Wall clock time and date at job start Wed Apr 1 2020 00:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81394 * 102.99979 * 2 1 4 4 H 1.09007 * 109.47342 * 55.00057 * 3 2 1 5 5 C 1.52995 * 109.47189 * 294.99766 * 3 2 1 6 6 C 1.50699 * 109.47111 * 174.99490 * 3 2 1 7 7 O 1.21288 * 120.00153 * 25.00643 * 6 3 2 8 8 N 1.34776 * 120.00362 * 205.00135 * 6 3 2 9 9 C 1.46503 * 120.00068 * 180.02562 * 8 6 3 10 10 C 1.53005 * 109.46718 * 180.02562 * 9 8 6 11 11 H 1.08990 * 115.52003 * 29.58079 * 10 9 8 12 12 C 1.53006 * 117.40731 * 244.21485 * 10 9 8 13 13 H 1.09003 * 119.52038 * 4.07691 * 12 10 9 14 14 C 1.54376 * 118.12820 * 160.67107 * 12 10 9 15 15 N 1.48565 * 104.59130 * 87.23144 * 14 12 10 16 16 C 1.46907 * 110.99899 * 200.95940 * 15 14 12 17 17 C 1.50696 * 109.46917 * 189.99966 * 16 15 14 18 18 O 1.21288 * 120.00198 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99689 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99829 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00188 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99620 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00337 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99870 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46862 * 60.00150 * 24 22 20 26 26 H 1.48498 * 109.47328 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47458 * 300.00314 * 24 22 20 28 28 C 1.52142 * 104.44326 * 320.24918 * 15 14 12 29 29 C 1.53003 * 117.43889 * 175.00275 * 10 9 8 30 30 H 1.09002 * 119.52639 * 355.86343 * 29 10 9 31 31 H 1.08994 * 109.47679 * 300.00179 * 1 2 3 32 32 H 1.09003 * 109.46951 * 60.00131 * 1 2 3 33 33 H 1.09004 * 109.47252 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47221 * 60.00564 * 5 3 2 35 35 H 1.09001 * 109.47165 * 180.02562 * 5 3 2 36 36 H 1.08998 * 109.47485 * 299.99866 * 5 3 2 37 37 H 0.97002 * 119.99733 * 0.02562 * 8 6 3 38 38 H 1.09000 * 109.47224 * 60.00365 * 9 8 6 39 39 H 1.08992 * 109.47398 * 299.99853 * 9 8 6 40 40 H 1.08999 * 110.41445 * 206.00579 * 14 12 10 41 41 H 1.08994 * 110.41205 * 328.45896 * 14 12 10 42 42 H 1.09001 * 109.46903 * 310.00160 * 16 15 14 43 43 H 1.08994 * 109.46880 * 69.99933 * 16 15 14 44 44 H 0.96995 * 120.00421 * 0.02562 * 19 17 16 45 45 H 0.97004 * 119.99606 * 179.97438 * 23 22 20 46 46 H 1.08997 * 110.22960 * 281.87154 * 28 15 14 47 47 H 1.09003 * 112.21772 * 158.30499 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 1 1.7294 2.2541 0.8419 5 6 1.7428 2.4015 -1.3073 6 6 3.7142 1.9385 0.1240 7 8 4.4585 1.0531 -0.2408 8 7 4.2216 3.0754 0.6400 9 6 5.6722 3.2419 0.7600 10 6 5.9796 4.6101 1.3720 11 1 5.2220 5.0018 2.0507 12 6 6.7356 5.6168 0.5025 13 1 6.9708 5.3636 -0.5313 14 6 6.6653 7.1097 0.8890 15 7 7.7708 7.2964 1.8638 16 6 7.5485 8.4909 2.6895 17 6 8.7913 8.7878 3.4884 18 8 9.7662 8.0742 3.3809 19 7 8.8195 9.8461 4.3223 20 6 9.9501 10.1159 5.0495 21 1 10.8181 9.4806 4.9538 22 6 9.9789 11.2067 5.9097 23 7 8.9225 11.9795 6.0266 24 14 11.5194 11.5748 6.9000 25 1 12.6561 11.8168 5.9754 26 1 11.2949 12.7826 7.7342 27 1 11.8324 10.4180 7.7770 28 6 7.7389 6.0387 2.7193 29 6 7.4423 4.9284 1.6884 30 1 8.2034 4.1629 1.5375 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 0.6636 2.2779 -1.3969 35 1 1.9884 3.4635 -1.3075 36 1 2.2355 1.9149 -2.1491 37 1 3.6263 3.7835 0.9320 38 1 6.1286 3.1744 -0.2276 39 1 6.0760 2.4585 1.4012 40 1 6.8220 7.7374 0.0118 41 1 5.7061 7.3372 1.3540 42 1 7.3188 9.3400 2.0458 43 1 6.7142 8.3133 3.3681 44 1 8.0398 10.4165 4.4086 45 1 8.9426 12.7408 6.6274 46 1 6.9346 6.1017 3.4522 47 1 8.6920 5.8528 3.2146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649473407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:50 Heat of formation + Delta-G solvation = -55.412124 kcal Electronic energy + Delta-G solvation = -26292.757159 eV Core-core repulsion = 22408.885915 eV Total energy + Delta-G solvation = -3883.871243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26445 -40.64737 -39.73337 -36.53392 -35.87934 -34.87298 -34.02937 -33.23024 -29.97921 -29.56984 -29.36003 -27.81240 -26.29536 -25.16001 -23.04083 -22.04741 -21.29120 -21.10140 -20.86195 -19.84363 -18.56064 -17.86518 -17.72352 -16.98359 -16.64393 -16.47596 -16.37281 -16.13077 -15.79122 -15.38117 -15.26519 -15.07406 -14.78652 -14.67928 -14.32406 -14.30278 -13.94893 -13.82080 -13.52479 -13.48827 -13.26025 -13.13888 -12.95677 -12.94131 -12.70684 -12.54547 -12.43077 -12.27037 -12.14873 -12.09017 -11.48187 -11.23181 -11.01753 -10.84372 -10.80198 -10.30570 -10.15578 -9.99685 -9.32170 -8.73399 -8.45745 -5.94254 0.45620 1.39884 1.41660 1.47745 1.52341 1.65393 2.01795 2.07591 2.28790 2.53806 2.81475 3.21002 3.30942 3.41101 3.56669 3.68861 3.82602 3.97406 4.02656 4.10245 4.14325 4.23247 4.30241 4.36040 4.38071 4.42614 4.48871 4.55377 4.58363 4.62319 4.67683 4.68998 4.74073 4.93220 4.95232 5.04032 5.14091 5.19017 5.25176 5.36358 5.41310 5.73364 5.89751 6.09977 6.41126 6.62343 7.11273 7.14385 7.58182 8.14877 8.71406 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029831 B = 0.001522 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.389710 B =18393.848175 C =18547.984584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.276 6.276 3 C -0.076 4.076 4 H 0.136 0.864 5 C -0.139 4.139 6 C 0.528 3.472 7 O -0.569 6.569 8 N -0.706 5.706 9 C 0.159 3.841 10 C -0.110 4.110 11 H 0.124 0.876 12 C -0.143 4.143 13 H 0.130 0.870 14 C 0.060 3.940 15 N -0.513 5.513 16 C 0.046 3.954 17 C 0.441 3.559 18 O -0.618 6.618 19 N -0.575 5.575 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.273 1.273 28 C 0.067 3.933 29 C -0.162 4.162 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.419 0.581 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.052 0.948 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.357 -15.759 -12.751 30.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.051 6.051 3 C -0.208 4.208 4 H 0.154 0.846 5 C -0.198 4.198 6 C 0.314 3.686 7 O -0.447 6.447 8 N -0.359 5.359 9 C 0.035 3.965 10 C -0.129 4.129 11 H 0.142 0.858 12 C -0.162 4.162 13 H 0.148 0.852 14 C -0.067 4.067 15 N -0.238 5.238 16 C -0.085 4.085 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.213 5.213 20 C -0.464 4.464 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.198 1.198 28 C -0.059 4.059 29 C -0.182 4.182 30 H 0.134 0.866 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.128 0.872 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.257 0.743 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.128 0.872 43 H 0.091 0.909 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.006 -17.441 -13.221 30.335 hybrid contribution -0.925 1.812 1.311 2.421 sum -21.931 -15.629 -11.910 29.446 Atomic orbital electron populations 1.23569 0.91065 1.07643 1.06393 1.87813 1.10063 1.09085 1.98097 1.23290 0.95022 0.96858 1.05632 0.84590 1.22001 1.02989 1.01695 0.93066 1.20167 0.89954 0.81841 0.76680 1.90753 1.61641 1.42491 1.49856 1.45740 1.08026 1.18600 1.63519 1.20708 0.80480 0.94651 1.00641 1.22539 0.94469 0.94560 1.01304 0.85811 1.23633 1.04298 0.91528 0.96730 0.85233 1.22715 0.92606 0.94985 0.96350 1.66174 1.42948 1.00857 1.13850 1.21890 0.94096 0.95953 0.96587 1.20815 0.90815 0.82458 0.83073 1.90487 1.38853 1.51551 1.69442 1.41920 1.15320 1.25952 1.38113 1.19611 0.94105 1.11707 1.20955 0.90515 1.25993 1.01477 0.95228 0.98418 1.69661 1.30282 1.17372 1.38774 0.85016 0.77619 0.77901 0.77959 1.19858 1.19389 1.19798 1.23134 1.00547 0.88239 0.94027 1.23314 0.95559 1.00609 0.98709 0.86603 0.88981 0.88821 0.87201 0.89200 0.89235 0.92473 0.74338 0.91329 0.91610 0.88695 0.91758 0.87177 0.90931 0.77016 0.91325 0.92989 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.45 113.37 1.19 0.42 16 2 S -0.28 -4.52 21.10 -56.49 -1.19 -5.71 16 3 C -0.08 -0.86 3.17 29.85 0.09 -0.76 16 4 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 5 C -0.14 -1.00 9.08 71.98 0.65 -0.35 16 6 C 0.53 9.34 6.95 87.66 0.61 9.95 16 7 O -0.57 -15.96 16.14 -3.05 -0.05 -16.01 16 8 N -0.71 -8.63 5.56 -463.05 -2.57 -11.20 16 9 C 0.16 2.47 5.95 86.38 0.51 2.98 16 10 C -0.11 -1.64 5.38 -10.79 -0.06 -1.69 16 11 H 0.12 1.49 8.04 -2.39 -0.02 1.47 16 12 C -0.14 -2.59 6.73 -9.90 -0.07 -2.65 16 13 H 0.13 2.11 8.12 -2.39 -0.02 2.09 16 14 C 0.06 1.26 6.27 86.45 0.54 1.81 16 15 N -0.51 -16.16 5.03 -875.67 -4.40 -20.57 16 16 C 0.05 1.57 5.32 85.55 0.46 2.02 16 17 C 0.44 21.08 7.63 87.66 0.67 21.75 16 18 O -0.62 -34.71 14.90 -3.05 -0.05 -34.76 16 19 N -0.58 -29.53 5.29 -306.99 -1.62 -31.16 16 20 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 23 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 24 Si 0.99 43.05 29.55 68.60 2.03 45.07 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 28 C 0.07 2.03 5.91 85.73 0.51 2.53 16 29 C -0.16 -3.63 6.75 -9.90 -0.07 -3.70 16 30 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.09 0.34 7.14 -2.39 -0.02 0.32 16 33 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.09 0.31 6.92 -2.39 -0.02 0.29 16 35 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.42 2.29 8.40 -92.71 -0.78 1.52 16 38 H 0.07 1.19 7.94 -2.39 -0.02 1.17 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 1.09 8.00 -2.39 -0.02 1.07 16 42 H 0.11 3.24 8.08 -2.39 -0.02 3.22 16 43 H 0.07 2.12 7.80 -2.39 -0.02 2.10 16 44 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 45 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 46 H 0.05 1.43 7.80 -2.39 -0.02 1.41 16 47 H 0.06 2.35 7.41 -2.39 -0.02 2.34 16 Total: -1.00 -78.61 400.88 -1.78 -80.38 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: -0.52 Total: 29.16 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 6.32 Total: 13.90 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -8.31 Total: -112.04 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -0.09 Total: -50.77 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -4.52 SS G_CDS: -1.19 Total: -5.71 kcal Total: -78.61 -1.78 -80.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649473407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.970 kcal (2) G-P(sol) polarization free energy of solvation -78.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds