Wall clock time and date at job start Wed Apr 1 2020 00:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 C 1.34335 * 126.44210 * 119.99804 * 4 2 1 6 6 N 1.34477 * 107.66690 * 180.02562 * 5 4 2 7 7 C 1.30265 * 108.70086 * 0.02562 * 6 5 4 8 8 C 1.50701 * 125.61587 * 179.97438 * 7 6 5 9 9 N 1.46896 * 109.46987 * 90.02412 * 8 7 6 10 10 C 1.46905 * 110.99873 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47047 * 324.99750 * 10 9 8 12 12 C 1.52999 * 109.46853 * 85.00249 * 10 9 8 13 13 C 1.53004 * 109.47188 * 204.99900 * 10 9 8 14 14 N 1.46503 * 109.46923 * 55.00051 * 13 10 9 15 15 C 1.34772 * 120.00063 * 180.02562 * 14 13 10 16 16 O 1.21286 * 119.99850 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00109 * 179.97438 * 15 14 13 18 18 S 1.81004 * 109.47060 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99783 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00365 * 0.02562 * 19 18 17 21 21 C 1.38800 * 119.99841 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00128 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99989 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46825 * 90.00299 * 23 21 19 25 25 H 1.48497 * 109.47014 * 209.99952 * 23 21 19 26 26 H 1.48496 * 109.47211 * 330.00529 * 23 21 19 27 27 O 1.33963 * 108.75915 * 359.72990 * 7 6 5 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 1.07994 * 126.16771 * 0.02562 * 5 4 2 36 36 H 1.09000 * 109.46777 * 210.02236 * 8 7 6 37 37 H 1.08992 * 109.47255 * 330.02303 * 8 7 6 38 38 H 1.00903 * 111.00413 * 303.95152 * 9 8 7 39 39 H 1.09004 * 109.47294 * 60.00084 * 12 10 9 40 40 H 1.09004 * 109.46612 * 180.02562 * 12 10 9 41 41 H 1.08993 * 109.47072 * 299.99555 * 12 10 9 42 42 H 1.09001 * 109.47107 * 175.00056 * 13 10 9 43 43 H 1.09002 * 109.47010 * 295.00780 * 13 10 9 44 44 H 0.97002 * 120.00185 * 359.97438 * 14 13 10 45 45 H 1.08993 * 109.47486 * 299.99855 * 17 15 14 46 46 H 1.09004 * 109.47386 * 60.00338 * 17 15 14 47 47 H 0.96994 * 119.99909 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8078 -1.8070 1.2579 6 7 3.0278 -2.1190 2.5474 7 6 2.4125 -1.2503 3.2981 8 6 2.4050 -1.2420 4.8051 9 7 3.5328 -0.4390 5.2959 10 6 3.5571 -0.4078 6.7645 11 1 2.5357 -0.4049 7.1447 12 6 4.2932 -1.6424 7.2887 13 6 4.2803 0.8555 7.2358 14 7 3.6470 2.0330 6.6369 15 6 4.1195 3.2650 6.9110 16 8 5.0688 3.3990 7.6540 17 6 3.4684 4.4762 6.2945 18 16 4.3239 5.9706 6.8522 19 6 3.3838 7.1959 6.0038 20 1 2.5586 6.9020 5.3721 21 6 3.7038 8.5389 6.1474 22 7 3.0012 9.4542 5.5140 23 14 5.1306 9.0473 7.2406 24 1 6.3786 9.0917 6.4369 25 1 4.8619 10.3913 7.8121 26 1 5.2858 8.0631 8.3417 27 8 1.7920 -0.3625 2.5098 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 3.1863 -2.3417 0.3994 36 1 1.4695 -0.8105 5.1613 37 1 2.4980 -2.2632 5.1745 38 1 4.4076 -0.7804 4.9267 39 1 5.3147 -1.6452 6.9083 40 1 4.3108 -1.6194 8.3783 41 1 3.7780 -2.5423 6.9529 42 1 4.2212 0.9241 8.3221 43 1 5.3259 0.8108 6.9309 44 1 2.8880 1.9258 6.0424 45 1 3.5276 4.4072 5.2084 46 1 2.4229 4.5214 6.5993 47 1 3.2246 10.3927 5.6147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662169426.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:36 Heat of formation + Delta-G solvation = -56.912014 kcal Electronic energy + Delta-G solvation = -26710.172926 eV Core-core repulsion = 22826.236642 eV Total energy + Delta-G solvation = -3883.936283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.33788 -40.64410 -38.61682 -36.69160 -35.75438 -35.21133 -34.66788 -32.86028 -30.96668 -29.83398 -28.11999 -27.88860 -27.01333 -26.37603 -23.73392 -22.82650 -22.09867 -21.63534 -21.24653 -19.85384 -18.24606 -17.80769 -17.72892 -17.30889 -17.04716 -16.84306 -16.49993 -16.10229 -15.95040 -15.60923 -15.34160 -15.22832 -14.91550 -14.58253 -14.28686 -14.27660 -14.06201 -13.76350 -13.58617 -13.35137 -13.23951 -13.19354 -13.12888 -12.99459 -12.69705 -12.59082 -12.50974 -12.31970 -12.20951 -12.00523 -11.92354 -11.85142 -11.49332 -11.16840 -10.97022 -10.53271 -10.02679 -9.77554 -9.52157 -8.98867 -8.51330 -6.21931 0.42245 1.00241 1.31680 1.47598 1.57202 1.60205 1.63088 1.70524 2.24899 2.33390 2.73489 2.86805 2.90941 3.26949 3.61177 3.80555 3.88974 3.92676 4.05487 4.09002 4.09226 4.23663 4.27501 4.30366 4.40642 4.45136 4.48051 4.66585 4.70637 4.74773 4.80698 4.82056 4.87803 4.88540 4.95671 4.96293 5.14663 5.26648 5.27627 5.31223 5.34486 5.50136 5.71080 5.82515 6.11475 6.18306 6.57526 6.72229 6.93814 7.27582 8.61268 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009429 B = 0.002615 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.983578 B =10703.417818 C =13278.659803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.008 4.008 3 C -0.151 4.151 4 C -0.037 4.037 5 C -0.059 4.059 6 N -0.500 5.500 7 C 0.182 3.818 8 C 0.160 3.840 9 N -0.690 5.690 10 C 0.087 3.913 11 H 0.108 0.892 12 C -0.176 4.176 13 C 0.131 3.869 14 N -0.698 5.698 15 C 0.532 3.468 16 O -0.568 6.568 17 C -0.110 4.110 18 S -0.174 6.174 19 C -0.529 4.529 20 H 0.060 0.940 21 C 0.045 3.955 22 N -0.918 5.918 23 Si 0.915 3.085 24 H -0.263 1.263 25 H -0.258 1.258 26 H -0.236 1.236 27 O -0.204 6.204 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.127 0.873 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.203 0.797 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.350 0.650 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.416 0.584 45 H 0.106 0.894 46 H 0.112 0.888 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.988 -29.254 -7.662 30.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 C -0.208 4.208 4 C -0.091 4.091 5 C -0.197 4.197 6 N -0.230 5.230 7 C -0.025 4.025 8 C 0.030 3.970 9 N -0.324 5.324 10 C -0.023 4.023 11 H 0.126 0.874 12 C -0.235 4.235 13 C 0.006 3.994 14 N -0.351 5.351 15 C 0.317 3.683 16 O -0.447 6.447 17 C -0.261 4.261 18 S 0.052 5.948 19 C -0.677 4.677 20 H 0.079 0.921 21 C -0.160 4.160 22 N -0.556 5.556 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.182 1.182 26 H -0.160 1.160 27 O -0.090 6.090 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.145 0.855 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.220 0.780 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.169 0.831 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.253 0.747 45 H 0.124 0.876 46 H 0.130 0.870 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.496 -28.743 -6.273 29.627 hybrid contribution -0.961 0.272 -1.185 1.550 sum -4.457 -28.471 -7.458 29.768 Atomic orbital electron populations 1.21866 0.92872 1.02646 1.03018 1.19942 0.96990 0.95690 0.89983 1.21885 1.01215 0.94769 1.02924 1.24023 1.02252 0.98620 0.84156 1.23471 1.02647 0.98348 0.95277 1.70405 1.22163 1.27298 1.03135 1.26560 0.93780 0.85507 0.96650 1.20373 0.97248 0.99488 0.79845 1.60444 1.06759 1.56663 1.08496 1.21758 1.01393 0.93056 0.86063 0.87355 1.22378 1.00884 0.97152 1.03107 1.21474 0.96808 0.83459 0.97626 1.45577 1.35697 1.04031 1.49789 1.19903 0.83045 0.84778 0.80564 1.90677 1.29189 1.86631 1.38245 1.23252 1.03924 0.94306 1.04633 1.84661 1.46533 0.99027 1.64552 1.22465 1.18816 0.93570 1.32803 0.92138 1.25575 0.98772 0.95417 0.96236 1.70017 1.40979 1.01823 1.42747 0.85859 0.79649 0.79857 0.80956 1.18731 1.18224 1.16008 1.84399 1.59399 1.48140 1.17053 0.93487 0.91890 0.89746 0.85472 0.93742 0.92788 0.89699 0.78038 0.86522 0.88922 0.83059 0.92280 0.90563 0.90743 0.90979 0.92829 0.74712 0.87584 0.87025 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.18 71.98 0.66 -0.99 16 2 C -0.01 -0.09 3.33 -11.54 -0.04 -0.13 16 3 C -0.15 -2.22 9.18 71.98 0.66 -1.56 16 4 C -0.04 -0.66 5.89 24.79 0.15 -0.52 16 5 C -0.06 -1.07 11.79 83.40 0.98 -0.08 16 6 N -0.50 -10.42 11.29 -303.82 -3.43 -13.85 16 7 C 0.18 3.43 7.86 88.34 0.69 4.13 16 8 C 0.16 1.89 6.11 85.56 0.52 2.42 16 9 N -0.69 -9.27 5.68 -495.58 -2.81 -12.08 16 10 C 0.09 0.98 2.75 44.92 0.12 1.11 16 11 H 0.11 0.90 7.80 -2.39 -0.02 0.88 16 12 C -0.18 -1.52 9.16 71.98 0.66 -0.86 16 13 C 0.13 2.54 5.37 86.38 0.46 3.01 16 14 N -0.70 -17.10 5.39 -463.05 -2.50 -19.59 16 15 C 0.53 18.93 7.85 87.66 0.69 19.61 16 16 O -0.57 -24.82 15.86 -3.05 -0.05 -24.87 16 17 C -0.11 -4.34 6.16 71.23 0.44 -3.90 16 18 S -0.17 -9.02 18.55 -56.49 -1.05 -10.07 16 19 C -0.53 -31.39 10.04 67.95 0.68 -30.70 16 20 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 21 C 0.05 2.70 5.50 84.86 0.47 3.16 16 22 N -0.92 -56.51 13.97 21.65 0.30 -56.20 16 23 Si 0.91 45.59 27.74 68.60 1.90 47.50 16 24 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 26 H -0.24 -11.75 6.74 99.48 0.67 -11.07 16 27 O -0.20 -4.32 10.77 -3.68 -0.04 -4.36 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.13 0.94 8.11 -2.39 -0.02 0.92 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.12 1.04 8.05 -2.39 -0.02 1.03 16 37 H 0.09 0.81 7.44 -2.39 -0.02 0.79 16 38 H 0.35 5.24 8.47 -89.69 -0.76 4.48 16 39 H 0.06 0.60 8.13 -2.38 -0.02 0.58 16 40 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.07 0.49 7.45 -2.39 -0.02 0.47 16 42 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 43 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.42 8.45 8.14 -92.71 -0.75 7.70 16 45 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 46 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 47 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -78.52 407.90 -1.09 -79.61 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.57 Total: 19.23 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 7.15 Total: -5.31 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -8.44 Total: -101.73 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.09 Total: -29.23 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.50 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -78.52 -1.09 -79.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662169426.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.702 kcal (2) G-P(sol) polarization free energy of solvation -78.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds