Wall clock time and date at job start Wed Apr 1 2020 00:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47285 * 2 1 4 4 C 1.50700 * 109.47626 * 120.00392 * 2 1 3 5 5 O 1.34753 * 126.43953 * 299.97449 * 4 2 1 6 6 C 1.33970 * 107.75658 * 180.02562 * 5 4 2 7 7 N 1.30256 * 108.75661 * 0.26839 * 6 5 4 8 8 C 1.34324 * 126.44813 * 120.00003 * 4 2 1 9 9 C 1.50699 * 126.16544 * 359.97438 * 8 4 2 10 10 N 1.46904 * 109.46716 * 90.00333 * 9 8 4 11 11 C 1.46896 * 111.00064 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47442 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.47080 * 65.00253 * 12 11 10 14 14 C 1.53006 * 109.47460 * 185.00032 * 12 11 10 15 15 N 1.46502 * 109.47332 * 305.00232 * 12 11 10 16 16 C 1.34775 * 120.00241 * 154.99731 * 15 12 11 17 17 O 1.21273 * 120.00019 * 0.02562 * 16 15 12 18 18 C 1.50699 * 119.99768 * 180.02562 * 16 15 12 19 19 S 1.81001 * 109.46917 * 179.97438 * 18 16 15 20 20 C 1.76203 * 100.00026 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99833 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00082 * 179.97438 * 20 19 18 23 23 N 1.31633 * 120.00039 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00113 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47087 * 60.00304 * 24 22 20 26 26 H 1.48500 * 109.46960 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46841 * 300.00257 * 24 22 20 28 28 H 1.08996 * 109.47548 * 60.00256 * 1 2 3 29 29 H 1.09008 * 109.47171 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47049 * 299.99832 * 1 2 3 31 31 H 1.09001 * 109.47049 * 240.00168 * 2 1 3 32 32 H 1.08993 * 109.47537 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47288 * 300.00438 * 3 2 1 34 34 H 1.09001 * 109.46940 * 60.00101 * 3 2 1 35 35 H 1.08002 * 125.61757 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47358 * 209.99812 * 9 8 4 37 37 H 1.08997 * 109.47092 * 330.00888 * 9 8 4 38 38 H 1.00899 * 111.00155 * 303.95713 * 10 9 8 39 39 H 1.09002 * 109.47599 * 299.99991 * 11 10 9 40 40 H 1.09002 * 109.47567 * 60.00169 * 11 10 9 41 41 H 1.09003 * 109.46794 * 60.00045 * 14 12 11 42 42 H 1.08995 * 109.47036 * 180.02562 * 14 12 11 43 43 H 1.09001 * 109.46774 * 299.99697 * 14 12 11 44 44 H 0.97000 * 119.99597 * 334.99550 * 15 12 11 45 45 H 1.09001 * 109.46827 * 299.99318 * 18 16 15 46 46 H 1.09002 * 109.47495 * 59.99656 * 18 16 15 47 47 H 0.97003 * 120.00023 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.7886 -0.3649 2.5098 6 6 2.4144 -1.2491 3.2982 7 7 3.0335 -2.1149 2.5474 8 6 2.8078 -1.8070 1.2580 9 6 3.3351 -2.5536 0.0599 10 7 4.6374 -1.9966 -0.3299 11 6 5.1836 -2.7019 -1.4970 12 6 6.5373 -2.0954 -1.8719 13 1 7.2507 -2.2738 -1.0673 14 6 7.0481 -2.7449 -3.1597 15 7 6.3857 -0.6531 -2.0793 16 6 7.4442 0.1657 -1.9194 17 8 8.5224 -0.2916 -1.6044 18 6 7.2880 1.6494 -2.1322 19 16 8.8751 2.4705 -1.8438 20 6 8.4149 4.1430 -2.1534 21 1 7.3980 4.3813 -2.4281 22 6 9.3591 5.1543 -2.0431 23 7 10.5984 4.8640 -1.7077 24 14 8.8711 6.9275 -2.3706 25 1 7.8019 7.3300 -1.4218 26 1 10.0526 7.8081 -2.1866 27 1 8.3707 7.0540 -3.7630 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.4104 -1.2420 4.3782 36 1 3.4515 -3.6079 0.3111 37 1 2.6341 -2.4527 -0.7686 38 1 4.5687 -1.0053 -0.5055 39 1 5.3128 -3.7571 -1.2562 40 1 4.4955 -2.6024 -2.3365 41 1 6.3347 -2.5665 -3.9643 42 1 8.0127 -2.3131 -3.4265 43 1 7.1610 -3.8180 -3.0053 44 1 5.5234 -0.2874 -2.3316 45 1 6.9619 1.8373 -3.1551 46 1 6.5454 2.0401 -1.4364 47 1 11.2582 5.5709 -1.6303 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669245517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:49 Heat of formation + Delta-G solvation = -27.367295 kcal Electronic energy + Delta-G solvation = -27290.347188 eV Core-core repulsion = 23407.692060 eV Total energy + Delta-G solvation = -3882.655128 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.61638 -39.45954 -37.33778 -36.10446 -35.39898 -33.88944 -32.41944 -31.50370 -29.97772 -28.52123 -27.60257 -26.94044 -25.47336 -24.18686 -23.74177 -21.78830 -21.41764 -20.43331 -20.26726 -17.93546 -17.47135 -16.86669 -16.66281 -16.19401 -15.95481 -15.35264 -15.26737 -15.09045 -14.80011 -14.64652 -14.21900 -14.11216 -13.85424 -13.58351 -13.22146 -13.12510 -12.75513 -12.62393 -12.59146 -12.36890 -12.26216 -11.98217 -11.93565 -11.68348 -11.66911 -11.46896 -11.32673 -11.04291 -11.03772 -10.98813 -10.75868 -10.63520 -9.81277 -9.33973 -9.05582 -9.03499 -8.89584 -8.66744 -8.21917 -6.48185 -6.20486 -3.90852 1.19060 2.39162 2.48726 3.05097 3.14777 3.23445 3.27790 3.31370 3.71150 3.81062 4.01522 4.18237 4.21377 4.38423 4.54097 4.61094 4.68851 4.80735 4.97383 5.08029 5.10972 5.14437 5.18477 5.20834 5.27636 5.34119 5.41687 5.43088 5.44224 5.50064 5.59524 5.61674 5.69626 5.71839 5.80240 5.89011 5.90147 6.02189 6.09409 6.13932 6.18358 6.63978 6.71135 7.03868 7.50467 7.59699 7.72321 8.35646 8.66637 9.24521 10.86863 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009557 B = 0.002824 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.998421 B = 9911.703180 C =11721.206378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.010 4.010 3 C -0.152 4.152 4 C -0.028 4.028 5 O -0.200 6.200 6 C 0.165 3.835 7 N -0.468 5.468 8 C -0.009 4.009 9 C 0.142 3.858 10 N -0.680 5.680 11 C 0.054 3.946 12 C 0.145 3.855 13 H 0.097 0.903 14 C -0.162 4.162 15 N -0.734 5.734 16 C 0.535 3.465 17 O -0.514 6.514 18 C -0.153 4.153 19 S -0.058 6.058 20 C -0.536 4.536 21 H 0.071 0.929 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.249 0.751 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.344 0.656 39 H 0.088 0.912 40 H 0.035 0.965 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.391 0.609 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.221 -14.529 2.220 27.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 C -0.209 4.209 4 C -0.083 4.083 5 O -0.086 6.086 6 C -0.062 4.062 7 N -0.196 5.196 8 C -0.129 4.129 9 C 0.013 3.987 10 N -0.313 5.313 11 C -0.075 4.075 12 C 0.040 3.960 13 H 0.115 0.885 14 C -0.221 4.221 15 N -0.389 5.389 16 C 0.321 3.679 17 O -0.387 6.387 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.089 0.911 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.265 0.735 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.163 0.837 39 H 0.106 0.894 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.224 0.776 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.522 -16.086 3.491 26.307 hybrid contribution -2.883 2.725 -1.341 4.187 sum -23.404 -13.361 2.150 27.035 Atomic orbital electron populations 1.21876 0.93366 1.02411 1.02926 1.19781 0.96621 0.96343 0.90122 1.21907 1.02111 0.93891 1.03019 1.23215 1.02780 0.98074 0.84206 1.84412 1.59294 1.48588 1.16326 1.28035 0.93466 0.85747 0.98953 1.70328 1.20630 1.26783 1.01867 1.21248 1.01271 0.97145 0.93231 1.20119 0.89188 0.98767 0.90660 1.60302 1.24900 1.08173 1.37900 1.22297 0.94978 0.99440 0.90793 1.20930 0.96728 0.80042 0.98328 0.88524 1.22160 1.02312 1.00600 0.97067 1.46040 1.12701 1.06913 1.73236 1.20245 0.83735 0.88124 0.75828 1.90701 1.26003 1.77075 1.44950 1.23531 1.08096 0.94160 1.04621 1.85422 1.04826 1.02199 1.90730 1.22825 0.98848 0.92169 1.54617 0.91053 1.24983 0.94482 0.99422 0.94651 1.70010 1.02146 1.33601 1.44509 0.86242 0.78089 0.82391 0.78879 1.19961 1.20804 1.19953 0.91302 0.92307 0.91953 0.88403 0.91669 0.91165 0.91890 0.73548 0.89114 0.93618 0.83716 0.89356 0.94644 0.92711 0.91352 0.91780 0.77568 0.89403 0.89420 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.18 37.15 0.34 -0.54 16 2 C -0.01 -0.07 3.27 -91.78 -0.30 -0.37 16 3 C -0.15 -1.15 9.18 37.16 0.34 -0.81 16 4 C -0.03 -0.27 5.89 -35.69 -0.21 -0.48 16 5 O -0.20 -2.00 10.78 5.35 0.06 -1.94 16 6 C 0.16 1.51 13.23 52.09 0.69 2.19 16 7 N -0.47 -5.57 11.29 -11.18 -0.13 -5.70 16 8 C -0.01 -0.10 6.62 -82.82 -0.55 -0.64 16 9 C 0.14 1.26 5.87 -4.97 -0.03 1.23 16 10 N -0.68 -6.84 6.48 -115.06 -0.75 -7.58 16 11 C 0.05 0.47 5.30 -3.83 -0.02 0.45 16 12 C 0.14 1.67 2.88 -67.93 -0.20 1.48 16 13 H 0.10 1.42 7.58 -51.93 -0.39 1.02 16 14 C -0.16 -1.71 9.48 37.16 0.35 -1.36 16 15 N -0.73 -9.41 4.36 -53.80 -0.23 -9.64 16 16 C 0.53 9.85 7.81 -10.99 -0.09 9.76 16 17 O -0.51 -11.66 15.52 5.56 0.09 -11.58 16 18 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 19 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 20 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 24 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 0.56 6.82 -51.93 -0.35 0.21 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.25 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.31 7.16 -51.93 -0.37 -0.07 16 38 H 0.34 3.50 7.57 -39.29 -0.30 3.20 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.39 3.82 8.15 -40.82 -0.33 3.49 16 45 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 46 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 408.40 15.07 6.15 6.15 Total: -1.00 -36.78 408.40 -8.19 -44.97 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.64 Total: 3.17 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 0.75 Total: -4.88 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.37 Total: -48.44 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.14 Total: -13.52 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.78 -8.19 -44.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669245517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.603 kcal (2) G-P(sol) polarization free energy of solvation -36.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds