Wall clock time and date at job start Wed Apr 1 2020 00:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46495 * 109.47342 * 2 1 4 4 C 1.37552 * 127.17057 * 92.59039 * 3 2 1 5 5 C 1.47877 * 126.46476 * 0.02562 * 4 3 2 6 6 C 1.39948 * 120.02386 * 341.09799 * 5 4 3 7 7 C 1.38337 * 120.35254 * 179.97438 * 6 5 4 8 8 C 1.37748 * 120.40635 * 359.97438 * 7 6 5 9 9 C 1.40789 * 120.03432 * 0.02562 * 8 7 6 10 10 C 1.41435 * 120.17312 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99469 * 150.15601 * 10 9 8 12 12 C 1.39920 * 119.99981 * 330.15596 * 10 9 8 13 13 N 1.30834 * 119.99520 * 165.58763 * 12 10 9 14 14 Si 1.86796 * 120.00128 * 345.58453 * 12 10 9 15 15 H 1.48507 * 109.46987 * 93.38661 * 14 12 10 16 16 H 1.48498 * 109.47114 * 213.38491 * 14 12 10 17 17 H 1.48499 * 109.47117 * 333.38883 * 14 12 10 18 18 C 1.38972 * 120.02012 * 160.81809 * 5 4 3 19 19 N 1.31249 * 107.06379 * 180.26124 * 4 3 2 20 20 N 1.28514 * 109.93355 * 359.73862 * 19 4 3 21 21 C 1.31381 * 110.07816 * 0.02562 * 20 19 4 22 22 N 1.38403 * 126.37533 * 180.02562 * 21 20 19 23 23 C 1.47195 * 110.99433 * 291.86045 * 22 21 20 24 24 C 1.52977 * 108.73148 * 54.36843 * 23 22 21 25 25 N 1.46002 * 110.04495 * 50.28989 * 24 23 22 26 26 C 1.33719 * 122.92658 * 341.83644 * 25 24 23 27 27 O 1.21281 * 118.62438 * 181.68598 * 26 25 24 28 28 C 1.46897 * 111.00006 * 54.74936 * 22 21 20 29 29 H 1.08997 * 109.47761 * 186.20876 * 1 2 3 30 30 H 1.09002 * 109.47243 * 306.20724 * 1 2 3 31 31 H 1.09007 * 109.46998 * 66.20700 * 1 2 3 32 32 H 1.09000 * 109.47420 * 239.99216 * 2 1 3 33 33 H 1.09001 * 109.46752 * 119.99862 * 2 1 3 34 34 H 1.07995 * 119.82644 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.79673 * 180.02562 * 7 6 5 36 36 H 1.08004 * 119.98514 * 180.02562 * 8 7 6 37 37 H 0.96999 * 119.99797 * 179.97438 * 13 12 10 38 38 H 1.07995 * 120.19499 * 0.02562 * 18 5 4 39 39 H 1.09004 * 109.58796 * 174.14328 * 23 22 21 40 40 H 1.08998 * 109.59183 * 294.58986 * 23 22 21 41 41 H 1.09000 * 109.37655 * 170.46822 * 24 23 22 42 42 H 1.09009 * 109.37585 * 290.22794 * 24 23 22 43 43 H 0.96999 * 118.53836 * 161.86238 * 25 24 23 44 44 H 1.09001 * 109.38674 * 47.08703 * 28 22 21 45 45 H 1.08997 * 109.38491 * 166.78190 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3421 2.1482 1.0949 5 6 2.2641 1.7338 2.5123 6 6 1.4773 0.6360 2.8787 7 6 1.3999 0.2421 4.2026 8 6 2.0964 0.9252 5.1750 9 6 2.8930 2.0321 4.8251 10 6 3.6098 2.7353 5.8212 11 1 4.5400 3.2246 5.5729 12 6 3.1138 2.7969 7.1280 13 7 3.8899 3.1924 8.1043 14 14 1.3436 2.3146 7.4789 15 1 1.2884 0.8823 7.8672 16 1 0.8137 3.1487 8.5874 17 1 0.5214 2.5293 6.2611 18 6 2.9768 2.4308 3.4807 19 7 2.7283 3.3189 0.6445 20 7 2.6741 3.3339 -0.6394 21 6 2.2494 2.1738 -1.0866 22 7 2.0662 1.8224 -2.4127 23 6 0.9487 2.5732 -3.0076 24 6 1.1953 4.0686 -2.7992 25 7 2.5440 4.4188 -3.2350 26 6 3.5127 3.5121 -3.4009 27 8 4.6142 3.8933 -3.7360 28 6 3.2937 2.0406 -3.1895 29 1 -0.3634 -1.0216 0.1111 30 1 -0.3634 0.6071 0.8292 31 1 -0.3633 0.4146 -0.9404 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 0.9283 0.0928 2.1238 35 1 0.7903 -0.6067 4.4752 36 1 2.0314 0.6116 6.2065 37 1 3.5459 3.2355 9.0102 38 1 3.5884 3.2760 3.2017 39 1 0.8904 2.3575 -4.0745 40 1 0.0158 2.2855 -2.5228 41 1 0.4687 4.6390 -3.3778 42 1 1.0847 4.3094 -1.7418 43 1 2.7465 5.3508 -3.4118 44 1 4.1430 1.6224 -2.6492 45 1 3.2027 1.5458 -4.1564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650305477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:58 Heat of formation + Delta-G solvation = 70.751889 kcal Electronic energy + Delta-G solvation = -29991.182627 eV Core-core repulsion = 26009.631066 eV Total energy + Delta-G solvation = -3981.551561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.13737 -41.51127 -39.67102 -38.53580 -36.90468 -35.66000 -35.27594 -33.06404 -32.25001 -31.52870 -30.98254 -29.96469 -27.33769 -27.15412 -25.30634 -24.60842 -24.27672 -22.84489 -21.98842 -21.86718 -20.36947 -19.43034 -18.63219 -18.11602 -17.90002 -17.65667 -17.20838 -16.90040 -16.64135 -16.45353 -16.03928 -15.71319 -15.49660 -15.02690 -14.86104 -14.57317 -14.41756 -14.17564 -14.07565 -13.88859 -13.64033 -13.40250 -13.22319 -13.02503 -12.82386 -12.74421 -12.60448 -12.34515 -12.28809 -12.24935 -11.96996 -11.66596 -11.61018 -11.32696 -11.16877 -11.08667 -10.63281 -10.07258 -9.94662 -9.62114 -9.15439 -8.90106 -6.56858 -0.00999 0.73871 0.95326 1.11074 1.25657 1.42571 1.49537 1.51778 1.79850 2.11709 2.15267 2.60042 2.62067 3.25499 3.40183 3.44412 3.58057 3.73539 3.80976 4.05860 4.07707 4.12439 4.28949 4.33862 4.35245 4.38535 4.42658 4.48183 4.56426 4.63490 4.66508 4.83737 4.85057 4.92384 4.97376 5.10938 5.14687 5.23852 5.29090 5.38663 5.47315 5.66292 5.75543 5.77273 5.85016 6.04529 6.16809 6.25591 6.30991 6.65115 6.74159 7.10145 7.58504 8.19102 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.003048 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.476098 B = 9184.518250 C =10028.033949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.087 3.913 3 N -0.445 5.445 4 C 0.238 3.762 5 C 0.000 4.000 6 C -0.209 4.209 7 C -0.072 4.072 8 C -0.234 4.234 9 C 0.075 3.925 10 C -0.485 4.485 11 H 0.047 0.953 12 C 0.042 3.958 13 N -0.854 5.854 14 Si 0.972 3.028 15 H -0.245 1.245 16 H -0.282 1.282 17 H -0.248 1.248 18 C -0.178 4.178 19 N -0.324 5.324 20 N -0.328 5.328 21 C 0.328 3.672 22 N -0.432 5.432 23 C 0.044 3.956 24 C 0.074 3.926 25 N -0.698 5.698 26 C 0.495 3.505 27 O -0.608 6.608 28 C 0.057 3.943 29 H 0.110 0.890 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.107 0.893 37 H 0.295 0.705 38 H 0.087 0.913 39 H 0.141 0.859 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.049 0.951 43 H 0.400 0.600 44 H 0.097 0.903 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.335 -10.574 -21.981 28.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.033 4.033 3 N -0.137 5.137 4 C -0.027 4.027 5 C -0.003 4.003 6 C -0.229 4.229 7 C -0.089 4.089 8 C -0.254 4.254 9 C 0.072 3.928 10 C -0.515 4.515 11 H 0.066 0.934 12 C -0.172 4.172 13 N -0.481 5.481 14 Si 0.795 3.205 15 H -0.170 1.170 16 H -0.209 1.209 17 H -0.172 1.172 18 C -0.199 4.199 19 N -0.166 5.166 20 N -0.173 5.173 21 C -0.028 4.028 22 N -0.158 5.158 23 C -0.083 4.083 24 C -0.051 4.051 25 N -0.347 5.347 26 C 0.281 3.719 27 O -0.490 6.490 28 C -0.073 4.073 29 H 0.129 0.871 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.142 0.858 33 H 0.123 0.877 34 H 0.171 0.829 35 H 0.167 0.833 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.158 0.842 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.067 0.933 43 H 0.236 0.764 44 H 0.115 0.885 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -14.376 -9.650 -21.921 27.934 hybrid contribution 0.320 0.757 0.979 1.278 sum -14.057 -8.893 -20.942 26.744 Atomic orbital electron populations 1.22203 0.91780 1.05146 1.03053 1.22541 0.97486 0.76626 1.06664 1.46562 1.48232 1.14673 1.04200 1.23002 1.01112 0.88668 0.89923 1.17394 1.00139 0.97647 0.85076 1.21251 1.05093 0.99301 0.97227 1.20981 0.97112 0.98758 0.92089 1.21364 1.05893 0.98700 0.99399 1.17712 0.91361 0.91624 0.92081 1.19484 1.07472 1.30907 0.93620 0.93436 1.26943 1.04076 0.91681 0.94491 1.69710 1.39128 1.37076 1.02146 0.85421 0.77226 0.79229 0.78654 1.16989 1.20895 1.17183 1.21034 1.04779 1.01239 0.92889 1.74392 1.20189 1.18570 1.03403 1.74640 1.20156 1.19054 1.03420 1.22552 1.03457 0.87608 0.89197 1.59385 1.06970 1.55339 0.94066 1.22963 0.93079 0.88742 1.03485 1.22278 0.83224 0.98847 1.00769 1.45331 1.11934 1.10709 1.66767 1.21221 0.83687 0.91336 0.75671 1.90737 1.25308 1.81911 1.51034 1.22538 0.91985 0.90569 1.02214 0.87135 0.93189 0.90626 0.85772 0.87741 0.82942 0.83279 0.87569 0.89492 0.89435 0.84156 0.86328 0.86258 0.93269 0.76418 0.88492 0.81379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.43 71.98 0.68 -1.24 16 2 C 0.09 1.44 6.00 86.38 0.52 1.96 16 3 N -0.45 -11.92 2.83 -516.76 -1.46 -13.39 16 4 C 0.24 8.89 7.69 136.23 1.05 9.94 16 5 C 0.00 0.01 5.86 -20.13 -0.12 -0.11 16 6 C -0.21 -6.84 8.65 22.71 0.20 -6.64 16 7 C -0.07 -2.46 10.01 22.18 0.22 -2.24 16 8 C -0.23 -10.20 7.04 22.78 0.16 -10.03 16 9 C 0.07 3.81 5.14 -21.32 -0.11 3.70 16 10 C -0.49 -27.93 9.59 23.47 0.23 -27.70 16 11 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 12 C 0.04 2.26 5.45 85.25 0.46 2.72 16 13 N -0.85 -47.60 13.93 21.82 0.30 -47.30 16 14 Si 0.97 41.57 24.41 68.60 1.67 43.25 16 15 H -0.25 -9.42 6.66 99.48 0.66 -8.76 16 16 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.25 -10.70 6.72 99.48 0.67 -10.03 16 18 C -0.18 -8.71 9.44 22.99 0.22 -8.49 16 19 N -0.32 -13.70 12.01 -50.79 -0.61 -14.31 16 20 N -0.33 -11.61 8.44 -58.02 -0.49 -12.10 16 21 C 0.33 8.66 5.98 260.12 1.56 10.21 16 22 N -0.43 -7.08 5.06 -710.49 -3.59 -10.68 16 23 C 0.04 0.43 6.02 86.24 0.52 0.95 16 24 C 0.07 1.10 6.38 86.47 0.55 1.65 16 25 N -0.70 -14.64 5.09 -466.10 -2.37 -17.01 16 26 C 0.49 12.67 6.75 87.68 0.59 13.26 16 27 O -0.61 -21.55 17.82 -3.03 -0.05 -21.61 16 28 C 0.06 1.03 5.84 85.42 0.50 1.53 16 29 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.82 7.14 -2.39 -0.02 0.81 16 31 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.10 1.84 5.86 -2.39 -0.01 1.83 16 34 H 0.15 3.61 3.33 -2.91 -0.01 3.60 16 35 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.11 4.55 4.39 -2.91 -0.01 4.54 16 37 H 0.29 14.65 8.30 -92.71 -0.77 13.88 16 38 H 0.09 4.65 7.97 -2.91 -0.02 4.62 16 39 H 0.14 0.42 8.08 -2.39 -0.02 0.40 16 40 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.05 1.13 6.32 -2.38 -0.02 1.11 16 43 H 0.40 8.36 8.84 -92.71 -0.82 7.54 16 44 H 0.10 2.14 8.01 -2.39 -0.02 2.12 16 45 H 0.17 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -80.77 358.55 0.77 -80.00 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.16 Total: 23.68 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 7.22 Total: -10.53 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -8.22 Total: -114.77 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.61 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.67 Total: 43.25 kcal Total: -80.77 0.77 -80.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650305477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.748 kcal (2) G-P(sol) polarization free energy of solvation -80.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds