Wall clock time and date at job start Wed Apr 1 2020 00:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47555 * 2 1 4 4 C 1.46759 * 124.35048 * 89.99238 * 3 2 1 5 5 C 1.54481 * 105.47418 * 163.00795 * 4 3 2 6 6 C 1.54625 * 101.79726 * 25.40118 * 5 4 3 7 7 H 1.08999 * 110.48809 * 93.89823 * 6 5 4 8 8 N 1.46895 * 110.48580 * 216.54067 * 6 5 4 9 9 C 1.46904 * 110.99877 * 209.87701 * 8 6 5 10 10 C 1.52998 * 115.55154 * 270.07599 * 9 8 6 11 11 N 1.46496 * 109.47498 * 322.04658 * 10 9 8 12 12 C 1.34774 * 120.00129 * 173.96057 * 11 10 9 13 13 O 1.21274 * 120.00243 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00027 * 179.97438 * 12 11 10 15 15 S 1.80991 * 109.47466 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00515 * 180.02562 * 15 14 12 17 17 H 1.07997 * 119.99637 * 359.97438 * 16 15 14 18 18 C 1.38802 * 120.00073 * 180.02562 * 16 15 14 19 19 N 1.31629 * 120.00050 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99466 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46976 * 90.00211 * 20 18 16 22 22 H 1.48508 * 109.46961 * 209.99548 * 20 18 16 23 23 H 1.48500 * 109.47640 * 329.99811 * 20 18 16 24 24 C 1.52997 * 117.49543 * 124.37466 * 9 8 6 25 25 C 1.52993 * 117.49816 * 55.75340 * 9 8 6 26 26 C 1.34419 * 124.34820 * 270.02659 * 3 2 1 27 27 O 1.21275 * 124.94503 * 0.38660 * 26 3 2 28 28 H 1.08995 * 109.47478 * 300.00526 * 1 2 3 29 29 H 1.09009 * 109.46906 * 60.00101 * 1 2 3 30 30 H 1.09001 * 109.47098 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47529 * 239.99759 * 2 1 3 32 32 H 1.09003 * 109.47237 * 120.00130 * 2 1 3 33 33 H 1.09004 * 110.24705 * 44.00743 * 4 3 2 34 34 H 1.09002 * 110.32452 * 282.04977 * 4 3 2 35 35 H 1.09008 * 110.96537 * 143.53614 * 5 4 3 36 36 H 1.08999 * 110.96998 * 267.26289 * 5 4 3 37 37 H 1.00896 * 111.00003 * 85.92612 * 8 6 5 38 38 H 1.09009 * 109.46837 * 82.04487 * 10 9 8 39 39 H 1.08993 * 109.47277 * 202.03953 * 10 9 8 40 40 H 0.97003 * 119.99906 * 353.95577 * 11 10 9 41 41 H 1.09002 * 109.47210 * 300.00353 * 14 12 11 42 42 H 1.09000 * 109.47162 * 59.99652 * 14 12 11 43 43 H 0.96992 * 119.99826 * 180.02562 * 19 18 16 44 44 H 1.09009 * 117.50205 * 359.97438 * 24 9 8 45 45 H 1.09005 * 117.50076 * 145.02327 * 24 9 8 46 46 H 1.09004 * 117.50329 * 214.97749 * 25 9 8 47 47 H 1.09003 * 117.50063 * 359.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2943 2.1620 1.2116 5 6 3.1740 3.3444 0.7486 6 6 2.7697 3.4760 -0.7380 7 1 1.9749 4.2129 -0.8534 8 7 3.9334 3.8408 -1.5569 9 6 3.5270 4.6310 -2.7267 10 6 3.1917 3.8252 -3.9833 11 7 4.1153 2.6940 -4.0991 12 6 3.9343 1.7724 -5.0657 13 8 3.0066 1.8794 -5.8395 14 6 4.8848 0.6091 -5.1851 15 16 4.3799 -0.4431 -6.5686 16 6 5.6260 -1.6856 -6.4789 17 1 6.3897 -1.6303 -5.7173 18 6 5.6266 -2.7347 -7.3877 19 7 4.6961 -2.8017 -8.3162 20 14 6.9482 -4.0515 -7.2929 21 1 6.4902 -5.1493 -6.4038 22 1 7.2079 -4.5909 -8.6519 23 1 8.1970 -3.4613 -6.7476 24 6 4.1858 5.9985 -2.9188 25 6 2.7252 5.9089 -2.4720 26 6 2.2708 2.0964 -1.1098 27 8 2.1210 1.6945 -2.2442 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.8326 1.5532 1.9382 34 1 1.3643 2.5306 1.6445 35 1 2.9300 4.2519 1.3011 36 1 4.2328 3.1041 0.8451 37 1 4.4502 3.0205 -1.8365 38 1 2.1691 3.4538 -3.9146 39 1 3.2879 4.4641 -4.8611 40 1 4.8571 2.6082 -3.4800 41 1 5.8941 0.9810 -5.3615 42 1 4.8674 0.0295 -4.2621 43 1 4.6964 -3.5350 -8.9510 44 1 4.9204 6.3120 -2.1770 45 1 4.3804 6.3244 -3.9407 46 1 1.9589 6.1758 -3.1999 47 1 2.4989 6.1631 -1.4365 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670746005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:56 Heat of formation + Delta-G solvation = -60.690077 kcal Electronic energy + Delta-G solvation = -28211.580770 eV Core-core repulsion = 24327.480658 eV Total energy + Delta-G solvation = -3884.100112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74975 -40.66455 -39.15225 -37.48930 -35.39364 -35.17054 -34.61457 -32.60659 -31.30220 -29.80621 -27.92573 -27.53224 -26.97435 -24.48331 -23.55253 -22.29041 -21.83303 -20.90069 -20.29212 -19.89576 -18.44036 -17.78845 -17.62252 -17.16540 -16.91175 -16.83171 -16.62048 -16.23908 -15.66552 -15.43666 -15.17616 -14.94718 -14.70704 -14.65011 -14.45751 -14.44083 -14.18499 -13.89562 -13.51058 -13.39860 -13.20256 -13.13708 -12.90895 -12.81160 -12.71753 -12.63681 -12.28236 -12.13225 -11.94011 -11.78204 -11.62410 -11.28707 -11.17004 -10.93906 -10.81042 -10.32368 -10.08018 -9.73784 -9.56037 -8.70965 -8.37035 -6.16374 1.22741 1.40573 1.43105 1.50995 1.55164 1.62906 2.03821 2.17362 2.25004 2.79073 2.87181 2.96598 3.29558 3.39954 3.60709 3.66660 3.86921 3.95256 4.02135 4.05429 4.16674 4.17641 4.21538 4.26628 4.38958 4.40153 4.43003 4.64600 4.67614 4.68581 4.77450 4.79174 4.81355 4.90401 5.07150 5.11001 5.15568 5.21154 5.32483 5.37337 5.38073 5.63876 5.78592 5.99974 6.16125 6.16848 6.42946 7.03134 7.18168 7.22449 8.72647 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011230 B = 0.003099 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.775461 B = 9032.431200 C =10537.110479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.116 3.884 3 N -0.618 5.618 4 C 0.096 3.904 5 C -0.106 4.106 6 C 0.056 3.944 7 H 0.121 0.879 8 N -0.608 5.608 9 C 0.002 3.998 10 C 0.148 3.852 11 N -0.699 5.699 12 C 0.539 3.461 13 O -0.569 6.569 14 C -0.124 4.124 15 S -0.149 6.149 16 C -0.549 4.549 17 H 0.081 0.919 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 1.002 2.998 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.257 1.257 24 C -0.134 4.134 25 C -0.149 4.149 26 C 0.462 3.538 27 O -0.561 6.561 28 H 0.076 0.924 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.340 0.660 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.405 0.595 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.272 0.728 44 H 0.118 0.882 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.019 17.529 28.312 33.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.006 4.006 3 N -0.353 5.353 4 C -0.025 4.025 5 C -0.144 4.144 6 C -0.057 4.057 7 H 0.138 0.862 8 N -0.239 5.239 9 C -0.091 4.091 10 C 0.022 3.978 11 N -0.353 5.353 12 C 0.325 3.675 13 O -0.447 6.447 14 C -0.276 4.276 15 S 0.078 5.922 16 C -0.696 4.696 17 H 0.100 0.900 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.823 3.177 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.181 1.181 24 C -0.172 4.172 25 C -0.187 4.187 26 C 0.249 3.751 27 O -0.439 6.439 28 H 0.095 0.905 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.127 0.873 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.140 0.860 36 H 0.110 0.890 37 H 0.161 0.839 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.242 0.758 41 H 0.128 0.872 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.563 17.900 26.714 32.353 hybrid contribution 1.094 -2.134 -0.166 2.404 sum -2.468 15.766 26.548 30.975 Atomic orbital electron populations 1.22070 0.95349 1.02878 1.01564 1.21398 0.94777 0.81412 1.02981 1.48521 1.64857 1.13744 1.08167 1.22432 1.00802 0.92925 0.86382 1.22691 1.01156 0.99397 0.91141 1.22636 0.94395 0.92234 0.96415 0.86170 1.60873 1.19630 1.25017 1.18334 1.21652 1.08817 0.88926 0.89668 1.21135 0.92803 0.86620 0.97193 1.45434 1.31700 1.25178 1.32988 1.19938 0.84493 0.82773 0.80265 1.90655 1.33417 1.76535 1.44118 1.23306 1.02275 0.98055 1.03935 1.85589 1.41934 1.26693 1.38023 1.23201 1.14770 1.11457 1.20194 0.90046 1.26183 0.99145 1.00160 0.93679 1.70194 1.34781 1.32577 1.17268 0.84909 0.77649 0.77092 0.78022 1.19234 1.19998 1.18064 1.23279 0.96005 0.94591 1.03305 1.23242 0.95352 0.96003 1.04099 1.22615 0.77555 0.90319 0.84658 1.90867 1.53902 1.76289 1.22832 0.90455 0.95469 0.90549 0.93489 0.87321 0.88254 0.89259 0.86021 0.88959 0.83936 0.93693 0.92121 0.75834 0.87192 0.88481 0.91913 0.86403 0.88396 0.88310 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 10.24 71.98 0.74 -2.09 16 2 C 0.12 2.18 6.65 86.38 0.57 2.75 16 3 N -0.62 -10.99 2.93 -817.90 -2.40 -13.39 16 4 C 0.10 0.74 7.35 86.83 0.64 1.38 16 5 C -0.11 -0.72 6.88 31.65 0.22 -0.51 16 6 C 0.06 0.85 3.17 44.93 0.14 0.99 16 7 H 0.12 1.66 6.43 -2.39 -0.02 1.64 16 8 N -0.61 -9.97 6.52 -448.25 -2.92 -12.89 16 9 C 0.00 0.03 2.21 3.52 0.01 0.04 16 10 C 0.15 4.26 5.03 86.38 0.43 4.69 16 11 N -0.70 -22.38 4.58 -463.08 -2.12 -24.51 16 12 C 0.54 23.69 7.85 87.66 0.69 24.38 16 13 O -0.57 -30.57 15.85 -3.01 -0.05 -30.62 16 14 C -0.12 -5.66 6.16 71.24 0.44 -5.22 16 15 S -0.15 -8.99 20.57 -56.49 -1.16 -10.16 16 16 C -0.55 -33.09 9.50 67.95 0.65 -32.44 16 17 H 0.08 4.57 7.80 -2.91 -0.02 4.55 16 18 C 0.01 0.77 5.49 84.86 0.47 1.23 16 19 N -0.91 -58.16 13.22 21.65 0.29 -57.88 16 20 Si 1.00 45.11 29.55 68.60 2.03 47.13 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 C -0.13 -1.83 10.10 30.59 0.31 -1.52 16 25 C -0.15 -1.96 9.08 30.59 0.28 -1.68 16 26 C 0.46 11.16 7.32 87.92 0.64 11.81 16 27 O -0.56 -20.30 15.07 -3.01 -0.05 -20.34 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 29 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.23 7.93 -2.39 -0.02 1.22 16 32 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.12 0.19 8.14 -2.38 -0.02 0.17 16 36 H 0.09 0.66 8.09 -2.39 -0.02 0.64 16 37 H 0.34 6.67 6.06 -89.70 -0.54 6.13 16 38 H 0.04 1.63 7.20 -2.38 -0.02 1.61 16 39 H 0.06 1.78 7.93 -2.39 -0.02 1.76 16 40 H 0.40 10.45 6.69 -92.71 -0.62 9.83 16 41 H 0.11 4.45 8.14 -2.39 -0.02 4.43 16 42 H 0.10 4.18 8.14 -2.39 -0.02 4.16 16 43 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 44 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 45 H 0.10 1.38 8.07 -2.38 -0.02 1.36 16 46 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 47 H 0.12 1.12 7.56 -2.39 -0.02 1.10 16 Total: -1.00 -89.38 398.30 -0.34 -89.72 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.18 Total: 29.12 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 6.22 Total: 3.81 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -7.16 Total: -108.66 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -0.09 Total: -50.96 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.16 Total: -10.16 kcal Total: -89.38 -0.34 -89.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670746005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.027 kcal (2) G-P(sol) polarization free energy of solvation -89.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds