Wall clock time and date at job start Wed Apr 1 2020 00:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.34328 * 126.44317 * 119.99639 * 4 2 1 6 6 N 1.34480 * 107.66585 * 180.02562 * 5 4 2 7 7 C 1.30256 * 108.70317 * 359.97438 * 6 5 4 8 8 C 1.50694 * 125.62139 * 180.02562 * 7 6 5 9 9 N 1.46907 * 109.46969 * 89.98324 * 8 7 6 10 10 C 1.46901 * 110.99765 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47839 * 34.99653 * 10 9 8 12 12 C 1.53002 * 109.46978 * 274.99352 * 10 9 8 13 13 C 1.53003 * 109.46892 * 154.99668 * 10 9 8 14 14 N 1.46499 * 109.47134 * 304.99929 * 13 10 9 15 15 C 1.34774 * 119.99707 * 180.02562 * 14 13 10 16 16 O 1.21281 * 120.00192 * 359.97438 * 15 14 13 17 17 C 1.50707 * 119.99716 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.47152 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00290 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99683 * 359.97438 * 19 18 17 21 21 C 1.38793 * 120.00299 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00239 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99931 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47191 * 89.99709 * 23 21 19 25 25 H 1.48503 * 109.47142 * 210.00082 * 23 21 19 26 26 H 1.48502 * 109.47010 * 329.99779 * 23 21 19 27 27 O 1.33971 * 108.76123 * 359.73747 * 7 6 5 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.07999 * 126.16791 * 0.02562 * 5 4 2 36 36 H 1.09003 * 109.47267 * 209.97874 * 8 7 6 37 37 H 1.09002 * 109.47609 * 329.98418 * 8 7 6 38 38 H 1.00891 * 110.99981 * 56.04566 * 9 8 7 39 39 H 1.08997 * 109.47241 * 180.02562 * 12 10 9 40 40 H 1.09004 * 109.46894 * 300.00460 * 12 10 9 41 41 H 1.09005 * 109.47016 * 60.00168 * 12 10 9 42 42 H 1.09009 * 109.46961 * 64.99765 * 13 10 9 43 43 H 1.09001 * 109.47211 * 184.99633 * 13 10 9 44 44 H 0.96996 * 119.99818 * 359.97438 * 14 13 10 45 45 H 1.09006 * 109.46581 * 299.99063 * 17 15 14 46 46 H 1.09001 * 109.47303 * 59.99175 * 17 15 14 47 47 H 0.96998 * 120.00318 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.8077 -1.8071 1.2580 6 7 3.0276 -2.1191 2.5475 7 6 2.4133 -1.2498 3.2982 8 6 2.4068 -1.2406 4.8051 9 7 3.5361 -0.4385 5.2947 10 6 3.5622 -0.4074 6.7631 11 1 3.2214 -1.3664 7.1531 12 6 2.6394 0.7046 7.2661 13 6 4.9905 -0.1405 7.2422 14 7 5.8942 -1.1375 6.6629 15 6 7.2109 -1.0997 6.9477 16 8 7.6478 -0.2400 7.6832 17 6 8.1404 -2.1257 6.3522 18 16 9.8302 -1.8100 6.9189 19 6 10.6782 -3.1170 6.0960 20 1 10.1307 -3.8058 5.4698 21 6 12.0497 -3.2613 6.2526 22 7 12.6831 -4.2381 5.6383 23 14 12.9965 -2.0703 7.3363 24 1 13.0335 -2.5890 8.7273 25 1 14.3830 -1.9295 6.8234 26 1 12.3256 -0.7456 7.3197 27 8 1.7932 -0.3616 2.5099 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.1862 -2.3418 0.3994 36 1 1.4722 -0.8078 5.1619 37 1 2.4991 -2.2617 5.1752 38 1 3.5086 0.4952 4.9133 39 1 2.6591 0.7281 8.3557 40 1 2.9803 1.6638 6.8762 41 1 1.6218 0.5146 6.9248 42 1 5.2992 0.8563 6.9271 43 1 5.0271 -0.2054 8.3297 44 1 5.5447 -1.8253 6.0750 45 1 7.8314 -3.1223 6.6676 46 1 8.1042 -2.0611 5.2648 47 1 13.6415 -4.3392 5.7480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662169425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:34 Heat of formation + Delta-G solvation = -27.503414 kcal Electronic energy + Delta-G solvation = -26467.107230 eV Core-core repulsion = 22584.446199 eV Total energy + Delta-G solvation = -3882.661031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.64903 -39.31512 -37.81039 -36.20291 -35.00434 -34.12080 -32.37001 -32.05093 -29.61629 -29.10770 -27.72443 -26.38306 -25.69949 -25.36355 -23.05971 -22.29802 -21.39897 -20.64020 -20.20285 -17.84362 -17.37583 -17.12740 -16.33242 -16.22687 -15.98865 -15.91864 -15.32816 -15.02587 -14.89152 -14.77413 -14.14434 -13.82388 -13.73837 -13.69210 -13.42398 -13.27473 -12.92715 -12.82251 -12.75745 -12.74342 -12.70640 -12.12517 -12.06865 -11.80290 -11.72239 -11.58453 -11.54019 -11.31121 -11.19382 -10.95034 -10.69825 -10.51634 -9.79289 -9.39993 -9.13534 -8.94091 -8.91328 -8.76211 -8.41016 -6.82999 -6.21969 -3.92630 1.08646 2.23212 2.39782 2.88027 3.13753 3.37428 3.41360 3.54154 3.56270 3.75392 3.89187 4.12676 4.32402 4.39547 4.45197 4.51126 4.57396 4.63523 4.78983 4.82538 4.86522 4.87979 5.03694 5.07593 5.16944 5.21315 5.23871 5.26514 5.30014 5.33092 5.44951 5.47695 5.57250 5.63330 5.66180 5.67403 5.76936 5.82337 5.91382 6.00840 6.16516 6.36833 6.67083 6.83685 7.47644 7.84992 8.01403 8.49787 8.66990 9.24385 10.87357 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.002140 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.462362 B =13082.453502 C =14585.320367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.008 4.008 3 C -0.150 4.150 4 C -0.037 4.037 5 C -0.040 4.040 6 N -0.457 5.457 7 C 0.185 3.815 8 C 0.160 3.840 9 N -0.676 5.676 10 C 0.073 3.927 11 H 0.091 0.909 12 C -0.182 4.182 13 C 0.135 3.865 14 N -0.723 5.723 15 C 0.530 3.470 16 O -0.528 6.528 17 C -0.122 4.122 18 S -0.145 6.145 19 C -0.519 4.519 20 H 0.088 0.912 21 C 0.094 3.906 22 N -0.882 5.882 23 Si 0.857 3.143 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.235 1.235 27 O -0.201 6.201 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.183 0.817 36 H 0.060 0.940 37 H 0.116 0.884 38 H 0.350 0.650 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.406 0.594 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.099 9.822 -8.200 33.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 C -0.207 4.207 4 C -0.090 4.090 5 C -0.179 4.179 6 N -0.185 5.185 7 C -0.023 4.023 8 C 0.030 3.970 9 N -0.310 5.310 10 C -0.036 4.036 11 H 0.109 0.891 12 C -0.241 4.241 13 C 0.010 3.990 14 N -0.377 5.377 15 C 0.315 3.685 16 O -0.404 6.404 17 C -0.272 4.272 18 S 0.082 5.918 19 C -0.666 4.666 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.519 5.519 23 Si 0.682 3.318 24 H -0.193 1.193 25 H -0.200 1.200 26 H -0.159 1.159 27 O -0.087 6.087 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.200 0.800 36 H 0.078 0.922 37 H 0.134 0.866 38 H 0.169 0.831 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.241 0.759 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -29.429 10.179 -6.797 31.873 hybrid contribution -1.128 0.047 -1.023 1.524 sum -30.557 10.227 -7.820 33.159 Atomic orbital electron populations 1.21881 0.93488 1.02551 1.02714 1.19762 0.96470 0.96127 0.90357 1.21883 1.01834 0.94329 1.02690 1.23438 1.03019 0.98862 0.83722 1.23159 1.01813 0.97664 0.95234 1.70459 1.19844 1.26232 1.02002 1.26004 0.94208 0.86455 0.95586 1.20255 0.93838 1.01546 0.81331 1.60475 1.43219 1.19606 1.07661 1.21874 0.95405 0.99895 0.86456 0.89075 1.22438 0.99485 0.99184 1.03003 1.21231 0.87047 0.93001 0.97763 1.45754 1.07001 1.33411 1.51565 1.20246 0.82116 0.85457 0.80638 1.90682 1.76075 1.37230 1.36381 1.23259 0.99180 1.00593 1.04216 1.84727 0.97851 1.43378 1.65882 1.22339 0.95880 1.14452 1.33963 0.89383 1.24719 0.96607 0.95113 0.94978 1.69943 1.09681 1.30368 1.41863 0.86727 0.80186 0.83685 0.81199 1.19260 1.20040 1.15922 1.84338 1.59623 1.48277 1.16506 0.91382 0.92159 0.92151 0.87800 0.91924 0.91382 0.92141 0.80014 0.92162 0.86588 0.83109 0.91038 0.91784 0.92204 0.91732 0.91109 0.75901 0.88637 0.88489 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.18 37.16 0.34 -0.37 16 2 C -0.01 -0.05 3.33 -91.77 -0.31 -0.35 16 3 C -0.15 -0.81 9.17 37.15 0.34 -0.47 16 4 C -0.04 -0.32 5.89 -35.68 -0.21 -0.53 16 5 C -0.04 -0.40 11.79 -17.77 -0.21 -0.61 16 6 N -0.46 -5.48 11.29 -11.10 -0.13 -5.60 16 7 C 0.18 1.83 7.85 -12.95 -0.10 1.73 16 8 C 0.16 1.11 6.11 -4.97 -0.03 1.08 16 9 N -0.68 -5.18 5.68 -107.98 -0.61 -5.79 16 10 C 0.07 0.51 2.75 -67.71 -0.19 0.32 16 11 H 0.09 0.56 7.80 -51.93 -0.40 0.15 16 12 C -0.18 -0.95 9.16 37.16 0.34 -0.61 16 13 C 0.13 1.44 5.37 -4.04 -0.02 1.42 16 14 N -0.72 -9.77 5.39 -60.29 -0.32 -10.10 16 15 C 0.53 9.90 7.85 -10.98 -0.09 9.81 16 16 O -0.53 -11.79 15.86 5.56 0.09 -11.70 16 17 C -0.12 -2.50 6.16 36.01 0.22 -2.28 16 18 S -0.14 -3.80 18.55 -107.50 -1.99 -5.80 16 19 C -0.52 -15.40 10.04 30.94 0.31 -15.09 16 20 H 0.09 2.73 8.03 -52.48 -0.42 2.31 16 21 C 0.09 2.82 5.50 -17.43 -0.10 2.73 16 22 N -0.88 -27.19 13.97 55.49 0.78 -26.42 16 23 Si 0.86 22.31 27.74 -169.99 -4.72 17.60 16 24 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.24 -6.12 6.74 56.52 0.38 -5.74 16 27 O -0.20 -1.94 10.78 5.34 0.06 -1.88 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.10 0.43 8.11 -51.93 -0.42 0.00 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.06 0.30 7.44 -51.93 -0.39 -0.09 16 37 H 0.12 0.76 8.05 -51.93 -0.42 0.34 16 38 H 0.35 2.66 8.46 -39.30 -0.33 2.33 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 41 H 0.06 0.26 7.45 -51.93 -0.39 -0.13 16 42 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.41 4.87 8.14 -40.82 -0.33 4.53 16 45 H 0.10 1.83 8.14 -51.91 -0.42 1.41 16 46 H 0.10 1.92 8.14 -51.92 -0.42 1.49 16 47 H 0.27 7.72 8.31 -40.82 -0.34 7.39 16 LS Contribution 407.91 15.07 6.15 6.15 Total: -1.00 -36.69 407.91 -8.15 -44.84 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.76 Total: 1.92 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 0.31 Total: -3.22 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.29 Total: -47.91 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.15 Total: -13.58 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.72 Total: 17.60 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -1.99 Total: -5.80 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.69 -8.15 -44.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662169425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.338 kcal (2) G-P(sol) polarization free energy of solvation -36.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds