Wall clock time and date at job start Wed Apr 1 2020 00:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35852 * 116.99889 * 2 1 4 4 C 1.38176 * 120.12021 * 0.25237 * 3 2 1 5 5 C 1.39743 * 119.80749 * 180.22799 * 4 3 2 6 6 C 1.43201 * 119.98336 * 179.74569 * 5 4 3 7 7 N 5.84003 * 81.33462 * 0.02562 * 2 1 3 8 8 C 1.39840 * 120.03934 * 359.77372 * 5 4 3 9 9 C 1.36560 * 120.23574 * 359.97438 * 8 5 4 10 10 C 1.39705 * 120.19308 * 359.97438 * 9 8 5 11 11 C 1.47605 * 120.02138 * 179.97438 * 10 9 8 12 12 N 1.31372 * 126.47837 * 132.97387 * 11 10 9 13 13 N 1.28508 * 109.91811 * 179.97438 * 12 11 10 14 14 C 1.31431 * 110.09368 * 0.02562 * 13 12 11 15 15 N 1.38346 * 126.36461 * 179.97438 * 14 13 12 16 16 C 1.46892 * 111.00313 * 236.06859 * 15 14 13 17 17 C 1.46903 * 110.99929 * 0.02752 * 15 14 13 18 18 H 1.08994 * 109.47307 * 54.99653 * 17 15 14 19 19 C 1.53001 * 109.46930 * 294.99671 * 17 15 14 20 20 C 1.50700 * 109.47183 * 174.99752 * 17 15 14 21 21 H 1.07997 * 119.99996 * 0.02562 * 20 17 15 22 22 C 1.37880 * 119.99971 * 179.97438 * 20 17 15 23 23 N 1.31508 * 120.00020 * 0.02562 * 22 20 17 24 24 Si 1.86798 * 119.99822 * 179.97438 * 22 20 17 25 25 H 1.48502 * 109.47443 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47151 * 120.00599 * 24 22 20 27 27 H 1.48502 * 109.47197 * 240.00367 * 24 22 20 28 28 N 1.36467 * 107.27450 * 359.76832 * 14 13 12 29 29 C 1.46495 * 127.16327 * 180.24770 * 28 14 13 30 30 H 1.09005 * 109.47224 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47408 * 300.00423 * 1 2 3 32 32 H 1.09001 * 109.46974 * 60.00224 * 1 2 3 33 33 H 1.08001 * 120.09998 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.88675 * 180.02562 * 8 5 4 35 35 H 1.07997 * 119.90538 * 180.02562 * 9 8 5 36 36 H 1.09003 * 109.47266 * 60.00299 * 16 15 14 37 37 H 1.09000 * 109.47602 * 179.97438 * 16 15 14 38 38 H 1.09000 * 109.47697 * 300.00294 * 16 15 14 39 39 H 1.09001 * 109.47073 * 60.00051 * 19 17 15 40 40 H 1.08999 * 109.47039 * 180.02562 * 19 17 15 41 41 H 1.09008 * 109.47123 * 300.00181 * 19 17 15 42 42 H 0.96997 * 120.00401 * 179.97438 * 23 22 20 43 43 H 1.09002 * 109.47174 * 270.83222 * 29 28 14 44 44 H 1.09003 * 109.47653 * 30.83481 * 29 28 14 45 45 H 1.09003 * 109.47397 * 150.83541 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 1.2956 2.3709 0.0053 5 6 1.9367 3.6125 0.0004 6 6 1.1630 4.8175 0.0003 7 7 0.5491 5.7734 0.0026 8 6 3.3335 3.6791 -0.0050 9 6 4.0766 2.5333 -0.0050 10 6 3.4458 1.2868 0.0009 11 6 4.2526 0.0508 0.0003 12 7 4.0801 -0.9949 0.7766 13 7 4.9609 -1.8908 0.5065 14 6 5.7498 -1.4721 -0.4578 15 7 6.8109 -2.1674 -1.0097 16 6 8.0535 -1.3890 -0.9209 17 6 6.9666 -3.4822 -0.3734 18 1 6.0267 -4.0303 -0.4371 19 6 7.3495 -3.2955 1.0961 20 6 8.0489 -4.2572 -1.0799 21 1 8.5693 -3.8169 -1.9175 22 6 8.3754 -5.5280 -0.6562 23 7 7.7421 -6.0640 0.3641 24 14 9.7164 -6.4889 -1.5324 25 1 10.2697 -5.6691 -2.6402 26 1 10.7996 -6.8164 -0.5708 27 1 9.1465 -7.7450 -2.0826 28 7 5.3247 -0.2260 -0.8168 29 6 5.8929 0.6380 -1.8545 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2168 2.3185 0.0098 34 1 3.8265 4.6400 -0.0083 35 1 5.1550 2.5910 -0.0087 36 1 8.2781 -1.1813 0.1253 37 1 8.8716 -1.9589 -1.3614 38 1 7.9331 -0.4494 -1.4601 39 1 6.5667 -2.7349 1.6072 40 1 7.4655 -4.2711 1.5682 41 1 8.2896 -2.7473 1.1599 42 1 7.9715 -6.9582 0.6620 43 1 6.6780 1.2579 -1.4215 44 1 6.3131 0.0225 -2.6500 45 1 5.1103 1.2767 -2.2642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650274930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:30 Heat of formation + Delta-G solvation = 130.769802 kcal Electronic energy + Delta-G solvation = -29345.066614 eV Core-core repulsion = 25366.117624 eV Total energy + Delta-G solvation = -3978.948989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.43973 -40.52352 -38.16374 -37.39754 -36.63303 -34.72410 -33.02030 -32.25959 -30.84684 -29.08795 -28.64040 -27.66201 -27.56791 -25.45656 -25.20550 -24.29942 -22.69917 -21.66303 -20.83821 -19.82145 -19.47202 -17.29687 -16.97147 -16.48718 -16.41241 -16.08573 -15.80959 -15.67237 -15.30650 -14.63571 -14.57329 -14.32232 -14.27254 -14.02656 -13.70299 -13.42860 -13.26320 -13.09660 -12.89859 -12.75914 -12.58527 -12.37913 -11.97753 -11.62600 -11.52511 -11.38793 -11.38145 -11.13428 -10.95373 -10.78439 -10.58830 -10.26671 -10.09970 -9.93517 -9.80857 -9.48125 -9.07012 -8.91022 -8.56910 -8.40637 -7.32569 -6.05702 -4.13137 0.12127 0.95150 2.08089 2.24200 2.48149 2.69904 2.96142 3.26810 3.32301 3.34897 3.37408 3.39822 3.51450 4.17904 4.31658 4.31945 4.57877 4.58769 4.65856 4.75522 4.91671 4.93635 5.02450 5.07646 5.18644 5.25919 5.32644 5.36278 5.49530 5.59207 5.64275 5.78291 5.84270 5.97013 6.06086 6.17778 6.28841 6.43536 6.76745 6.89109 7.03684 7.06667 7.07192 7.18495 7.43609 7.61402 7.71526 7.94563 8.25439 8.40728 8.88481 9.31547 9.51560 11.00667 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024281 B = 0.002534 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.881293 B =11044.917979 C =11739.644950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.285 6.285 3 C 0.164 3.836 4 C -0.162 4.162 5 C 0.014 3.986 6 C 0.257 3.743 7 N -0.414 5.414 8 C -0.104 4.104 9 C -0.067 4.067 10 C 0.004 3.996 11 C 0.171 3.829 12 N -0.243 5.243 13 N -0.314 5.314 14 C 0.396 3.604 15 N -0.450 5.450 16 C 0.029 3.971 17 C 0.228 3.772 18 H 0.056 0.944 19 C -0.172 4.172 20 C -0.515 4.515 21 H 0.064 0.936 22 C 0.063 3.937 23 N -0.883 5.883 24 Si 0.900 3.100 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 N -0.488 5.488 29 C 0.077 3.923 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.036 0.964 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.038 0.962 40 H 0.091 0.909 41 H 0.022 0.978 42 H 0.262 0.738 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.671 18.657 -3.085 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.196 6.196 3 C 0.116 3.884 4 C -0.183 4.183 5 C 0.010 3.990 6 C -0.059 4.059 7 N -0.089 5.089 8 C -0.125 4.125 9 C -0.087 4.087 10 C 0.000 4.000 11 C -0.093 4.093 12 N -0.084 5.084 13 N -0.160 5.160 14 C 0.042 3.958 15 N -0.173 5.173 16 C -0.118 4.118 17 C 0.124 3.876 18 H 0.074 0.926 19 C -0.231 4.231 20 C -0.554 4.554 21 H 0.082 0.918 22 C -0.139 4.139 23 N -0.521 5.521 24 Si 0.727 3.273 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.210 1.210 28 N -0.185 5.185 29 C -0.066 4.066 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.055 0.945 37 H 0.115 0.885 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.110 0.890 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.114 0.886 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.173 18.711 -2.445 21.437 hybrid contribution 1.430 0.055 -0.810 1.644 sum -8.743 18.766 -3.255 20.957 Atomic orbital electron populations 1.23195 0.78134 1.04806 1.01181 1.86373 1.21271 1.24831 1.87108 1.18697 0.90731 0.84778 0.94223 1.21139 1.00605 0.90178 1.06379 1.15792 0.91724 0.86662 1.04855 1.25646 0.93423 0.92939 0.93864 1.81275 1.08547 1.10652 1.08447 1.20652 0.91223 0.99275 1.01338 1.20728 1.00560 0.89723 0.97689 1.16943 0.88557 0.89677 1.04854 1.21880 0.92941 0.97602 0.96861 1.74438 1.17095 0.97022 1.19851 1.74961 1.06247 1.22085 1.12702 1.23312 0.98156 0.82547 0.91829 1.59215 1.00870 1.05444 1.51781 1.22470 0.92085 0.96697 1.00555 1.19411 0.98771 0.79611 0.89819 0.92594 1.22414 0.97661 1.03369 0.99681 1.21053 1.19033 0.99782 1.15484 0.91751 1.24898 0.96626 0.97347 0.95058 1.69924 1.41017 1.15748 1.25365 0.86423 0.81449 0.79938 0.79447 1.19766 1.21055 1.20958 1.46091 1.26040 1.15515 1.30893 1.22079 0.99502 0.94625 0.90383 0.87628 0.92290 0.92585 0.83898 0.84302 0.84160 0.94546 0.88511 0.93188 0.94307 0.89007 0.95944 0.92772 0.90664 0.88629 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.16 16 2 O -0.28 -3.53 9.69 -19.28 -0.19 -3.72 16 3 C 0.16 1.79 6.69 -38.86 -0.26 1.53 16 4 C -0.16 -1.30 8.74 -39.04 -0.34 -1.64 16 5 C 0.01 0.10 5.74 -106.81 -0.61 -0.51 16 6 C 0.26 2.27 15.32 -22.47 -0.34 1.93 16 7 N -0.41 -4.58 18.54 41.84 0.78 -3.81 16 8 C -0.10 -0.69 9.68 -39.59 -0.38 -1.07 16 9 C -0.07 -0.55 8.78 -39.64 -0.35 -0.90 16 10 C 0.00 0.05 5.56 -104.79 -0.58 -0.54 16 11 C 0.17 2.75 7.07 -153.74 -1.09 1.66 16 12 N -0.24 -4.94 11.91 32.56 0.39 -4.55 16 13 N -0.31 -7.09 9.28 30.31 0.28 -6.81 16 14 C 0.40 7.98 6.74 -318.93 -2.15 5.83 16 15 N -0.45 -9.44 4.80 -176.10 -0.84 -10.28 16 16 C 0.03 0.50 8.60 60.06 0.52 1.02 16 17 C 0.23 5.71 2.03 -68.86 -0.14 5.57 16 18 H 0.06 1.62 7.95 -51.93 -0.41 1.20 16 19 C -0.17 -4.27 8.26 37.16 0.31 -3.96 16 20 C -0.51 -13.46 7.89 -34.44 -0.27 -13.73 16 21 H 0.06 1.63 6.77 -52.49 -0.36 1.28 16 22 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 23 N -0.88 -24.81 11.32 55.43 0.63 -24.18 16 24 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 N -0.49 -7.62 3.23 -122.11 -0.39 -8.02 16 29 C 0.08 0.78 8.49 59.84 0.51 1.29 16 30 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 32 H 0.06 0.31 7.67 -51.93 -0.40 -0.08 16 33 H 0.14 0.85 6.30 -52.49 -0.33 0.52 16 34 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 35 H 0.14 0.92 7.69 -52.49 -0.40 0.52 16 36 H 0.04 0.65 6.51 -51.93 -0.34 0.31 16 37 H 0.10 1.74 6.41 -51.93 -0.33 1.41 16 38 H 0.05 0.66 5.41 -51.93 -0.28 0.38 16 39 H 0.04 0.95 5.87 -51.93 -0.30 0.65 16 40 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 41 H 0.02 0.51 6.48 -51.92 -0.34 0.18 16 42 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.07 0.58 7.80 -51.93 -0.41 0.17 16 44 H 0.10 0.99 7.64 -51.93 -0.40 0.60 16 45 H 0.08 0.65 7.59 -51.93 -0.39 0.26 16 LS Contribution 372.64 15.07 5.62 5.62 Total: -1.00 -33.73 372.64 -8.43 -42.16 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.38 Total: -1.19 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -4.29 Total: -0.76 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.83 Total: -57.65 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: -0.19 Total: -3.72 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.73 -8.43 -42.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650274930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.930 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds