Wall clock time and date at job start Wed Apr 1 2020 01:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47404 * 2 1 4 4 C 1.46895 * 111.00026 * 57.16935 * 3 2 1 5 5 C 1.53002 * 109.47039 * 66.04943 * 4 3 2 6 6 N 1.46502 * 109.46993 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00023 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99553 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00222 * 180.02562 * 7 6 5 10 10 S 1.80996 * 109.46982 * 180.02562 * 9 7 6 11 11 C 1.76208 * 99.99913 * 179.97438 * 10 9 7 12 12 H 1.08007 * 119.99689 * 359.97438 * 11 10 9 13 13 C 1.38793 * 120.00348 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99545 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00280 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47246 * 60.00044 * 15 13 11 17 17 H 1.48504 * 109.47121 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46869 * 299.99899 * 15 13 11 19 19 C 1.46904 * 110.99880 * 293.21900 * 3 2 1 20 20 C 1.50703 * 109.46853 * 288.10389 * 19 3 2 21 21 N 1.34472 * 126.16454 * 276.54561 * 20 19 3 22 22 C 1.30255 * 108.70176 * 179.82993 * 21 20 19 23 23 C 1.50702 * 125.62404 * 180.19401 * 22 21 20 24 24 O 1.33976 * 108.75994 * 0.43643 * 22 21 20 25 25 C 1.34332 * 126.16517 * 96.85940 * 20 19 3 26 26 C 1.50703 * 126.44428 * 359.97438 * 25 20 19 27 27 H 1.09000 * 109.46966 * 300.80521 * 1 2 3 28 28 H 1.08994 * 109.47357 * 60.80190 * 1 2 3 29 29 H 1.09001 * 109.47270 * 180.81290 * 1 2 3 30 30 H 1.08996 * 109.47374 * 239.99687 * 2 1 3 31 31 H 1.09000 * 109.47324 * 119.99737 * 2 1 3 32 32 H 1.09007 * 109.47489 * 186.04862 * 4 3 2 33 33 H 1.08997 * 109.47301 * 306.04660 * 4 3 2 34 34 H 1.08992 * 109.46993 * 299.99805 * 5 4 3 35 35 H 1.09001 * 109.46853 * 60.00296 * 5 4 3 36 36 H 0.97002 * 119.99907 * 0.02562 * 6 5 4 37 37 H 1.09006 * 109.46892 * 299.99935 * 9 7 6 38 38 H 1.08997 * 109.47229 * 59.99720 * 9 7 6 39 39 H 0.97010 * 119.99768 * 179.97438 * 14 13 11 40 40 H 1.09002 * 109.47291 * 48.10041 * 19 3 2 41 41 H 1.08991 * 109.47470 * 168.10497 * 19 3 2 42 42 H 1.08998 * 109.47112 * 180.31498 * 23 22 21 43 43 H 1.09005 * 109.46930 * 300.30985 * 23 22 21 44 44 H 1.09002 * 109.47246 * 60.30654 * 23 22 21 45 45 H 1.09001 * 109.47174 * 95.60551 * 26 25 20 46 46 H 1.09001 * 109.47020 * 215.60519 * 26 25 20 47 47 H 1.08999 * 109.46855 * 335.60187 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4942 2.1292 1.1523 5 6 2.0666 1.5407 2.4435 6 7 1.5431 2.2833 3.5927 7 6 1.9125 1.9393 4.8424 8 8 2.6787 1.0153 5.0154 9 6 1.3734 2.7028 6.0246 10 16 2.0507 2.0067 7.5519 11 6 1.2779 3.0579 8.7363 12 1 0.6137 3.8440 8.4085 13 6 1.5228 2.8759 10.0902 14 7 2.3328 1.9182 10.4896 15 14 0.7041 3.9907 11.3457 16 1 -0.7712 3.8688 11.2284 17 1 1.1272 3.5919 12.7122 18 1 1.1061 5.3981 11.0945 19 6 1.6854 2.0615 -1.2604 20 6 2.5450 1.5113 -2.3692 21 7 3.7985 1.8965 -2.6671 22 6 4.2202 1.1972 -3.6819 23 6 5.5772 1.3162 -4.3267 24 8 3.2469 0.3585 -4.0615 25 6 2.1951 0.5517 -3.2417 26 6 0.8747 -0.1728 -3.2936 27 1 -0.3633 0.5263 0.8827 28 1 -0.3634 0.5013 -0.8970 29 1 -0.3634 -1.0276 0.0146 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.7837 3.1769 1.0710 33 1 0.4071 2.0529 1.1690 34 1 1.7771 0.4931 2.5249 35 1 3.1539 1.6171 2.4268 36 1 0.9299 3.0221 3.4542 37 1 1.6633 3.7504 5.9433 38 1 0.2862 2.6269 6.0411 39 1 2.5042 1.7911 11.4359 40 1 0.6350 1.8915 -1.4966 41 1 1.8661 3.1314 -1.1575 42 1 5.6486 0.6120 -5.1556 43 1 5.7145 2.3313 -4.6994 44 1 6.3498 1.0916 -3.5913 45 1 0.2230 0.3112 -4.0211 46 1 1.0403 -1.2094 -3.5872 47 1 0.4057 -0.1443 -2.3101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663359326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:54 Heat of formation + Delta-G solvation = -40.808511 kcal Electronic energy + Delta-G solvation = -26566.895755 eV Core-core repulsion = 22683.657772 eV Total energy + Delta-G solvation = -3883.237983 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.34562 -40.71614 -39.52479 -36.19191 -35.57606 -34.57465 -34.16063 -32.01514 -31.48591 -30.76145 -29.61136 -27.68358 -27.00966 -25.66878 -24.52424 -22.71692 -21.86003 -21.76734 -20.81684 -19.78869 -18.09226 -17.80755 -17.60580 -17.31739 -17.16417 -16.86819 -16.61101 -16.36157 -15.83609 -15.57638 -15.25252 -14.89580 -14.73207 -14.64693 -14.41219 -14.25463 -14.14996 -13.58218 -13.55960 -13.42563 -13.38956 -13.16082 -13.14394 -12.86060 -12.81202 -12.76780 -12.58335 -12.52405 -12.31784 -11.99367 -11.74326 -11.66379 -11.40266 -11.11940 -10.99395 -10.26884 -10.12401 -9.53905 -9.26943 -8.66208 -8.33450 -6.11966 0.43125 1.26659 1.44874 1.46321 1.54584 1.60912 1.61443 1.74437 2.21704 2.28963 3.00543 3.03916 3.13334 3.34989 3.74025 3.79836 3.80496 3.98106 4.03110 4.09532 4.17223 4.25983 4.32119 4.36785 4.40730 4.42074 4.51913 4.54068 4.59510 4.63485 4.64621 4.78345 4.84545 4.85775 4.90759 5.00079 5.02907 5.09502 5.18010 5.36974 5.39344 5.40133 5.42555 5.98241 6.02546 6.20604 6.51006 6.80425 7.07516 7.25054 8.75534 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027659 B = 0.001650 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.085758 B =16966.340553 C =17355.373447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.041 3.959 3 N -0.543 5.543 4 C 0.054 3.946 5 C 0.130 3.870 6 N -0.710 5.710 7 C 0.533 3.467 8 O -0.568 6.568 9 C -0.128 4.128 10 S -0.155 6.155 11 C -0.547 4.547 12 H 0.084 0.916 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 0.999 3.001 16 H -0.261 1.261 17 H -0.279 1.279 18 H -0.262 1.262 19 C 0.139 3.861 20 C -0.020 4.020 21 N -0.503 5.503 22 C 0.175 3.825 23 C -0.054 4.054 24 O -0.214 6.214 25 C -0.050 4.050 26 C -0.079 4.079 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.418 0.582 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.271 0.729 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.806 0.155 -35.045 35.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.087 4.087 3 N -0.268 5.268 4 C -0.074 4.074 5 C 0.005 3.995 6 N -0.365 5.365 7 C 0.319 3.681 8 O -0.446 6.446 9 C -0.279 4.279 10 S 0.072 5.928 11 C -0.694 4.694 12 H 0.102 0.898 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.187 1.187 19 C 0.011 3.989 20 C -0.140 4.140 21 N -0.234 5.234 22 C -0.031 4.031 23 C -0.111 4.111 24 O -0.102 6.102 25 C -0.103 4.103 26 C -0.135 4.135 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.255 0.745 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.107 0.893 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.572 -1.035 -34.346 34.546 hybrid contribution -2.160 1.135 0.405 2.474 sum -5.732 0.100 -33.941 34.422 Atomic orbital electron populations 1.22496 0.96166 1.03776 1.02772 1.22273 0.94484 0.89410 1.02512 1.61845 1.60564 1.02753 1.01606 1.22198 0.98924 0.98461 0.87799 1.21170 0.98418 0.95634 0.84258 1.45590 1.49711 1.36965 1.04194 1.20092 0.80216 0.83244 0.84521 1.90699 1.36585 1.31335 1.85986 1.23361 1.05147 1.03644 0.95752 1.85624 1.63510 1.46990 0.96628 1.23182 1.33003 1.19725 0.93536 0.89769 1.26146 0.95628 0.97342 1.00107 1.70190 1.35587 1.32164 1.16872 0.84991 0.78712 0.78114 0.76093 1.18552 1.20461 1.18676 1.20321 0.95426 0.98356 0.84773 1.21532 0.92750 0.99304 1.00424 1.70302 1.11772 1.27069 1.14213 1.27089 0.94230 0.88090 0.93733 1.20454 0.83562 1.05898 1.01219 1.84390 1.22315 1.53049 1.50432 1.23765 0.91856 1.01442 0.93285 1.20711 0.86781 1.00250 1.05761 0.91906 0.90605 0.90736 0.90943 0.91586 0.88946 0.91002 0.92489 0.93211 0.74488 0.87095 0.86898 0.92020 0.90061 0.89273 0.87549 0.87366 0.88021 0.88119 0.89291 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 8.35 71.98 0.60 -1.41 16 2 C 0.04 0.65 5.26 86.30 0.45 1.10 16 3 N -0.54 -9.60 4.66 -900.81 -4.20 -13.80 16 4 C 0.05 0.85 4.77 86.30 0.41 1.26 16 5 C 0.13 3.10 5.60 86.38 0.48 3.58 16 6 N -0.71 -17.94 5.56 -463.06 -2.57 -20.51 16 7 C 0.53 20.02 7.85 87.66 0.69 20.71 16 8 O -0.57 -27.24 15.86 -3.03 -0.05 -27.28 16 9 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 10 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 11 C -0.55 -31.32 9.50 67.95 0.65 -30.68 16 12 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 13 C 0.01 0.71 5.49 84.86 0.47 1.18 16 14 N -0.91 -56.44 13.22 21.65 0.29 -56.16 16 15 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 16 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 17 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 19 C 0.14 2.13 5.12 85.56 0.44 2.56 16 20 C -0.02 -0.40 6.01 41.26 0.25 -0.15 16 21 N -0.50 -11.82 11.29 -291.97 -3.30 -15.12 16 22 C 0.18 3.29 8.34 88.34 0.74 4.03 16 23 C -0.05 -0.50 10.51 71.24 0.75 0.25 16 24 O -0.21 -4.06 10.78 -3.79 -0.04 -4.10 16 25 C -0.05 -0.83 6.67 24.79 0.17 -0.67 16 26 C -0.08 -0.65 9.60 71.24 0.68 0.04 16 27 H 0.06 0.72 6.18 -2.39 -0.01 0.71 16 28 H 0.08 0.52 4.74 -2.39 -0.01 0.51 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 1.17 5.68 -2.39 -0.01 1.16 16 31 H 0.07 1.28 6.61 -2.39 -0.02 1.27 16 32 H 0.09 1.31 7.86 -2.38 -0.02 1.30 16 33 H 0.07 0.84 5.91 -2.39 -0.01 0.82 16 34 H 0.06 1.50 6.61 -2.39 -0.02 1.48 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.42 7.17 8.47 -92.71 -0.79 6.38 16 37 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 38 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 39 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 40 H 0.08 0.81 5.45 -2.39 -0.01 0.80 16 41 H 0.09 1.40 7.81 -2.39 -0.02 1.38 16 42 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.11 0.68 3.34 -2.39 -0.01 0.67 16 Total: -1.00 -85.06 390.10 -1.57 -86.63 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.22 Total: 17.32 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 7.21 Total: -2.81 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -9.78 Total: -105.59 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.09 Total: -31.38 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -85.06 -1.57 -86.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663359326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.825 kcal (2) G-P(sol) polarization free energy of solvation -85.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds