Wall clock time and date at job start Wed Apr 1 2020 00:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35852 * 116.99889 * 2 1 4 4 C 1.38176 * 120.12021 * 0.25237 * 3 2 1 5 5 C 1.39743 * 119.80749 * 180.22799 * 4 3 2 6 6 C 1.43201 * 119.98336 * 179.74569 * 5 4 3 7 7 N 5.84003 * 81.33462 * 0.02562 * 2 1 3 8 8 C 1.39840 * 120.03934 * 359.77372 * 5 4 3 9 9 C 1.36560 * 120.23574 * 359.97438 * 8 5 4 10 10 C 1.39705 * 120.19308 * 359.97438 * 9 8 5 11 11 C 1.47605 * 120.02138 * 179.97438 * 10 9 8 12 12 N 1.31372 * 126.47837 * 132.97387 * 11 10 9 13 13 N 1.28508 * 109.91811 * 179.97438 * 12 11 10 14 14 C 1.31431 * 110.09368 * 0.02562 * 13 12 11 15 15 N 1.38346 * 126.36461 * 179.97438 * 14 13 12 16 16 C 1.46892 * 111.00313 * 236.06859 * 15 14 13 17 17 C 1.46903 * 110.99929 * 0.02752 * 15 14 13 18 18 H 1.08994 * 109.47307 * 54.99653 * 17 15 14 19 19 C 1.53001 * 109.46930 * 294.99671 * 17 15 14 20 20 C 1.50700 * 109.47183 * 174.99752 * 17 15 14 21 21 H 1.07997 * 119.99996 * 0.02562 * 20 17 15 22 22 C 1.37880 * 119.99971 * 179.97438 * 20 17 15 23 23 N 1.31508 * 120.00020 * 0.02562 * 22 20 17 24 24 Si 1.86798 * 119.99822 * 179.97438 * 22 20 17 25 25 H 1.48502 * 109.47443 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47151 * 120.00599 * 24 22 20 27 27 H 1.48502 * 109.47197 * 240.00367 * 24 22 20 28 28 N 1.36467 * 107.27450 * 359.76832 * 14 13 12 29 29 C 1.46495 * 127.16327 * 180.24770 * 28 14 13 30 30 H 1.09005 * 109.47224 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47408 * 300.00423 * 1 2 3 32 32 H 1.09001 * 109.46974 * 60.00224 * 1 2 3 33 33 H 1.08001 * 120.09998 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.88675 * 180.02562 * 8 5 4 35 35 H 1.07997 * 119.90538 * 180.02562 * 9 8 5 36 36 H 1.09003 * 109.47266 * 60.00299 * 16 15 14 37 37 H 1.09000 * 109.47602 * 179.97438 * 16 15 14 38 38 H 1.09000 * 109.47697 * 300.00294 * 16 15 14 39 39 H 1.09001 * 109.47073 * 60.00051 * 19 17 15 40 40 H 1.08999 * 109.47039 * 180.02562 * 19 17 15 41 41 H 1.09008 * 109.47123 * 300.00181 * 19 17 15 42 42 H 0.96997 * 120.00401 * 179.97438 * 23 22 20 43 43 H 1.09002 * 109.47174 * 270.83222 * 29 28 14 44 44 H 1.09003 * 109.47653 * 30.83481 * 29 28 14 45 45 H 1.09003 * 109.47397 * 150.83541 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 1.2956 2.3709 0.0053 5 6 1.9367 3.6125 0.0004 6 6 1.1630 4.8175 0.0003 7 7 0.5491 5.7734 0.0026 8 6 3.3335 3.6791 -0.0050 9 6 4.0766 2.5333 -0.0050 10 6 3.4458 1.2868 0.0009 11 6 4.2526 0.0508 0.0003 12 7 4.0801 -0.9949 0.7766 13 7 4.9609 -1.8908 0.5065 14 6 5.7498 -1.4721 -0.4578 15 7 6.8109 -2.1674 -1.0097 16 6 8.0535 -1.3890 -0.9209 17 6 6.9666 -3.4822 -0.3734 18 1 6.0267 -4.0303 -0.4371 19 6 7.3495 -3.2955 1.0961 20 6 8.0489 -4.2572 -1.0799 21 1 8.5693 -3.8169 -1.9175 22 6 8.3754 -5.5280 -0.6562 23 7 7.7421 -6.0640 0.3641 24 14 9.7164 -6.4889 -1.5324 25 1 10.2697 -5.6691 -2.6402 26 1 10.7996 -6.8164 -0.5708 27 1 9.1465 -7.7450 -2.0826 28 7 5.3247 -0.2260 -0.8168 29 6 5.8929 0.6380 -1.8545 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2168 2.3185 0.0098 34 1 3.8265 4.6400 -0.0083 35 1 5.1550 2.5910 -0.0087 36 1 8.2781 -1.1813 0.1253 37 1 8.8716 -1.9589 -1.3614 38 1 7.9331 -0.4494 -1.4601 39 1 6.5667 -2.7349 1.6072 40 1 7.4655 -4.2711 1.5682 41 1 8.2896 -2.7473 1.1599 42 1 7.9715 -6.9582 0.6620 43 1 6.6780 1.2579 -1.4215 44 1 6.3131 0.0225 -2.6500 45 1 5.1103 1.2767 -2.2642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650274930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:29 Heat of formation + Delta-G solvation = 110.587534 kcal Electronic energy + Delta-G solvation = -29345.941783 eV Core-core repulsion = 25366.117624 eV Total energy + Delta-G solvation = -3979.824158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.77961 -41.27405 -39.05424 -38.88371 -37.42107 -35.95832 -34.79170 -33.31473 -31.52797 -30.78871 -30.06910 -28.61041 -28.27496 -27.27223 -26.73035 -25.35595 -23.61579 -23.05363 -21.99621 -21.07320 -20.50865 -18.38643 -18.20633 -17.78678 -17.41132 -17.27163 -16.90423 -16.73594 -16.66162 -16.25293 -15.51813 -15.24924 -15.07186 -15.01656 -14.90542 -14.51746 -14.46740 -14.19004 -13.85630 -13.83910 -13.46735 -13.34125 -13.28807 -13.01876 -12.88812 -12.67965 -12.59694 -12.46034 -12.33953 -12.16019 -12.06259 -12.00682 -11.94922 -11.40927 -11.07819 -10.84533 -10.69675 -10.49759 -10.07835 -9.42363 -8.80920 -8.09576 -6.24488 -0.62226 0.31781 0.89991 1.34356 1.46708 1.48415 1.54159 1.60060 1.75194 2.07384 2.30516 2.44412 2.67778 2.76184 3.04506 3.20287 3.32189 3.67069 3.83523 3.99681 4.03123 4.15243 4.27933 4.32791 4.38551 4.41866 4.44314 4.55427 4.58703 4.60765 4.73120 4.77284 4.79388 4.91143 5.00205 5.05193 5.13003 5.15744 5.18749 5.23596 5.49378 5.51597 5.63942 5.65426 5.89619 6.09252 6.24587 6.34772 6.37724 6.62030 6.85454 7.44298 7.92345 8.97343 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024281 B = 0.002534 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.881293 B =11044.917979 C =11739.644950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.153 3.847 4 C -0.151 4.151 5 C 0.024 3.976 6 C 0.281 3.719 7 N -0.450 5.450 8 C -0.086 4.086 9 C -0.051 4.051 10 C -0.031 4.031 11 C 0.205 3.795 12 N -0.298 5.298 13 N -0.367 5.367 14 C 0.374 3.626 15 N -0.455 5.455 16 C 0.031 3.969 17 C 0.241 3.759 18 H 0.003 0.997 19 C -0.153 4.153 20 C -0.522 4.522 21 H 0.073 0.927 22 C 0.010 3.990 23 N -0.919 5.919 24 Si 0.970 3.030 25 H -0.258 1.258 26 H -0.281 1.281 27 H -0.286 1.286 28 N -0.478 5.478 29 C 0.062 3.938 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.163 0.837 34 H 0.173 0.827 35 H 0.162 0.838 36 H 0.027 0.973 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.033 0.967 40 H 0.061 0.939 41 H 0.032 0.968 42 H 0.262 0.738 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.953 22.329 -4.766 24.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.105 3.895 4 C -0.172 4.172 5 C 0.020 3.980 6 C -0.034 4.034 7 N -0.126 5.126 8 C -0.106 4.106 9 C -0.070 4.070 10 C -0.036 4.036 11 C -0.061 4.061 12 N -0.137 5.137 13 N -0.212 5.212 14 C 0.017 3.983 15 N -0.177 5.177 16 C -0.116 4.116 17 C 0.135 3.865 18 H 0.021 0.979 19 C -0.212 4.212 20 C -0.560 4.560 21 H 0.092 0.908 22 C -0.189 4.189 23 N -0.558 5.558 24 Si 0.795 3.205 25 H -0.182 1.182 26 H -0.207 1.207 27 H -0.212 1.212 28 N -0.174 5.174 29 C -0.078 4.078 30 H 0.122 0.878 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.180 0.820 34 H 0.191 0.809 35 H 0.180 0.820 36 H 0.045 0.955 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.127 0.873 44 H 0.112 0.888 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.462 22.432 -4.146 24.696 hybrid contribution 1.027 -0.871 -0.290 1.378 sum -8.435 21.561 -4.436 23.573 Atomic orbital electron populations 1.23422 0.76207 1.05414 1.02954 1.86324 1.23585 1.26299 1.87506 1.18840 0.90661 0.85156 0.94866 1.21237 1.01485 0.89278 1.05209 1.15854 0.92216 0.85857 1.04119 1.25608 0.92559 0.92468 0.92726 1.81325 1.09645 1.11913 1.09680 1.20953 0.90537 1.00107 0.99045 1.20903 1.01670 0.88379 0.96094 1.17188 0.88738 0.89117 1.08526 1.22629 0.91676 0.97568 0.94219 1.74324 1.18263 0.98602 1.22547 1.74780 1.07546 1.24176 1.14729 1.23109 0.98091 0.84441 0.92653 1.59094 1.02547 1.04563 1.51521 1.22567 0.90301 0.98081 1.00623 1.18929 0.95832 0.81720 0.90047 0.97925 1.22172 0.97858 1.01519 0.99677 1.21355 1.18969 1.00119 1.15558 0.90847 1.25802 0.98925 0.98472 0.95719 1.70093 1.42708 1.16036 1.26976 0.85331 0.78430 0.78214 0.78554 1.18176 1.20722 1.21201 1.46297 1.25589 1.14307 1.31249 1.22582 1.01469 0.94474 0.89289 0.87833 0.90709 0.90468 0.81953 0.80936 0.82013 0.95467 0.89248 0.88608 0.94796 0.92023 0.94910 0.92888 0.87277 0.88756 0.86654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.32 16 2 O -0.32 -8.07 9.69 -91.89 -0.89 -8.96 16 3 C 0.15 3.10 6.69 22.74 0.15 3.25 16 4 C -0.15 -1.98 8.74 22.62 0.20 -1.78 16 5 C 0.02 0.26 5.74 -21.28 -0.12 0.14 16 6 C 0.28 3.99 15.32 88.33 1.35 5.34 16 7 N -0.45 -8.76 18.54 19.00 0.35 -8.41 16 8 C -0.09 -0.71 9.68 22.27 0.22 -0.50 16 9 C -0.05 -0.62 8.78 22.23 0.20 -0.42 16 10 C -0.03 -0.68 5.56 -19.97 -0.11 -0.79 16 11 C 0.21 6.53 7.07 136.09 0.96 7.49 16 12 N -0.30 -12.65 11.91 -50.90 -0.61 -13.26 16 13 N -0.37 -17.59 9.28 -58.03 -0.54 -18.12 16 14 C 0.37 15.44 6.74 260.13 1.75 17.19 16 15 N -0.45 -19.42 4.80 -711.06 -3.41 -22.83 16 16 C 0.03 1.03 8.60 127.69 1.10 2.13 16 17 C 0.24 12.67 2.03 44.17 0.09 12.76 16 18 H 0.00 0.17 7.95 -2.39 -0.02 0.15 16 19 C -0.15 -8.00 8.26 71.98 0.59 -7.41 16 20 C -0.52 -27.89 7.89 25.60 0.20 -27.68 16 21 H 0.07 3.71 6.77 -2.91 -0.02 3.69 16 22 C 0.01 0.55 5.30 84.66 0.45 1.00 16 23 N -0.92 -53.92 11.32 21.45 0.24 -53.67 16 24 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 25 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 27 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 28 N -0.48 -14.42 3.23 -540.26 -1.75 -16.17 16 29 C 0.06 1.04 8.49 127.77 1.09 2.12 16 30 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.07 0.80 7.65 -2.39 -0.02 0.78 16 32 H 0.08 0.74 7.67 -2.39 -0.02 0.72 16 33 H 0.16 1.43 6.30 -2.91 -0.02 1.42 16 34 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 35 H 0.16 1.28 7.69 -2.91 -0.02 1.26 16 36 H 0.03 0.95 6.51 -2.39 -0.02 0.93 16 37 H 0.09 3.12 6.41 -2.39 -0.02 3.11 16 38 H 0.10 2.27 5.41 -2.39 -0.01 2.26 16 39 H 0.03 1.77 5.87 -2.39 -0.01 1.76 16 40 H 0.06 3.58 6.07 -2.39 -0.01 3.56 16 41 H 0.03 1.57 6.48 -2.38 -0.02 1.56 16 42 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 43 H 0.11 1.12 7.80 -2.39 -0.02 1.10 16 44 H 0.09 1.66 7.64 -2.39 -0.02 1.64 16 45 H 0.12 1.26 7.59 -2.39 -0.02 1.24 16 Total: -1.00 -80.79 372.64 5.71 -75.09 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.05 Total: 7.55 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 9.23 Total: 14.15 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -5.71 Total: -132.46 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.89 Total: -8.96 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -80.79 5.71 -75.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650274930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.675 kcal (2) G-P(sol) polarization free energy of solvation -80.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds