Wall clock time and date at job start Wed Apr 1 2020 00:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47555 * 2 1 4 4 C 1.46759 * 124.35048 * 89.99238 * 3 2 1 5 5 C 1.54481 * 105.47418 * 163.00795 * 4 3 2 6 6 C 1.54625 * 101.79726 * 25.40118 * 5 4 3 7 7 H 1.08999 * 110.48809 * 93.89823 * 6 5 4 8 8 N 1.46895 * 110.48580 * 216.54067 * 6 5 4 9 9 C 1.46904 * 110.99877 * 209.87701 * 8 6 5 10 10 C 1.52998 * 115.55154 * 270.07599 * 9 8 6 11 11 N 1.46496 * 109.47498 * 322.04658 * 10 9 8 12 12 C 1.34774 * 120.00129 * 173.96057 * 11 10 9 13 13 O 1.21274 * 120.00243 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00027 * 179.97438 * 12 11 10 15 15 S 1.80991 * 109.47466 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00515 * 180.02562 * 15 14 12 17 17 H 1.07997 * 119.99637 * 359.97438 * 16 15 14 18 18 C 1.38802 * 120.00073 * 180.02562 * 16 15 14 19 19 N 1.31629 * 120.00050 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99466 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46976 * 90.00211 * 20 18 16 22 22 H 1.48508 * 109.46961 * 209.99548 * 20 18 16 23 23 H 1.48500 * 109.47640 * 329.99811 * 20 18 16 24 24 C 1.52997 * 117.49543 * 124.37466 * 9 8 6 25 25 C 1.52993 * 117.49816 * 55.75340 * 9 8 6 26 26 C 1.34419 * 124.34820 * 270.02659 * 3 2 1 27 27 O 1.21275 * 124.94503 * 0.38660 * 26 3 2 28 28 H 1.08995 * 109.47478 * 300.00526 * 1 2 3 29 29 H 1.09009 * 109.46906 * 60.00101 * 1 2 3 30 30 H 1.09001 * 109.47098 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47529 * 239.99759 * 2 1 3 32 32 H 1.09003 * 109.47237 * 120.00130 * 2 1 3 33 33 H 1.09004 * 110.24705 * 44.00743 * 4 3 2 34 34 H 1.09002 * 110.32452 * 282.04977 * 4 3 2 35 35 H 1.09008 * 110.96537 * 143.53614 * 5 4 3 36 36 H 1.08999 * 110.96998 * 267.26289 * 5 4 3 37 37 H 1.00896 * 111.00003 * 85.92612 * 8 6 5 38 38 H 1.09009 * 109.46837 * 82.04487 * 10 9 8 39 39 H 1.08993 * 109.47277 * 202.03953 * 10 9 8 40 40 H 0.97003 * 119.99906 * 353.95577 * 11 10 9 41 41 H 1.09002 * 109.47210 * 300.00353 * 14 12 11 42 42 H 1.09000 * 109.47162 * 59.99652 * 14 12 11 43 43 H 0.96992 * 119.99826 * 180.02562 * 19 18 16 44 44 H 1.09009 * 117.50205 * 359.97438 * 24 9 8 45 45 H 1.09005 * 117.50076 * 145.02327 * 24 9 8 46 46 H 1.09004 * 117.50329 * 214.97749 * 25 9 8 47 47 H 1.09003 * 117.50063 * 359.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2943 2.1620 1.2116 5 6 3.1740 3.3444 0.7486 6 6 2.7697 3.4760 -0.7380 7 1 1.9749 4.2129 -0.8534 8 7 3.9334 3.8408 -1.5569 9 6 3.5270 4.6310 -2.7267 10 6 3.1917 3.8252 -3.9833 11 7 4.1153 2.6940 -4.0991 12 6 3.9343 1.7724 -5.0657 13 8 3.0066 1.8794 -5.8395 14 6 4.8848 0.6091 -5.1851 15 16 4.3799 -0.4431 -6.5686 16 6 5.6260 -1.6856 -6.4789 17 1 6.3897 -1.6303 -5.7173 18 6 5.6266 -2.7347 -7.3877 19 7 4.6961 -2.8017 -8.3162 20 14 6.9482 -4.0515 -7.2929 21 1 6.4902 -5.1493 -6.4038 22 1 7.2079 -4.5909 -8.6519 23 1 8.1970 -3.4613 -6.7476 24 6 4.1858 5.9985 -2.9188 25 6 2.7252 5.9089 -2.4720 26 6 2.2708 2.0964 -1.1098 27 8 2.1210 1.6945 -2.2442 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.8326 1.5532 1.9382 34 1 1.3643 2.5306 1.6445 35 1 2.9300 4.2519 1.3011 36 1 4.2328 3.1041 0.8451 37 1 4.4502 3.0205 -1.8365 38 1 2.1691 3.4538 -3.9146 39 1 3.2879 4.4641 -4.8611 40 1 4.8571 2.6082 -3.4800 41 1 5.8941 0.9810 -5.3615 42 1 4.8674 0.0295 -4.2621 43 1 4.6964 -3.5350 -8.9510 44 1 4.9204 6.3120 -2.1770 45 1 4.3804 6.3244 -3.9407 46 1 1.9589 6.1758 -3.1999 47 1 2.4989 6.1631 -1.4365 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670746005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:56 Heat of formation + Delta-G solvation = -31.938960 kcal Electronic energy + Delta-G solvation = -28210.334028 eV Core-core repulsion = 24327.480658 eV Total energy + Delta-G solvation = -3882.853370 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.95337 -39.28999 -38.05469 -36.59243 -34.63556 -33.78088 -32.36579 -31.90141 -29.61444 -29.12828 -26.84243 -26.00832 -25.31380 -23.77807 -22.92413 -21.67261 -20.26447 -20.03761 -19.48706 -17.97691 -17.34206 -16.74741 -16.41043 -16.18080 -15.84426 -15.27428 -14.88252 -14.74815 -14.51174 -14.37993 -14.17253 -13.78482 -13.74247 -13.72846 -13.29929 -13.12917 -12.96142 -12.69177 -12.49381 -12.41644 -12.12915 -12.10860 -11.76432 -11.61116 -11.45901 -11.27628 -11.01979 -10.96061 -10.92113 -10.71423 -10.41658 -9.97253 -9.74155 -9.20710 -9.00808 -8.97250 -8.78262 -8.64111 -8.13483 -6.40730 -6.15228 -3.84387 2.37595 2.73143 3.07395 3.25694 3.28603 3.33319 3.33518 3.49314 3.60253 3.91348 4.06389 4.17585 4.26778 4.50029 4.52879 4.64568 4.71249 4.78546 4.86515 4.95148 5.03808 5.10497 5.17866 5.19473 5.27436 5.32911 5.38929 5.45595 5.46732 5.58913 5.67374 5.67530 5.69611 5.81617 5.92113 5.93800 5.98826 6.04882 6.24803 6.33735 6.49397 6.70518 6.89072 6.94260 7.65463 7.86785 8.02604 8.41527 8.83064 9.29726 10.92263 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011230 B = 0.003099 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.775461 B = 9032.431200 C =10537.110479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.120 3.880 3 N -0.620 5.620 4 C 0.101 3.899 5 C -0.119 4.119 6 C 0.055 3.945 7 H 0.114 0.886 8 N -0.623 5.623 9 C 0.019 3.981 10 C 0.145 3.855 11 N -0.727 5.727 12 C 0.540 3.460 13 O -0.518 6.518 14 C -0.150 4.150 15 S -0.059 6.059 16 C -0.534 4.534 17 H 0.071 0.929 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.149 4.149 25 C -0.164 4.164 26 C 0.478 3.522 27 O -0.496 6.496 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.350 0.650 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.389 0.611 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.268 0.732 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.956 16.287 24.430 29.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.001 4.001 3 N -0.356 5.356 4 C -0.023 4.023 5 C -0.158 4.158 6 C -0.059 4.059 7 H 0.132 0.868 8 N -0.255 5.255 9 C -0.073 4.073 10 C 0.019 3.981 11 N -0.382 5.382 12 C 0.326 3.674 13 O -0.392 6.392 14 C -0.301 4.301 15 S 0.168 5.832 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.744 3.256 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.187 4.187 25 C -0.202 4.202 26 C 0.263 3.737 27 O -0.369 6.369 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.171 0.829 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.223 0.777 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.077 0.923 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.521 16.608 22.723 28.682 hybrid contribution 1.775 -1.823 0.937 2.711 sum -3.746 14.785 23.659 28.150 Atomic orbital electron populations 1.22139 0.95779 1.02504 1.02207 1.21371 0.94406 0.80995 1.03357 1.48320 1.66274 1.13801 1.07217 1.22102 0.99412 0.92980 0.87765 1.22652 1.01116 0.98241 0.93786 1.22468 0.94381 0.94511 0.94527 0.86826 1.60688 1.19826 1.25785 1.19165 1.21768 1.05900 0.88557 0.91110 1.21108 0.94959 0.87345 0.94738 1.45724 1.31516 1.26171 1.34810 1.20089 0.85345 0.82276 0.79648 1.90678 1.31484 1.75295 1.41763 1.23493 1.01113 0.98706 1.06774 1.85388 1.39927 1.24126 1.33759 1.22884 1.14762 1.11124 1.19488 0.91049 1.24982 0.96495 0.97569 0.94549 1.70025 1.32537 1.31469 1.16316 0.86184 0.80985 0.80839 0.77577 1.20330 1.20768 1.19712 1.23220 0.95451 0.97217 1.02787 1.23116 0.95437 0.98796 1.02821 1.21848 0.78139 0.88703 0.85045 1.90898 1.50992 1.74722 1.20271 0.92722 0.92160 0.91313 0.89651 0.90513 0.90348 0.91256 0.89039 0.89177 0.82879 0.90315 0.91731 0.77650 0.89538 0.89598 0.92263 0.87937 0.88311 0.88198 0.88122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.24 37.15 0.38 -1.10 16 2 C 0.12 1.13 6.65 -4.04 -0.03 1.10 16 3 N -0.62 -5.82 2.93 -172.39 -0.51 -6.32 16 4 C 0.10 0.56 7.35 -3.12 -0.02 0.54 16 5 C -0.12 -0.64 6.88 -25.10 -0.17 -0.81 16 6 C 0.05 0.46 3.17 -67.70 -0.21 0.25 16 7 H 0.11 0.92 6.43 -51.93 -0.33 0.58 16 8 N -0.62 -5.67 6.52 -93.03 -0.61 -6.28 16 9 C 0.02 0.19 2.21 -131.61 -0.29 -0.11 16 10 C 0.14 2.01 5.03 -4.05 -0.02 1.99 16 11 N -0.73 -11.34 4.58 -60.30 -0.28 -11.62 16 12 C 0.54 11.36 7.85 -10.99 -0.09 11.27 16 13 O -0.52 -13.06 15.85 5.56 0.09 -12.98 16 14 C -0.15 -3.33 6.16 36.01 0.22 -3.11 16 15 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 16 C -0.53 -15.83 9.50 30.94 0.29 -15.54 16 17 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 18 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 19 N -0.87 -26.95 13.22 55.49 0.73 -26.22 16 20 Si 0.92 21.99 29.55 -169.99 -5.02 16.97 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 C -0.15 -1.21 10.10 -26.73 -0.27 -1.48 16 25 C -0.16 -1.27 9.08 -26.74 -0.24 -1.51 16 26 C 0.48 5.72 7.32 -10.83 -0.08 5.64 16 27 O -0.50 -8.38 15.07 5.56 0.08 -8.30 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 1.03 7.93 -51.93 -0.41 0.62 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 36 H 0.09 0.50 8.09 -51.93 -0.42 0.08 16 37 H 0.35 3.62 6.06 -39.29 -0.24 3.38 16 38 H 0.08 1.32 7.20 -51.92 -0.37 0.95 16 39 H 0.06 0.91 7.93 -51.93 -0.41 0.50 16 40 H 0.39 5.08 6.69 -40.82 -0.27 4.81 16 41 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 42 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 43 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 45 H 0.10 0.80 8.07 -51.93 -0.42 0.38 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.10 0.66 7.56 -51.93 -0.39 0.26 16 LS Contribution 398.30 15.07 6.00 6.00 Total: -1.00 -37.82 398.30 -9.81 -47.63 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.47 Total: 5.82 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.63 Total: -0.80 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.65 Total: -50.44 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.17 Total: -21.27 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.82 -9.81 -47.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670746005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.689 kcal (2) G-P(sol) polarization free energy of solvation -37.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds