Wall clock time and date at job start Wed Apr 1 2020 00:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47285 * 2 1 4 4 C 1.50700 * 109.47626 * 120.00392 * 2 1 3 5 5 O 1.34753 * 126.43953 * 299.97449 * 4 2 1 6 6 C 1.33970 * 107.75658 * 180.02562 * 5 4 2 7 7 N 1.30256 * 108.75661 * 0.26839 * 6 5 4 8 8 C 1.34324 * 126.44813 * 120.00003 * 4 2 1 9 9 C 1.50699 * 126.16544 * 359.97438 * 8 4 2 10 10 N 1.46904 * 109.46716 * 90.00333 * 9 8 4 11 11 C 1.46896 * 111.00064 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47442 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.47080 * 65.00253 * 12 11 10 14 14 C 1.53006 * 109.47460 * 185.00032 * 12 11 10 15 15 N 1.46502 * 109.47332 * 305.00232 * 12 11 10 16 16 C 1.34775 * 120.00241 * 154.99731 * 15 12 11 17 17 O 1.21273 * 120.00019 * 0.02562 * 16 15 12 18 18 C 1.50699 * 119.99768 * 180.02562 * 16 15 12 19 19 S 1.81001 * 109.46917 * 179.97438 * 18 16 15 20 20 C 1.76203 * 100.00026 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99833 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00082 * 179.97438 * 20 19 18 23 23 N 1.31633 * 120.00039 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00113 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47087 * 60.00304 * 24 22 20 26 26 H 1.48500 * 109.46960 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46841 * 300.00257 * 24 22 20 28 28 H 1.08996 * 109.47548 * 60.00256 * 1 2 3 29 29 H 1.09008 * 109.47171 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47049 * 299.99832 * 1 2 3 31 31 H 1.09001 * 109.47049 * 240.00168 * 2 1 3 32 32 H 1.08993 * 109.47537 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47288 * 300.00438 * 3 2 1 34 34 H 1.09001 * 109.46940 * 60.00101 * 3 2 1 35 35 H 1.08002 * 125.61757 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47358 * 209.99812 * 9 8 4 37 37 H 1.08997 * 109.47092 * 330.00888 * 9 8 4 38 38 H 1.00899 * 111.00155 * 303.95713 * 10 9 8 39 39 H 1.09002 * 109.47599 * 299.99991 * 11 10 9 40 40 H 1.09002 * 109.47567 * 60.00169 * 11 10 9 41 41 H 1.09003 * 109.46794 * 60.00045 * 14 12 11 42 42 H 1.08995 * 109.47036 * 180.02562 * 14 12 11 43 43 H 1.09001 * 109.46774 * 299.99697 * 14 12 11 44 44 H 0.97000 * 119.99597 * 334.99550 * 15 12 11 45 45 H 1.09001 * 109.46827 * 299.99318 * 18 16 15 46 46 H 1.09002 * 109.47495 * 59.99656 * 18 16 15 47 47 H 0.97003 * 120.00023 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.7886 -0.3649 2.5098 6 6 2.4144 -1.2491 3.2982 7 7 3.0335 -2.1149 2.5474 8 6 2.8078 -1.8070 1.2580 9 6 3.3351 -2.5536 0.0599 10 7 4.6374 -1.9966 -0.3299 11 6 5.1836 -2.7019 -1.4970 12 6 6.5373 -2.0954 -1.8719 13 1 7.2507 -2.2738 -1.0673 14 6 7.0481 -2.7449 -3.1597 15 7 6.3857 -0.6531 -2.0793 16 6 7.4442 0.1657 -1.9194 17 8 8.5224 -0.2916 -1.6044 18 6 7.2880 1.6494 -2.1322 19 16 8.8751 2.4705 -1.8438 20 6 8.4149 4.1430 -2.1534 21 1 7.3980 4.3813 -2.4281 22 6 9.3591 5.1543 -2.0431 23 7 10.5984 4.8640 -1.7077 24 14 8.8711 6.9275 -2.3706 25 1 7.8019 7.3300 -1.4218 26 1 10.0526 7.8081 -2.1866 27 1 8.3707 7.0540 -3.7630 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.4104 -1.2420 4.3782 36 1 3.4515 -3.6079 0.3111 37 1 2.6341 -2.4527 -0.7686 38 1 4.5687 -1.0053 -0.5055 39 1 5.3128 -3.7571 -1.2562 40 1 4.4955 -2.6024 -2.3365 41 1 6.3347 -2.5665 -3.9643 42 1 8.0127 -2.3131 -3.4265 43 1 7.1610 -3.8180 -3.0053 44 1 5.5234 -0.2874 -2.3316 45 1 6.9619 1.8373 -3.1551 46 1 6.5454 2.0401 -1.4364 47 1 11.2582 5.5709 -1.6303 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669245517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:48 Heat of formation + Delta-G solvation = -56.595988 kcal Electronic energy + Delta-G solvation = -27291.614639 eV Core-core repulsion = 23407.692060 eV Total energy + Delta-G solvation = -3883.922579 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.32062 -40.78736 -38.26987 -36.75165 -36.24586 -34.80995 -34.57271 -32.70294 -30.74424 -29.93028 -28.10805 -27.67446 -27.62611 -24.94554 -24.38832 -22.71731 -22.27897 -21.51308 -21.07406 -19.85901 -18.28853 -17.91246 -17.59491 -17.29214 -16.88155 -16.85435 -16.42967 -16.00628 -15.89315 -15.87180 -15.59186 -14.87444 -14.82039 -14.55172 -14.48467 -14.10395 -13.96812 -13.86130 -13.23771 -13.16059 -13.11299 -13.03048 -12.98557 -12.86112 -12.75596 -12.58585 -12.53526 -12.22322 -12.14906 -11.98484 -11.89564 -11.71983 -11.36433 -11.12054 -10.88352 -10.25704 -10.10394 -9.72150 -9.35590 -8.65382 -8.33483 -6.11551 0.50473 1.27918 1.44148 1.47794 1.57318 1.65720 1.68169 1.86805 2.27177 2.32577 3.00524 3.13471 3.33063 3.37473 3.59086 3.80087 3.83623 3.95129 4.05090 4.09260 4.20459 4.26058 4.30905 4.38449 4.46810 4.51175 4.55344 4.67711 4.72438 4.74501 4.79981 4.80563 4.88953 4.94140 4.99718 5.11208 5.14839 5.28548 5.29722 5.32582 5.36259 5.42097 5.56618 5.98048 6.20351 6.31046 6.53977 6.79763 7.07534 7.30963 8.75522 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009557 B = 0.002824 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.998421 B = 9911.703180 C =11721.206378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.008 4.008 3 C -0.151 4.151 4 C -0.032 4.032 5 O -0.211 6.211 6 C 0.167 3.833 7 N -0.510 5.510 8 C -0.031 4.031 9 C 0.147 3.853 10 N -0.701 5.701 11 C 0.066 3.934 12 C 0.145 3.855 13 H 0.060 0.940 14 C -0.156 4.156 15 N -0.706 5.706 16 C 0.536 3.464 17 O -0.565 6.565 18 C -0.128 4.128 19 S -0.154 6.154 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.260 1.260 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.116 0.884 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.284 0.716 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.341 0.659 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.032 0.968 43 H 0.085 0.915 44 H 0.411 0.589 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.521 -14.350 0.866 30.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 C -0.208 4.208 4 C -0.087 4.087 5 O -0.097 6.097 6 C -0.059 4.059 7 N -0.238 5.238 8 C -0.150 4.150 9 C 0.018 3.982 10 N -0.334 5.334 11 C -0.063 4.063 12 C 0.040 3.960 13 H 0.078 0.922 14 C -0.215 4.215 15 N -0.360 5.360 16 C 0.321 3.679 17 O -0.443 6.443 18 C -0.279 4.279 19 S 0.073 5.927 20 C -0.694 4.694 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.549 5.549 24 Si 0.819 3.181 25 H -0.187 1.187 26 H -0.205 1.205 27 H -0.185 1.185 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.134 0.866 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.300 0.700 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.160 0.840 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.052 0.948 43 H 0.103 0.897 44 H 0.248 0.752 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.890 -15.941 2.116 28.798 hybrid contribution -1.932 2.545 -0.867 3.311 sum -25.822 -13.396 1.249 29.117 Atomic orbital electron populations 1.21852 0.92405 1.02672 1.03262 1.19922 0.97351 0.95780 0.89596 1.21894 1.01136 0.94457 1.03305 1.23688 1.02379 0.97920 0.84685 1.84425 1.59535 1.48928 1.16829 1.28897 0.92092 0.84694 1.00239 1.70318 1.22233 1.28334 1.02962 1.21605 1.01962 0.97994 0.93428 1.20139 0.89119 0.98028 0.90910 1.60253 1.26074 1.08201 1.38887 1.22229 0.93309 0.99333 0.91458 1.21034 0.98120 0.78942 0.97917 0.92172 1.22095 1.00933 1.01537 0.96932 1.45750 1.12040 1.07221 1.71001 1.20023 0.84182 0.87924 0.75724 1.90691 1.28275 1.77630 1.47705 1.23362 1.03611 0.94581 1.06360 1.85635 1.11582 1.04082 1.91365 1.23174 0.99477 0.92254 1.54465 0.89836 1.26134 0.94258 1.04731 0.94057 1.70187 1.03596 1.35240 1.45860 0.85016 0.77957 0.75670 0.79433 1.18650 1.20510 1.18486 0.89650 0.92075 0.92936 0.86606 0.93102 0.89494 0.93011 0.70042 0.89652 0.90817 0.83993 0.88275 0.91421 0.90403 0.94842 0.89663 0.75203 0.87164 0.87481 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.18 71.98 0.66 -0.71 16 2 C -0.01 -0.09 3.27 -11.54 -0.04 -0.13 16 3 C -0.15 -2.02 9.18 71.98 0.66 -1.36 16 4 C -0.03 -0.58 5.89 24.79 0.15 -0.43 16 5 O -0.21 -4.05 10.78 -3.77 -0.04 -4.09 16 6 C 0.17 2.93 13.23 130.48 1.73 4.65 16 7 N -0.51 -11.91 11.29 -304.07 -3.43 -15.34 16 8 C -0.03 -0.62 6.62 41.26 0.27 -0.35 16 9 C 0.15 2.30 5.87 85.56 0.50 2.80 16 10 N -0.70 -12.70 6.48 -517.94 -3.36 -16.06 16 11 C 0.07 0.93 5.30 86.30 0.46 1.39 16 12 C 0.14 3.14 2.88 44.99 0.13 3.27 16 13 H 0.06 1.80 7.58 -2.39 -0.02 1.78 16 14 C -0.16 -3.02 9.48 71.98 0.68 -2.34 16 15 N -0.71 -16.93 4.36 -442.53 -1.93 -18.86 16 16 C 0.54 19.68 7.81 87.66 0.68 20.36 16 17 O -0.57 -26.64 15.52 -3.01 -0.05 -26.69 16 18 C -0.13 -5.01 6.16 71.24 0.44 -4.58 16 19 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 20 C -0.55 -31.17 9.50 67.95 0.65 -30.52 16 21 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 22 C 0.01 0.73 5.49 84.86 0.47 1.20 16 23 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 24 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 28 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.12 0.93 6.82 -2.39 -0.02 0.92 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.28 2.08 8.06 -2.91 -0.02 2.05 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 0.72 7.16 -2.39 -0.02 0.70 16 38 H 0.34 6.23 7.57 -89.69 -0.68 5.55 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.41 6.72 8.15 -92.71 -0.76 5.97 16 45 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 46 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 47 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -84.65 408.40 -0.67 -85.32 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -0.46 Total: 22.93 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 7.44 Total: -6.75 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -8.43 Total: -106.47 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.09 Total: -30.78 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -84.65 -0.67 -85.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669245517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.727 kcal (2) G-P(sol) polarization free energy of solvation -84.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds