Wall clock time and date at job start Wed Apr 1 2020 00:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.34328 * 126.44317 * 119.99639 * 4 2 1 6 6 N 1.34480 * 107.66585 * 180.02562 * 5 4 2 7 7 C 1.30256 * 108.70317 * 359.97438 * 6 5 4 8 8 C 1.50694 * 125.62139 * 180.02562 * 7 6 5 9 9 N 1.46907 * 109.46969 * 89.98324 * 8 7 6 10 10 C 1.46901 * 110.99765 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47839 * 34.99653 * 10 9 8 12 12 C 1.53002 * 109.46978 * 274.99352 * 10 9 8 13 13 C 1.53003 * 109.46892 * 154.99668 * 10 9 8 14 14 N 1.46499 * 109.47134 * 304.99929 * 13 10 9 15 15 C 1.34774 * 119.99707 * 180.02562 * 14 13 10 16 16 O 1.21281 * 120.00192 * 359.97438 * 15 14 13 17 17 C 1.50707 * 119.99716 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.47152 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00290 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99683 * 359.97438 * 19 18 17 21 21 C 1.38793 * 120.00299 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00239 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99931 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47191 * 89.99709 * 23 21 19 25 25 H 1.48503 * 109.47142 * 210.00082 * 23 21 19 26 26 H 1.48502 * 109.47010 * 329.99779 * 23 21 19 27 27 O 1.33971 * 108.76123 * 359.73747 * 7 6 5 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.07999 * 126.16791 * 0.02562 * 5 4 2 36 36 H 1.09003 * 109.47267 * 209.97874 * 8 7 6 37 37 H 1.09002 * 109.47609 * 329.98418 * 8 7 6 38 38 H 1.00891 * 110.99981 * 56.04566 * 9 8 7 39 39 H 1.08997 * 109.47241 * 180.02562 * 12 10 9 40 40 H 1.09004 * 109.46894 * 300.00460 * 12 10 9 41 41 H 1.09005 * 109.47016 * 60.00168 * 12 10 9 42 42 H 1.09009 * 109.46961 * 64.99765 * 13 10 9 43 43 H 1.09001 * 109.47211 * 184.99633 * 13 10 9 44 44 H 0.96996 * 119.99818 * 359.97438 * 14 13 10 45 45 H 1.09006 * 109.46581 * 299.99063 * 17 15 14 46 46 H 1.09001 * 109.47303 * 59.99175 * 17 15 14 47 47 H 0.96998 * 120.00318 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.8077 -1.8071 1.2580 6 7 3.0276 -2.1191 2.5475 7 6 2.4133 -1.2498 3.2982 8 6 2.4068 -1.2406 4.8051 9 7 3.5361 -0.4385 5.2947 10 6 3.5622 -0.4074 6.7631 11 1 3.2214 -1.3664 7.1531 12 6 2.6394 0.7046 7.2661 13 6 4.9905 -0.1405 7.2422 14 7 5.8942 -1.1375 6.6629 15 6 7.2109 -1.0997 6.9477 16 8 7.6478 -0.2400 7.6832 17 6 8.1404 -2.1257 6.3522 18 16 9.8302 -1.8100 6.9189 19 6 10.6782 -3.1170 6.0960 20 1 10.1307 -3.8058 5.4698 21 6 12.0497 -3.2613 6.2526 22 7 12.6831 -4.2381 5.6383 23 14 12.9965 -2.0703 7.3363 24 1 13.0335 -2.5890 8.7273 25 1 14.3830 -1.9295 6.8234 26 1 12.3256 -0.7456 7.3197 27 8 1.7932 -0.3616 2.5099 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.1862 -2.3418 0.3994 36 1 1.4722 -0.8078 5.1619 37 1 2.4991 -2.2617 5.1752 38 1 3.5086 0.4952 4.9133 39 1 2.6591 0.7281 8.3557 40 1 2.9803 1.6638 6.8762 41 1 1.6218 0.5146 6.9248 42 1 5.2992 0.8563 6.9271 43 1 5.0271 -0.2054 8.3297 44 1 5.5447 -1.8253 6.0750 45 1 7.8314 -3.1223 6.6676 46 1 8.1042 -2.0611 5.2648 47 1 13.6415 -4.3392 5.7480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662169425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:34 Heat of formation + Delta-G solvation = -56.340631 kcal Electronic energy + Delta-G solvation = -26468.357705 eV Core-core repulsion = 22584.446199 eV Total energy + Delta-G solvation = -3883.911506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.34911 -40.63900 -38.61637 -36.69801 -35.74792 -35.22913 -34.66710 -32.85937 -30.96499 -29.84261 -28.11591 -27.88792 -27.01871 -26.36338 -23.72691 -22.89259 -22.08269 -21.62572 -21.25063 -19.84894 -18.17968 -17.82677 -17.71635 -17.34513 -17.06041 -16.84413 -16.53271 -16.20092 -16.00922 -15.61629 -15.46704 -14.98825 -14.86531 -14.48204 -14.32598 -14.29128 -14.06466 -13.79805 -13.56770 -13.35306 -13.29643 -13.20703 -13.11769 -12.99056 -12.72222 -12.57546 -12.50386 -12.31965 -12.21625 -12.00247 -11.92374 -11.84961 -11.42512 -11.16549 -10.96632 -10.53577 -10.01841 -9.76958 -9.50836 -8.98652 -8.50873 -6.21703 0.40753 1.00428 1.31818 1.47662 1.57456 1.59577 1.63196 1.68170 2.25252 2.34323 2.73605 2.86877 2.93717 3.25142 3.60792 3.80609 3.88638 3.93188 4.03149 4.09258 4.09484 4.22997 4.25654 4.31637 4.39162 4.49027 4.50382 4.66630 4.70002 4.71167 4.80364 4.84196 4.87757 4.88356 4.95496 4.96273 5.13412 5.26995 5.27355 5.29611 5.33892 5.51031 5.71379 5.82576 6.11897 6.20756 6.57799 6.76224 6.93833 7.27701 8.61750 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.002140 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.462362 B =13082.453502 C =14585.320367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.009 4.009 3 C -0.148 4.148 4 C -0.032 4.032 5 C -0.067 4.067 6 N -0.495 5.495 7 C 0.180 3.820 8 C 0.164 3.836 9 N -0.690 5.690 10 C 0.087 3.913 11 H 0.107 0.893 12 C -0.176 4.176 13 C 0.130 3.870 14 N -0.699 5.699 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.111 4.111 18 S -0.172 6.172 19 C -0.530 4.530 20 H 0.059 0.941 21 C 0.043 3.957 22 N -0.917 5.917 23 Si 0.917 3.083 24 H -0.261 1.261 25 H -0.258 1.258 26 H -0.237 1.237 27 O -0.206 6.206 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.121 0.879 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.195 0.805 36 H 0.086 0.914 37 H 0.121 0.879 38 H 0.350 0.650 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.416 0.584 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.184 10.968 -8.070 35.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 C -0.205 4.205 4 C -0.086 4.086 5 C -0.205 4.205 6 N -0.225 5.225 7 C -0.027 4.027 8 C 0.035 3.965 9 N -0.323 5.323 10 C -0.023 4.023 11 H 0.125 0.875 12 C -0.235 4.235 13 C 0.006 3.994 14 N -0.351 5.351 15 C 0.318 3.682 16 O -0.447 6.447 17 C -0.262 4.262 18 S 0.054 5.946 19 C -0.678 4.678 20 H 0.078 0.922 21 C -0.162 4.162 22 N -0.555 5.555 23 Si 0.739 3.261 24 H -0.185 1.185 25 H -0.182 1.182 26 H -0.161 1.161 27 O -0.093 6.093 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.139 0.861 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.212 0.788 36 H 0.104 0.896 37 H 0.139 0.861 38 H 0.169 0.831 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.253 0.747 45 H 0.128 0.872 46 H 0.123 0.877 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -31.566 11.307 -6.694 34.191 hybrid contribution -0.640 -0.344 -1.158 1.367 sum -32.206 10.963 -7.851 34.915 Atomic orbital electron populations 1.21857 0.92585 1.02558 1.03237 1.19969 0.97159 0.96112 0.89531 1.21867 1.01113 0.94246 1.03249 1.23998 1.02005 0.98398 0.84178 1.23501 1.02925 0.98768 0.95257 1.70426 1.21256 1.27654 1.03150 1.26557 0.93594 0.85976 0.96604 1.20376 0.94654 1.01923 0.79561 1.60393 1.44083 1.19783 1.08068 1.21755 0.93012 1.01432 0.86075 0.87530 1.22383 0.99704 0.98169 1.03229 1.21484 0.88537 0.91559 0.97814 1.45597 1.05461 1.33670 1.50391 1.19880 0.83455 0.84513 0.80372 1.90670 1.77023 1.38636 1.38420 1.23256 0.95933 1.02264 1.04713 1.84605 1.01907 1.42127 1.65953 1.22471 0.96450 1.15008 1.33825 0.92248 1.25606 0.97569 0.96752 0.96254 1.70021 1.10459 1.31907 1.43157 0.85829 0.79387 0.81274 0.79629 1.18514 1.18235 1.16118 1.84349 1.59666 1.48329 1.16977 0.89495 0.92987 0.92397 0.86082 0.93002 0.89419 0.92989 0.78754 0.89596 0.86064 0.83127 0.90603 0.92112 0.90580 0.92735 0.91012 0.74705 0.87158 0.87692 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.18 71.98 0.66 -0.47 16 2 C -0.01 -0.09 3.33 -11.54 -0.04 -0.13 16 3 C -0.15 -1.40 9.17 71.98 0.66 -0.74 16 4 C -0.03 -0.54 5.89 24.79 0.15 -0.39 16 5 C -0.07 -1.32 11.79 83.39 0.98 -0.34 16 6 N -0.50 -11.79 11.29 -303.83 -3.43 -15.22 16 7 C 0.18 3.41 7.85 88.34 0.69 4.10 16 8 C 0.16 1.94 6.11 85.55 0.52 2.46 16 9 N -0.69 -9.19 5.68 -495.55 -2.81 -12.01 16 10 C 0.09 0.97 2.75 44.92 0.12 1.10 16 11 H 0.11 0.94 7.80 -2.39 -0.02 0.92 16 12 C -0.18 -1.34 9.16 71.98 0.66 -0.68 16 13 C 0.13 2.57 5.37 86.38 0.46 3.03 16 14 N -0.70 -17.80 5.39 -463.04 -2.49 -20.29 16 15 C 0.53 19.45 7.85 87.66 0.69 20.13 16 16 O -0.57 -25.14 15.86 -3.03 -0.05 -25.19 16 17 C -0.11 -4.50 6.16 71.24 0.44 -4.06 16 18 S -0.17 -9.08 18.55 -56.49 -1.05 -10.13 16 19 C -0.53 -32.00 10.04 67.95 0.68 -31.31 16 20 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 21 C 0.04 2.62 5.50 84.86 0.47 3.09 16 22 N -0.92 -57.21 13.97 21.65 0.30 -56.91 16 23 Si 0.92 46.13 27.74 68.60 1.90 48.03 16 24 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.24 -11.94 6.74 99.48 0.67 -11.27 16 27 O -0.21 -3.81 10.78 -3.81 -0.04 -3.85 16 28 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.12 0.77 8.11 -2.39 -0.02 0.75 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.20 2.99 8.06 -2.91 -0.02 2.96 16 36 H 0.09 0.59 7.44 -2.39 -0.02 0.57 16 37 H 0.12 1.31 8.05 -2.39 -0.02 1.29 16 38 H 0.35 4.74 8.46 -89.70 -0.76 3.98 16 39 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.06 0.53 8.13 -2.39 -0.02 0.51 16 41 H 0.08 0.38 7.45 -2.38 -0.02 0.36 16 42 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.42 9.16 8.14 -92.71 -0.75 8.41 16 45 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 46 H 0.10 4.10 8.14 -2.40 -0.02 4.08 16 47 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -80.40 407.91 -1.10 -81.50 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -0.57 Total: 18.27 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 7.15 Total: -4.20 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -8.44 Total: -104.43 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.09 Total: -29.04 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.90 Total: 48.03 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.13 kcal Total: -80.40 -1.10 -81.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662169425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.159 kcal (2) G-P(sol) polarization free energy of solvation -80.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds