Wall clock time and date at job start Wed Apr 1 2020 01:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47404 * 2 1 4 4 C 1.46895 * 111.00026 * 57.16935 * 3 2 1 5 5 C 1.53002 * 109.47039 * 66.04943 * 4 3 2 6 6 N 1.46502 * 109.46993 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00023 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99553 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00222 * 180.02562 * 7 6 5 10 10 S 1.80996 * 109.46982 * 180.02562 * 9 7 6 11 11 C 1.76208 * 99.99913 * 179.97438 * 10 9 7 12 12 H 1.08007 * 119.99689 * 359.97438 * 11 10 9 13 13 C 1.38793 * 120.00348 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99545 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00280 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47246 * 60.00044 * 15 13 11 17 17 H 1.48504 * 109.47121 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46869 * 299.99899 * 15 13 11 19 19 C 1.46904 * 110.99880 * 293.21900 * 3 2 1 20 20 C 1.50703 * 109.46853 * 288.10389 * 19 3 2 21 21 N 1.34472 * 126.16454 * 276.54561 * 20 19 3 22 22 C 1.30255 * 108.70176 * 179.82993 * 21 20 19 23 23 C 1.50702 * 125.62404 * 180.19401 * 22 21 20 24 24 O 1.33976 * 108.75994 * 0.43643 * 22 21 20 25 25 C 1.34332 * 126.16517 * 96.85940 * 20 19 3 26 26 C 1.50703 * 126.44428 * 359.97438 * 25 20 19 27 27 H 1.09000 * 109.46966 * 300.80521 * 1 2 3 28 28 H 1.08994 * 109.47357 * 60.80190 * 1 2 3 29 29 H 1.09001 * 109.47270 * 180.81290 * 1 2 3 30 30 H 1.08996 * 109.47374 * 239.99687 * 2 1 3 31 31 H 1.09000 * 109.47324 * 119.99737 * 2 1 3 32 32 H 1.09007 * 109.47489 * 186.04862 * 4 3 2 33 33 H 1.08997 * 109.47301 * 306.04660 * 4 3 2 34 34 H 1.08992 * 109.46993 * 299.99805 * 5 4 3 35 35 H 1.09001 * 109.46853 * 60.00296 * 5 4 3 36 36 H 0.97002 * 119.99907 * 0.02562 * 6 5 4 37 37 H 1.09006 * 109.46892 * 299.99935 * 9 7 6 38 38 H 1.08997 * 109.47229 * 59.99720 * 9 7 6 39 39 H 0.97010 * 119.99768 * 179.97438 * 14 13 11 40 40 H 1.09002 * 109.47291 * 48.10041 * 19 3 2 41 41 H 1.08991 * 109.47470 * 168.10497 * 19 3 2 42 42 H 1.08998 * 109.47112 * 180.31498 * 23 22 21 43 43 H 1.09005 * 109.46930 * 300.30985 * 23 22 21 44 44 H 1.09002 * 109.47246 * 60.30654 * 23 22 21 45 45 H 1.09001 * 109.47174 * 95.60551 * 26 25 20 46 46 H 1.09001 * 109.47020 * 215.60519 * 26 25 20 47 47 H 1.08999 * 109.46855 * 335.60187 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4942 2.1292 1.1523 5 6 2.0666 1.5407 2.4435 6 7 1.5431 2.2833 3.5927 7 6 1.9125 1.9393 4.8424 8 8 2.6787 1.0153 5.0154 9 6 1.3734 2.7028 6.0246 10 16 2.0507 2.0067 7.5519 11 6 1.2779 3.0579 8.7363 12 1 0.6137 3.8440 8.4085 13 6 1.5228 2.8759 10.0902 14 7 2.3328 1.9182 10.4896 15 14 0.7041 3.9907 11.3457 16 1 -0.7712 3.8688 11.2284 17 1 1.1272 3.5919 12.7122 18 1 1.1061 5.3981 11.0945 19 6 1.6854 2.0615 -1.2604 20 6 2.5450 1.5113 -2.3692 21 7 3.7985 1.8965 -2.6671 22 6 4.2202 1.1972 -3.6819 23 6 5.5772 1.3162 -4.3267 24 8 3.2469 0.3585 -4.0615 25 6 2.1951 0.5517 -3.2417 26 6 0.8747 -0.1728 -3.2936 27 1 -0.3633 0.5263 0.8827 28 1 -0.3634 0.5013 -0.8970 29 1 -0.3634 -1.0276 0.0146 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.7837 3.1769 1.0710 33 1 0.4071 2.0529 1.1690 34 1 1.7771 0.4931 2.5249 35 1 3.1539 1.6171 2.4268 36 1 0.9299 3.0221 3.4542 37 1 1.6633 3.7504 5.9433 38 1 0.2862 2.6269 6.0411 39 1 2.5042 1.7911 11.4359 40 1 0.6350 1.8915 -1.4966 41 1 1.8661 3.1314 -1.1575 42 1 5.6486 0.6120 -5.1556 43 1 5.7145 2.3313 -4.6994 44 1 6.3498 1.0916 -3.5913 45 1 0.2230 0.3112 -4.0211 46 1 1.0403 -1.2094 -3.5872 47 1 0.4057 -0.1443 -2.3101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663359326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:55 Heat of formation + Delta-G solvation = -10.397778 kcal Electronic energy + Delta-G solvation = -26565.577046 eV Core-core repulsion = 22683.657772 eV Total energy + Delta-G solvation = -3881.919275 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.67914 -39.45379 -38.57444 -35.28747 -34.55727 -33.49791 -32.40957 -31.27143 -30.38642 -30.24415 -28.47168 -26.31819 -25.44636 -25.09534 -23.70144 -22.00128 -21.05711 -20.49786 -20.00762 -17.80184 -17.36407 -16.92617 -16.52244 -16.39965 -16.10030 -15.64558 -15.08569 -14.94583 -14.78821 -14.59965 -14.24783 -13.92672 -13.90643 -13.75315 -13.48093 -13.18179 -13.06166 -13.00145 -12.85108 -12.66602 -12.54572 -12.30111 -12.05043 -11.96858 -11.70104 -11.49305 -11.29596 -11.02784 -11.02586 -10.95046 -10.75550 -10.69300 -9.80706 -9.38538 -9.04513 -8.90832 -8.83266 -8.62118 -8.21487 -6.47753 -6.19582 -3.90134 1.07659 2.26237 2.32310 3.01386 3.14439 3.24766 3.27729 3.30706 3.54910 3.66209 3.97616 4.22360 4.29653 4.42447 4.55373 4.59758 4.66632 4.75480 4.85461 4.91633 4.92357 4.98071 5.02195 5.06743 5.09345 5.15344 5.19911 5.22504 5.26700 5.32657 5.48826 5.60277 5.62981 5.64579 5.72388 5.81605 5.86865 5.93213 5.97650 6.04309 6.16150 6.57048 6.65284 6.75207 7.47849 7.60952 7.73857 8.36824 8.65563 9.25437 10.87762 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027659 B = 0.001650 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.085758 B =16966.340553 C =17355.373447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.039 3.961 3 N -0.524 5.524 4 C 0.042 3.958 5 C 0.125 3.875 6 N -0.739 5.739 7 C 0.532 3.468 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.133 3.867 20 C 0.005 3.995 21 N -0.463 5.463 22 C 0.184 3.816 23 C -0.055 4.055 24 O -0.203 6.203 25 C -0.048 4.048 26 C -0.081 4.081 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.397 0.603 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.058 0.942 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.461 -1.358 -33.466 33.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.089 4.089 3 N -0.247 5.247 4 C -0.086 4.086 5 C 0.001 3.999 6 N -0.394 5.394 7 C 0.318 3.682 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.199 1.199 19 C 0.006 3.994 20 C -0.116 4.116 21 N -0.193 5.193 22 C -0.023 4.023 23 C -0.112 4.112 24 O -0.091 6.091 25 C -0.102 4.102 26 C -0.137 4.137 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.230 0.770 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.188 -2.583 -32.712 32.835 hybrid contribution -2.930 1.632 0.081 3.355 sum -4.118 -0.951 -32.631 32.903 Atomic orbital electron populations 1.22557 0.98088 1.03054 1.02186 1.22344 0.92939 0.90040 1.03594 1.61947 1.59526 1.02219 1.01052 1.22326 0.97929 0.98490 0.89861 1.21159 0.99701 0.95814 0.83227 1.45912 1.50737 1.37065 1.05714 1.20278 0.80661 0.83959 0.83279 1.90708 1.34103 1.29065 1.85150 1.23527 1.04320 1.03182 0.99331 1.85411 1.61576 1.44756 0.91593 1.22833 1.32938 1.19626 0.93048 0.90985 1.24990 0.95146 0.95771 0.97675 1.70015 1.33856 1.30067 1.16341 0.86225 0.79499 0.80301 0.79470 1.19966 1.20815 1.19948 1.20306 0.94487 0.98854 0.85799 1.21200 0.92725 0.98312 0.99358 1.70320 1.10534 1.25577 1.12825 1.26261 0.93202 0.88773 0.94082 1.20238 0.85733 1.04552 1.00718 1.84377 1.21865 1.52841 1.50047 1.23135 0.91113 1.01864 0.94097 1.20550 0.88382 1.00002 1.04760 0.91490 0.92336 0.91457 0.90677 0.89633 0.89914 0.93317 0.91656 0.90726 0.76993 0.89202 0.89274 0.92141 0.92435 0.88955 0.89557 0.88564 0.88404 0.89934 0.90134 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.28 8.35 37.16 0.31 -0.97 16 2 C 0.04 0.32 5.26 -3.83 -0.02 0.30 16 3 N -0.52 -4.91 4.66 -236.08 -1.10 -6.01 16 4 C 0.04 0.37 4.77 -3.83 -0.02 0.35 16 5 C 0.13 1.54 5.60 -4.04 -0.02 1.52 16 6 N -0.74 -9.95 5.56 -60.29 -0.33 -10.28 16 7 C 0.53 10.11 7.85 -10.98 -0.09 10.02 16 8 O -0.52 -12.04 15.86 5.56 0.09 -11.96 16 9 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 12 H 0.07 1.94 7.80 -52.48 -0.41 1.54 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.34 13.22 55.49 0.73 -25.60 16 15 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 C 0.13 1.13 5.12 -4.97 -0.03 1.10 16 20 C 0.00 0.05 6.01 -82.81 -0.50 -0.45 16 21 N -0.46 -5.43 11.29 -7.35 -0.08 -5.51 16 22 C 0.18 1.75 8.34 -12.95 -0.11 1.64 16 23 C -0.06 -0.27 10.51 36.01 0.38 0.11 16 24 O -0.20 -1.99 10.78 5.35 0.06 -1.93 16 25 C -0.05 -0.43 6.67 -35.69 -0.24 -0.67 16 26 C -0.08 -0.42 9.60 36.01 0.35 -0.07 16 27 H 0.07 0.48 6.18 -51.93 -0.32 0.16 16 28 H 0.06 0.30 4.74 -51.93 -0.25 0.06 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.63 5.68 -51.93 -0.29 0.34 16 31 H 0.09 0.82 6.61 -51.93 -0.34 0.48 16 32 H 0.08 0.69 7.86 -51.93 -0.41 0.28 16 33 H 0.05 0.37 5.91 -51.93 -0.31 0.06 16 34 H 0.07 0.86 6.61 -51.93 -0.34 0.51 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.40 4.03 8.47 -40.82 -0.35 3.68 16 37 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 38 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 39 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.06 0.37 5.45 -51.93 -0.28 0.09 16 41 H 0.09 0.79 7.81 -51.93 -0.41 0.38 16 42 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.10 0.45 3.34 -51.93 -0.17 0.27 16 LS Contribution 390.10 15.07 5.88 5.88 Total: -1.00 -37.47 390.10 -8.38 -45.85 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.82 Total: 0.03 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 0.44 Total: -3.08 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.78 Total: -47.40 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.15 Total: -13.89 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.47 -8.38 -45.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663359326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.448 kcal (2) G-P(sol) polarization free energy of solvation -37.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds