Wall clock time and date at job start Wed Apr 1 2020 00:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 C 1.34335 * 126.44210 * 119.99804 * 4 2 1 6 6 N 1.34477 * 107.66690 * 180.02562 * 5 4 2 7 7 C 1.30265 * 108.70086 * 0.02562 * 6 5 4 8 8 C 1.50701 * 125.61587 * 179.97438 * 7 6 5 9 9 N 1.46896 * 109.46987 * 90.02412 * 8 7 6 10 10 C 1.46905 * 110.99873 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47047 * 324.99750 * 10 9 8 12 12 C 1.52999 * 109.46853 * 85.00249 * 10 9 8 13 13 C 1.53004 * 109.47188 * 204.99900 * 10 9 8 14 14 N 1.46503 * 109.46923 * 55.00051 * 13 10 9 15 15 C 1.34772 * 120.00063 * 180.02562 * 14 13 10 16 16 O 1.21286 * 119.99850 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00109 * 179.97438 * 15 14 13 18 18 S 1.81004 * 109.47060 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99783 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00365 * 0.02562 * 19 18 17 21 21 C 1.38800 * 119.99841 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00128 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99989 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46825 * 90.00299 * 23 21 19 25 25 H 1.48497 * 109.47014 * 209.99952 * 23 21 19 26 26 H 1.48496 * 109.47211 * 330.00529 * 23 21 19 27 27 O 1.33963 * 108.75915 * 359.72990 * 7 6 5 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 1.07994 * 126.16771 * 0.02562 * 5 4 2 36 36 H 1.09000 * 109.46777 * 210.02236 * 8 7 6 37 37 H 1.08992 * 109.47255 * 330.02303 * 8 7 6 38 38 H 1.00903 * 111.00413 * 303.95152 * 9 8 7 39 39 H 1.09004 * 109.47294 * 60.00084 * 12 10 9 40 40 H 1.09004 * 109.46612 * 180.02562 * 12 10 9 41 41 H 1.08993 * 109.47072 * 299.99555 * 12 10 9 42 42 H 1.09001 * 109.47107 * 175.00056 * 13 10 9 43 43 H 1.09002 * 109.47010 * 295.00780 * 13 10 9 44 44 H 0.97002 * 120.00185 * 359.97438 * 14 13 10 45 45 H 1.08993 * 109.47486 * 299.99855 * 17 15 14 46 46 H 1.09004 * 109.47386 * 60.00338 * 17 15 14 47 47 H 0.96994 * 119.99909 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8078 -1.8070 1.2579 6 7 3.0278 -2.1190 2.5474 7 6 2.4125 -1.2503 3.2981 8 6 2.4050 -1.2420 4.8051 9 7 3.5328 -0.4390 5.2959 10 6 3.5571 -0.4078 6.7645 11 1 2.5357 -0.4049 7.1447 12 6 4.2932 -1.6424 7.2887 13 6 4.2803 0.8555 7.2358 14 7 3.6470 2.0330 6.6369 15 6 4.1195 3.2650 6.9110 16 8 5.0688 3.3990 7.6540 17 6 3.4684 4.4762 6.2945 18 16 4.3239 5.9706 6.8522 19 6 3.3838 7.1959 6.0038 20 1 2.5586 6.9020 5.3721 21 6 3.7038 8.5389 6.1474 22 7 3.0012 9.4542 5.5140 23 14 5.1306 9.0473 7.2406 24 1 6.3786 9.0917 6.4369 25 1 4.8619 10.3913 7.8121 26 1 5.2858 8.0631 8.3417 27 8 1.7920 -0.3625 2.5098 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 3.1863 -2.3417 0.3994 36 1 1.4695 -0.8105 5.1613 37 1 2.4980 -2.2632 5.1745 38 1 4.4076 -0.7804 4.9267 39 1 5.3147 -1.6452 6.9083 40 1 4.3108 -1.6194 8.3783 41 1 3.7780 -2.5423 6.9529 42 1 4.2212 0.9241 8.3221 43 1 5.3259 0.8108 6.9309 44 1 2.8880 1.9258 6.0424 45 1 3.5276 4.4072 5.2084 46 1 2.4229 4.5214 6.5993 47 1 3.2246 10.3927 5.6147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662169426.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:37 Heat of formation + Delta-G solvation = -28.882470 kcal Electronic energy + Delta-G solvation = -26708.957473 eV Core-core repulsion = 22826.236642 eV Total energy + Delta-G solvation = -3882.720831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.62749 -39.34021 -37.81183 -36.10129 -34.99925 -34.12398 -32.40240 -32.04883 -29.62760 -29.10013 -27.56867 -26.36377 -25.72205 -25.38721 -23.06201 -22.17804 -21.41551 -20.59011 -20.24172 -17.88161 -17.43993 -17.07518 -16.27036 -16.22064 -15.97680 -15.85521 -15.17118 -14.95056 -14.89835 -14.66875 -14.54260 -13.83216 -13.65223 -13.58748 -13.38646 -13.28938 -12.92047 -12.86001 -12.75452 -12.60510 -12.57092 -12.09843 -12.00343 -11.75360 -11.64964 -11.56381 -11.45157 -11.30857 -11.22217 -10.97575 -10.77901 -10.55151 -9.82183 -9.43379 -9.13984 -8.97077 -8.90493 -8.79561 -8.44506 -6.86520 -6.25432 -3.96250 1.12166 2.27222 2.37003 2.84541 3.10217 3.35110 3.39120 3.51935 3.53855 3.73479 3.91424 4.19903 4.36722 4.40838 4.47368 4.61093 4.63335 4.64920 4.79570 4.84111 4.86403 4.94913 4.96891 5.13704 5.24608 5.25882 5.30926 5.34024 5.39635 5.44692 5.46403 5.54529 5.57419 5.69064 5.72132 5.81257 5.81872 5.86389 5.92285 5.98937 6.10539 6.37609 6.65089 6.83781 7.43309 7.80684 7.97928 8.45602 8.63342 9.21065 10.83907 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009429 B = 0.002615 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.983578 B =10703.417818 C =13278.659803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.009 4.009 3 C -0.152 4.152 4 C -0.028 4.028 5 C -0.047 4.047 6 N -0.478 5.478 7 C 0.190 3.810 8 C 0.156 3.844 9 N -0.680 5.680 10 C 0.074 3.926 11 H 0.090 0.910 12 C -0.182 4.182 13 C 0.134 3.866 14 N -0.723 5.723 15 C 0.529 3.471 16 O -0.527 6.527 17 C -0.122 4.122 18 S -0.144 6.144 19 C -0.519 4.519 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.882 5.882 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.235 1.235 27 O -0.185 6.185 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.181 0.819 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.354 0.646 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.404 0.596 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.830 -27.376 -7.702 28.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 C -0.209 4.209 4 C -0.082 4.082 5 C -0.186 4.186 6 N -0.208 5.208 7 C -0.017 4.017 8 C 0.026 3.974 9 N -0.313 5.313 10 C -0.036 4.036 11 H 0.108 0.892 12 C -0.241 4.241 13 C 0.009 3.991 14 N -0.377 5.377 15 C 0.315 3.685 16 O -0.402 6.402 17 C -0.273 4.273 18 S 0.083 5.917 19 C -0.667 4.667 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.519 5.519 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 O -0.071 6.071 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.198 0.802 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.173 0.827 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.239 0.761 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.300 -26.823 -6.289 27.748 hybrid contribution -0.934 -0.174 -1.084 1.441 sum -4.234 -26.998 -7.372 28.305 Atomic orbital electron populations 1.21888 0.93365 1.02390 1.03076 1.19791 0.96617 0.96333 0.90070 1.21900 1.01745 0.94061 1.03203 1.23534 1.02294 0.98409 0.84002 1.23035 1.02583 0.97997 0.94955 1.70405 1.21446 1.26567 1.02349 1.25953 0.94257 0.85922 0.95604 1.20226 0.97089 0.98520 0.81521 1.60504 1.06644 1.56078 1.08107 1.21868 1.00767 0.94538 0.86444 0.89183 1.22431 1.01260 0.97576 1.02819 1.21247 0.97034 0.83199 0.97599 1.45750 1.36192 1.04931 1.50875 1.20242 0.83509 0.83884 0.80891 1.90689 1.27328 1.86020 1.36163 1.23256 1.03704 0.96333 1.03978 1.84760 1.45746 0.96778 1.64444 1.22331 1.19190 0.92214 1.32977 0.89435 1.24716 0.96332 0.95341 0.94957 1.69941 1.39379 1.01159 1.41388 0.86732 0.82744 0.79670 0.82692 1.19239 1.20007 1.15893 1.84398 1.58930 1.47550 1.16216 0.91861 0.92321 0.91280 0.87972 0.91642 0.92015 0.91278 0.80154 0.87944 0.90567 0.82651 0.91716 0.91114 0.92083 0.91075 0.91660 0.76103 0.88615 0.88640 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.18 37.16 0.34 -0.59 16 2 C -0.01 -0.06 3.33 -91.78 -0.31 -0.37 16 3 C -0.15 -1.16 9.18 37.16 0.34 -0.82 16 4 C -0.03 -0.27 5.89 -35.69 -0.21 -0.48 16 5 C -0.05 -0.45 11.79 -17.77 -0.21 -0.65 16 6 N -0.48 -5.21 11.29 -11.10 -0.13 -5.33 16 7 C 0.19 1.89 7.86 -12.94 -0.10 1.79 16 8 C 0.16 1.09 6.11 -4.98 -0.03 1.06 16 9 N -0.68 -5.23 5.68 -107.99 -0.61 -5.85 16 10 C 0.07 0.51 2.75 -67.71 -0.19 0.32 16 11 H 0.09 0.54 7.80 -51.93 -0.40 0.13 16 12 C -0.18 -1.01 9.16 37.16 0.34 -0.67 16 13 C 0.13 1.42 5.37 -4.04 -0.02 1.40 16 14 N -0.72 -9.48 5.39 -60.29 -0.32 -9.80 16 15 C 0.53 9.68 7.85 -10.99 -0.09 9.59 16 16 O -0.53 -11.61 15.86 5.55 0.09 -11.53 16 17 C -0.12 -2.44 6.16 36.00 0.22 -2.22 16 18 S -0.14 -3.72 18.55 -107.50 -1.99 -5.71 16 19 C -0.52 -15.20 10.04 30.94 0.31 -14.88 16 20 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 21 C 0.09 2.81 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.89 13.97 55.49 0.78 -26.11 16 23 Si 0.86 22.07 27.74 -169.99 -4.72 17.36 16 24 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.23 -6.04 6.74 56.52 0.38 -5.66 16 27 O -0.19 -2.01 10.77 5.38 0.06 -1.96 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.49 8.11 -51.93 -0.42 0.07 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.10 0.59 8.05 -51.93 -0.42 0.18 16 37 H 0.08 0.44 7.44 -51.93 -0.39 0.05 16 38 H 0.35 2.90 8.47 -39.29 -0.33 2.57 16 39 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.30 7.45 -51.93 -0.39 -0.09 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.40 4.56 8.14 -40.82 -0.33 4.23 16 45 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 46 H 0.10 1.78 8.14 -51.91 -0.42 1.35 16 47 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 407.90 15.07 6.15 6.15 Total: -1.00 -35.90 407.90 -8.15 -44.05 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.76 Total: 2.54 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 0.31 Total: -3.81 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.29 Total: -47.10 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.15 Total: -13.48 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.72 Total: 17.36 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.99 Total: -5.71 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.90 -8.15 -44.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662169426.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.172 kcal (2) G-P(sol) polarization free energy of solvation -35.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds