Wall clock time and date at job start Wed Apr 1 2020 00:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46495 * 109.47342 * 2 1 4 4 C 1.37552 * 127.17057 * 92.59039 * 3 2 1 5 5 C 1.47877 * 126.46476 * 0.02562 * 4 3 2 6 6 C 1.39948 * 120.02386 * 341.09799 * 5 4 3 7 7 C 1.38337 * 120.35254 * 179.97438 * 6 5 4 8 8 C 1.37748 * 120.40635 * 359.97438 * 7 6 5 9 9 C 1.40789 * 120.03432 * 0.02562 * 8 7 6 10 10 C 1.41435 * 120.17312 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99469 * 150.15601 * 10 9 8 12 12 C 1.39920 * 119.99981 * 330.15596 * 10 9 8 13 13 N 1.30834 * 119.99520 * 165.58763 * 12 10 9 14 14 Si 1.86796 * 120.00128 * 345.58453 * 12 10 9 15 15 H 1.48507 * 109.46987 * 93.38661 * 14 12 10 16 16 H 1.48498 * 109.47114 * 213.38491 * 14 12 10 17 17 H 1.48499 * 109.47117 * 333.38883 * 14 12 10 18 18 C 1.38972 * 120.02012 * 160.81809 * 5 4 3 19 19 N 1.31249 * 107.06379 * 180.26124 * 4 3 2 20 20 N 1.28514 * 109.93355 * 359.73862 * 19 4 3 21 21 C 1.31381 * 110.07816 * 0.02562 * 20 19 4 22 22 N 1.38403 * 126.37533 * 180.02562 * 21 20 19 23 23 C 1.47195 * 110.99433 * 291.86045 * 22 21 20 24 24 C 1.52977 * 108.73148 * 54.36843 * 23 22 21 25 25 N 1.46002 * 110.04495 * 50.28989 * 24 23 22 26 26 C 1.33719 * 122.92658 * 341.83644 * 25 24 23 27 27 O 1.21281 * 118.62438 * 181.68598 * 26 25 24 28 28 C 1.46897 * 111.00006 * 54.74936 * 22 21 20 29 29 H 1.08997 * 109.47761 * 186.20876 * 1 2 3 30 30 H 1.09002 * 109.47243 * 306.20724 * 1 2 3 31 31 H 1.09007 * 109.46998 * 66.20700 * 1 2 3 32 32 H 1.09000 * 109.47420 * 239.99216 * 2 1 3 33 33 H 1.09001 * 109.46752 * 119.99862 * 2 1 3 34 34 H 1.07995 * 119.82644 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.79673 * 180.02562 * 7 6 5 36 36 H 1.08004 * 119.98514 * 180.02562 * 8 7 6 37 37 H 0.96999 * 119.99797 * 179.97438 * 13 12 10 38 38 H 1.07995 * 120.19499 * 0.02562 * 18 5 4 39 39 H 1.09004 * 109.58796 * 174.14328 * 23 22 21 40 40 H 1.08998 * 109.59183 * 294.58986 * 23 22 21 41 41 H 1.09000 * 109.37655 * 170.46822 * 24 23 22 42 42 H 1.09009 * 109.37585 * 290.22794 * 24 23 22 43 43 H 0.96999 * 118.53836 * 161.86238 * 25 24 23 44 44 H 1.09001 * 109.38674 * 47.08703 * 28 22 21 45 45 H 1.08997 * 109.38491 * 166.78190 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3421 2.1482 1.0949 5 6 2.2641 1.7338 2.5123 6 6 1.4773 0.6360 2.8787 7 6 1.3999 0.2421 4.2026 8 6 2.0964 0.9252 5.1750 9 6 2.8930 2.0321 4.8251 10 6 3.6098 2.7353 5.8212 11 1 4.5400 3.2246 5.5729 12 6 3.1138 2.7969 7.1280 13 7 3.8899 3.1924 8.1043 14 14 1.3436 2.3146 7.4789 15 1 1.2884 0.8823 7.8672 16 1 0.8137 3.1487 8.5874 17 1 0.5214 2.5293 6.2611 18 6 2.9768 2.4308 3.4807 19 7 2.7283 3.3189 0.6445 20 7 2.6741 3.3339 -0.6394 21 6 2.2494 2.1738 -1.0866 22 7 2.0662 1.8224 -2.4127 23 6 0.9487 2.5732 -3.0076 24 6 1.1953 4.0686 -2.7992 25 7 2.5440 4.4188 -3.2350 26 6 3.5127 3.5121 -3.4009 27 8 4.6142 3.8933 -3.7360 28 6 3.2937 2.0406 -3.1895 29 1 -0.3634 -1.0216 0.1111 30 1 -0.3634 0.6071 0.8292 31 1 -0.3633 0.4146 -0.9404 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 0.9283 0.0928 2.1238 35 1 0.7903 -0.6067 4.4752 36 1 2.0314 0.6116 6.2065 37 1 3.5459 3.2355 9.0102 38 1 3.5884 3.2760 3.2017 39 1 0.8904 2.3575 -4.0745 40 1 0.0158 2.2855 -2.5228 41 1 0.4687 4.6390 -3.3778 42 1 1.0847 4.3094 -1.7418 43 1 2.7465 5.3508 -3.4118 44 1 4.1430 1.6224 -2.6492 45 1 3.2027 1.5458 -4.1564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650305477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:59 Heat of formation + Delta-G solvation = 92.890104 kcal Electronic energy + Delta-G solvation = -29990.222642 eV Core-core repulsion = 26009.631066 eV Total energy + Delta-G solvation = -3980.591576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.89062 -40.53111 -38.01304 -37.47276 -35.77654 -34.48253 -33.72518 -31.52331 -30.74314 -30.35560 -30.15710 -28.57673 -26.33087 -25.37744 -24.29510 -23.77545 -22.84259 -21.53345 -20.55579 -20.40869 -19.40548 -17.94240 -17.44426 -17.14634 -16.62156 -16.23375 -16.12323 -15.72675 -15.39216 -15.21466 -14.77608 -14.48390 -13.98482 -13.89238 -13.72369 -13.43512 -13.18062 -12.84947 -12.79551 -12.77848 -12.48377 -12.29003 -12.16864 -11.86464 -11.72615 -11.40515 -11.20802 -11.04254 -10.97973 -10.85178 -10.59415 -10.21870 -10.03264 -9.93402 -9.73577 -9.39947 -9.17942 -9.08404 -8.94001 -7.87169 -7.55535 -7.03344 -4.61199 1.43329 2.15957 2.38260 2.45793 2.53560 3.01356 3.05920 3.14726 3.20206 3.30198 3.50705 3.88808 4.19236 4.37607 4.43075 4.49760 4.60553 4.70641 4.79725 4.86803 4.95020 5.09888 5.16324 5.23264 5.26596 5.33926 5.36722 5.44781 5.56855 5.62484 5.78593 5.90924 6.02883 6.06104 6.14155 6.25847 6.51581 6.60561 6.66006 6.73950 6.91346 7.15553 7.17152 7.21133 7.35855 7.47560 7.69730 7.87215 8.08125 8.23635 8.46692 8.66213 8.90584 9.98727 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.003048 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.476098 B = 9184.518250 C =10028.033949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 N -0.456 5.456 4 C 0.263 3.737 5 C -0.003 4.003 6 C -0.244 4.244 7 C -0.074 4.074 8 C -0.229 4.229 9 C 0.089 3.911 10 C -0.437 4.437 11 H 0.094 0.906 12 C 0.081 3.919 13 N -0.804 5.804 14 Si 0.915 3.085 15 H -0.270 1.270 16 H -0.291 1.291 17 H -0.242 1.242 18 C -0.148 4.148 19 N -0.283 5.283 20 N -0.296 5.296 21 C 0.303 3.697 22 N -0.449 5.449 23 C 0.045 3.955 24 C 0.077 3.923 25 N -0.702 5.702 26 C 0.504 3.496 27 O -0.555 6.555 28 C 0.053 3.947 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.287 0.713 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.401 0.599 44 H 0.113 0.887 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.781 -6.606 -18.676 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.023 4.023 3 N -0.148 5.148 4 C -0.001 4.001 5 C -0.006 4.006 6 C -0.264 4.264 7 C -0.093 4.093 8 C -0.249 4.249 9 C 0.086 3.914 10 C -0.465 4.465 11 H 0.112 0.888 12 C -0.138 4.138 13 N -0.428 5.428 14 Si 0.742 3.258 15 H -0.196 1.196 16 H -0.219 1.219 17 H -0.166 1.166 18 C -0.169 4.169 19 N -0.124 5.124 20 N -0.141 5.141 21 C -0.053 4.053 22 N -0.174 5.174 23 C -0.082 4.082 24 C -0.049 4.049 25 N -0.354 5.354 26 C 0.289 3.711 27 O -0.433 6.433 28 C -0.077 4.077 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.134 0.866 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.237 0.763 44 H 0.131 0.869 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.780 -5.660 -18.612 21.774 hybrid contribution -1.028 -0.408 0.373 1.167 sum -10.808 -6.068 -18.240 22.053 Atomic orbital electron populations 1.22192 0.93934 1.03462 1.03108 1.22085 0.95796 0.78972 1.05404 1.46376 1.49214 1.13628 1.05550 1.23395 0.99118 0.87961 0.89615 1.17228 1.01135 0.97662 0.84530 1.20654 1.08001 1.01472 0.96300 1.20444 0.97908 0.98188 0.92739 1.21172 1.06215 0.99319 0.98170 1.17652 0.90648 0.90860 0.92268 1.19557 1.07466 1.27901 0.91604 0.88768 1.26186 1.00382 0.91928 0.95302 1.69664 1.37306 1.34303 1.01504 0.86276 0.82434 0.78106 0.79019 1.19620 1.21854 1.16566 1.21148 1.03133 1.00544 0.92092 1.74488 1.19351 1.16804 1.01719 1.74684 1.18125 1.16829 1.04506 1.22067 1.06763 0.88838 0.87594 1.59039 1.06317 1.55604 0.96405 1.22640 0.93835 0.90619 1.01130 1.22112 0.83859 0.96755 1.02210 1.45207 1.11174 1.10818 1.68179 1.20626 0.84210 0.89846 0.76438 1.90761 1.23217 1.80917 1.48358 1.22441 0.92392 0.92467 1.00425 0.90285 0.91153 0.91975 0.88576 0.87342 0.87524 0.88229 0.87877 0.90234 0.86632 0.88185 0.88251 0.90010 0.89889 0.76274 0.86867 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.43 37.15 0.35 -1.15 16 2 C 0.10 1.08 6.00 -4.05 -0.02 1.05 16 3 N -0.46 -6.71 2.83 -114.69 -0.32 -7.03 16 4 C 0.26 4.94 7.69 -153.78 -1.18 3.76 16 5 C 0.00 -0.05 5.86 -105.04 -0.62 -0.67 16 6 C -0.24 -4.43 8.65 -38.90 -0.34 -4.77 16 7 C -0.07 -1.43 10.01 -39.72 -0.40 -1.83 16 8 C -0.23 -5.12 7.04 -38.80 -0.27 -5.39 16 9 C 0.09 2.16 5.14 -106.87 -0.55 1.61 16 10 C -0.44 -11.49 9.59 -37.74 -0.36 -11.85 16 11 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 12 C 0.08 2.07 5.45 -17.35 -0.09 1.97 16 13 N -0.80 -20.93 13.93 55.55 0.77 -20.15 16 14 Si 0.91 19.97 24.41 -169.99 -4.15 15.82 16 15 H -0.27 -5.63 6.66 56.52 0.38 -5.26 16 16 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.24 -5.40 6.72 56.52 0.38 -5.02 16 18 C -0.15 -3.40 9.44 -38.46 -0.36 -3.77 16 19 N -0.28 -5.77 12.01 32.59 0.39 -5.38 16 20 N -0.30 -5.23 8.44 30.31 0.26 -4.97 16 21 C 0.30 4.33 5.98 -318.90 -1.91 2.42 16 22 N -0.45 -4.60 5.06 -175.92 -0.89 -5.49 16 23 C 0.05 0.34 6.02 -3.67 -0.02 0.32 16 24 C 0.08 0.68 6.38 -4.32 -0.03 0.65 16 25 N -0.70 -7.82 5.09 -61.07 -0.31 -8.13 16 26 C 0.50 6.73 6.75 -11.67 -0.08 6.66 16 27 O -0.56 -9.71 17.82 5.56 0.10 -9.61 16 28 C 0.05 0.56 5.84 -5.19 -0.03 0.53 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.77 7.14 -51.93 -0.37 0.40 16 31 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.11 1.24 5.86 -51.93 -0.30 0.93 16 34 H 0.11 1.57 3.33 -52.49 -0.17 1.39 16 35 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.10 2.30 4.39 -52.48 -0.23 2.07 16 37 H 0.29 6.74 8.30 -40.82 -0.34 6.41 16 38 H 0.12 2.73 7.97 -52.49 -0.42 2.31 16 39 H 0.10 0.50 8.08 -51.93 -0.42 0.08 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 1.01 6.32 -51.92 -0.33 0.68 16 43 H 0.40 4.25 8.84 -40.82 -0.36 3.89 16 44 H 0.11 1.35 8.01 -51.93 -0.42 0.93 16 45 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 358.55 15.07 5.40 5.40 Total: -1.00 -31.98 358.55 -10.25 -42.23 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.59 Total: 7.76 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -5.92 Total: -10.46 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.10 Total: -51.16 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.10 Total: -9.61 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.15 Total: 15.82 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.98 -10.25 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650305477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.124 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds