -2.17 16 13 H 0.12 1.13 8.12 -51.93 -0.42 0.71 16 14 C 0.06 0.71 6.27 -2.18 -0.01 0.69 16 15 N -0.48 -7.86 5.03 -228.13 -1.15 -9.01 16 16 C 0.03 0.57 5.32 -4.97 -0.03 0.54 16 17 C 0.45 10.47 7.63 -10.99 -0.08 10.38 16 18 O -0.58 -15.56 14.90 5.55 0.08 -15.48 16 19 N -0.57 -14.28 5.29 -10.97 -0.06 -14.34 16 20 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 24 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C 0.07 1.02 5.91 -0.11 0.00 1.01 16 29 C -0.14 -1.65 6.75 -89.23 -0.60 -2.26 16 30 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.26 7.14 -51.92 -0.37 -0.11 16 33 H 0.10 0.39 8.14 -51.92 -0.42 -0.04 16 34 H 0.07 0.24 6.92 -51.93 -0.36 -0.12 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.40 1.88 8.40 -40.82 -0.34 1.54 16 38 H 0.07 0.69 7.94 -51.93 -0.41 0.28 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.04 0.45 8.00 -51.93 -0.42 0.03 16 42 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 43 H 0.05 0.78 7.80 -51.93 -0.41 0.37 16 44 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.04 0.62 7.80 -51.93 -0.41 0.21 16 47 H 0.10 1.85 7.41 -51.93 -0.38 1.47 16 LS Contribution 400.88 15.07 6.04 6.04 Total: -1.00 -34.32 400.88 -10.31 -44.63 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.57 Total: 8.32 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.85 Total: 4.13 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.82 Total: -52.70 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.17 Total: -22.56 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.27 Total: -3.87 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.32 -10.31 -44.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649473407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.875 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds