Wall clock time and date at job start Wed Apr 1 2020 00:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47486 * 2 1 4 4 C 1.50697 * 109.46961 * 239.99568 * 2 1 3 5 5 N 1.34777 * 120.00075 * 60.00894 * 4 2 1 6 6 O 1.21283 * 120.00261 * 240.00354 * 4 2 1 7 7 N 1.46906 * 109.46897 * 119.99976 * 2 1 3 8 8 C 1.47993 * 110.99656 * 300.77434 * 7 2 1 9 9 C 1.55214 * 104.99099 * 213.96591 * 8 7 2 10 10 C 1.53495 * 101.46414 * 35.39234 * 9 8 7 11 11 C 1.53474 * 111.80547 * 204.14010 * 10 9 8 12 12 C 1.54626 * 102.75005 * 272.88094 * 11 10 9 13 13 N 1.47158 * 107.34013 * 339.33093 * 12 11 10 14 14 C 1.34770 * 125.59998 * 179.10381 * 13 12 11 15 15 O 1.21277 * 120.00149 * 179.97438 * 14 13 12 16 16 C 1.50701 * 120.00143 * 359.97417 * 14 13 12 17 17 S 1.81003 * 109.47183 * 179.97438 * 16 14 13 18 18 C 1.76207 * 99.99864 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99851 * 0.02562 * 18 17 16 20 20 C 1.38789 * 119.99886 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00279 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00090 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46615 * 89.99982 * 22 20 18 24 24 H 1.48493 * 109.47144 * 209.99896 * 22 20 18 25 25 H 1.48496 * 109.46678 * 330.00062 * 22 20 18 26 26 C 1.47752 * 108.79842 * 359.08464 * 13 12 11 27 27 C 1.47858 * 111.00046 * 180.02562 * 7 2 1 28 28 H 1.09000 * 109.47486 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47362 * 300.00723 * 1 2 3 30 30 H 1.09002 * 109.46716 * 60.00082 * 1 2 3 31 31 H 0.96996 * 119.99636 * 359.97438 * 5 4 2 32 32 H 0.97001 * 119.99894 * 180.02562 * 5 4 2 33 33 H 1.08997 * 110.33839 * 332.84247 * 8 7 2 34 34 H 1.08997 * 110.34181 * 95.08738 * 8 7 2 35 35 H 1.08991 * 111.02627 * 277.35033 * 9 8 7 36 36 H 1.08995 * 111.06242 * 153.45419 * 9 8 7 37 37 H 1.09007 * 110.75381 * 31.19528 * 11 10 9 38 38 H 1.09003 * 110.75720 * 154.56433 * 11 10 9 39 39 H 1.09005 * 109.86723 * 98.76599 * 12 11 10 40 40 H 1.08998 * 109.87033 * 219.74906 * 12 11 10 41 41 H 1.08996 * 109.47151 * 300.00541 * 16 14 13 42 42 H 1.09005 * 109.47200 * 59.99925 * 16 14 13 43 43 H 0.97004 * 120.00338 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.39328 * 263.55520 * 26 13 12 45 45 H 1.08995 * 110.39851 * 141.15471 * 26 13 12 46 46 H 1.09005 * 110.00092 * 243.70864 * 27 7 2 47 47 H 1.09003 * 110.00452 * 5.05249 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 1.7068 -0.2500 -2.4545 6 8 2.7295 -1.6966 -1.1191 7 7 2.0196 -0.6925 1.1995 8 6 1.5298 -0.0322 2.4301 9 6 2.6774 -0.2028 3.4612 10 6 3.9156 -0.0860 2.5616 11 6 5.1355 -0.7848 3.1773 12 6 5.7484 0.3205 4.0682 13 7 5.2482 1.6121 3.5711 14 6 5.5393 2.8198 4.0936 15 8 5.0692 3.8231 3.6005 16 6 6.4491 2.9235 5.2905 17 16 6.6448 4.6631 5.7506 18 6 7.7233 4.4942 7.1338 19 1 8.0524 3.5139 7.4455 20 6 8.1499 5.6210 7.8228 21 7 7.7492 6.8158 7.4427 22 14 9.2927 5.4420 9.2896 23 1 10.7030 5.4953 8.8276 24 1 9.0438 6.5478 10.2489 25 1 9.0396 4.1404 9.9582 26 6 4.3747 1.3674 2.4048 27 6 3.4977 -0.7117 1.2340 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.1490 0.5385 -2.5435 32 1 2.0298 -0.7076 -3.2465 33 1 1.3422 1.0252 2.2436 34 1 0.6237 -0.5213 2.7875 35 1 2.6319 -1.1815 3.9386 36 1 2.6576 0.5940 4.2047 37 1 4.8278 -1.6399 3.7793 38 1 5.8382 -1.0898 2.4018 39 1 5.4381 0.1765 5.1032 40 1 6.8358 0.2908 3.9999 41 1 6.0154 2.3730 6.1253 42 1 7.4234 2.5014 5.0440 43 1 8.0471 7.6033 7.9244 44 1 4.9350 1.4909 1.4780 45 1 3.5177 2.0406 2.4241 46 1 3.8586 -1.7387 1.1762 47 1 3.8977 -0.1284 0.4047 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671066122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:43 Heat of formation + Delta-G solvation = -61.950462 kcal Electronic energy + Delta-G solvation = -27849.348662 eV Core-core repulsion = 23965.193895 eV Total energy + Delta-G solvation = -3884.154767 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10346 -39.83808 -38.46398 -36.52848 -34.35168 -33.23321 -32.43229 -30.93681 -29.70409 -29.64514 -28.47825 -25.60583 -25.06012 -24.84975 -22.89908 -21.80969 -20.31250 -19.55620 -19.35121 -17.89518 -17.69947 -17.11844 -16.53780 -16.22947 -15.88687 -15.69439 -15.04991 -14.89935 -14.80271 -14.40313 -14.26582 -13.90898 -13.75581 -13.51892 -13.26052 -12.92010 -12.66525 -12.65129 -12.58821 -12.50428 -12.18658 -12.15415 -11.89803 -11.73736 -11.52672 -11.07434 -11.06392 -11.02574 -10.80802 -10.75356 -10.69049 -10.13140 -10.05085 -9.81884 -9.42320 -9.06913 -8.64433 -8.49524 -8.23938 -6.50748 -6.21939 -3.92668 2.28923 2.90762 2.97323 3.06077 3.22159 3.25928 3.30252 3.60298 3.62317 4.09260 4.18374 4.20413 4.34186 4.45356 4.57953 4.68295 4.71514 4.96306 4.97392 5.01784 5.07194 5.10904 5.13236 5.24636 5.32139 5.38870 5.46994 5.52154 5.60498 5.63113 5.67025 5.69712 5.74327 5.77167 5.81791 5.90292 5.98669 6.03045 6.14537 6.35384 6.40730 6.58252 6.59733 6.95457 7.59251 7.67836 7.90697 8.35024 8.55273 9.23330 10.85494 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026402 B = 0.002131 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.273298 B =13134.529227 C =13431.169196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 H 0.070 0.930 4 C 0.521 3.479 5 N -0.857 5.857 6 O -0.524 6.524 7 N -0.507 5.507 8 C 0.042 3.958 9 C -0.112 4.112 10 C -0.099 4.099 11 C -0.113 4.113 12 C 0.102 3.898 13 N -0.624 5.624 14 C 0.548 3.452 15 O -0.518 6.518 16 C -0.146 4.146 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.124 3.876 27 C 0.074 3.926 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.400 0.600 32 H 0.402 0.598 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.418 -17.863 -16.241 28.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.058 4.058 3 H 0.087 0.913 4 C 0.305 3.695 5 N -0.422 5.422 6 O -0.398 6.398 7 N -0.232 5.232 8 C -0.085 4.085 9 C -0.150 4.150 10 C -0.100 4.100 11 C -0.152 4.152 12 C -0.021 4.021 13 N -0.362 5.362 14 C 0.337 3.663 15 O -0.392 6.392 16 C -0.296 4.296 17 S 0.165 5.835 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C 0.001 3.999 27 C -0.053 4.053 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.229 0.771 32 H 0.233 0.767 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.110 0.890 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.835 -17.219 -16.651 28.175 hybrid contribution 1.495 -0.166 1.064 1.842 sum -13.340 -17.385 -15.587 26.891 Atomic orbital electron populations 1.21818 0.91828 1.03555 1.02836 1.21817 0.97502 0.96331 0.90110 0.91258 1.20472 0.79674 0.84438 0.84898 1.43864 1.56371 1.33955 1.08046 1.90759 1.36871 1.25594 1.86566 1.63674 1.08903 1.50428 1.00213 1.23186 0.98730 0.97409 0.89188 1.22525 0.92356 1.03128 0.97029 1.21897 0.96122 0.95219 0.96809 1.22445 0.96205 0.97314 0.99186 1.22067 0.99069 0.82651 0.98319 1.48600 1.49780 1.05956 1.31864 1.20032 0.80962 0.81138 0.84179 1.90700 1.52343 1.34653 1.61545 1.23501 1.00560 1.08167 0.97404 1.85385 1.63180 0.96452 1.38517 1.22854 1.33511 0.95810 1.16051 0.90933 1.24994 0.96386 0.94463 0.97765 1.70020 1.42750 0.97792 1.39751 0.86164 0.80312 0.78001 0.81007 1.20260 1.20744 1.19680 1.21958 0.94217 0.94556 0.89204 1.22500 0.86663 1.01807 0.94362 0.91056 0.91028 0.91717 0.77124 0.76704 0.93121 0.89728 0.89990 0.90118 0.89515 0.90218 0.91227 0.91238 0.89315 0.89330 0.92190 0.91869 0.90713 0.88973 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 8.97 37.16 0.33 -0.42 16 2 C 0.05 0.41 2.07 -68.86 -0.14 0.27 16 3 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 4 C 0.52 4.48 6.83 -10.99 -0.08 4.41 16 5 N -0.86 -4.03 8.77 31.22 0.27 -3.76 16 6 O -0.52 -6.65 15.64 5.55 0.09 -6.56 16 7 N -0.51 -4.60 4.84 -225.09 -1.09 -5.69 16 8 C 0.04 0.34 5.34 -2.05 -0.01 0.33 16 9 C -0.11 -1.00 5.96 -25.30 -0.15 -1.15 16 10 C -0.10 -0.94 0.61 -154.09 -0.09 -1.04 16 11 C -0.11 -0.99 5.85 -25.63 -0.15 -1.14 16 12 C 0.10 1.14 6.46 -2.83 -0.02 1.12 16 13 N -0.62 -9.19 3.34 -171.00 -0.57 -9.76 16 14 C 0.55 10.76 7.87 -10.99 -0.09 10.67 16 15 O -0.52 -12.14 16.14 5.56 0.09 -12.05 16 16 C -0.15 -3.04 5.35 36.01 0.19 -2.84 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16 18 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16 19 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 22 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.12 1.54 5.76 -3.24 -0.02 1.52 16 27 C 0.07 0.73 4.48 -3.50 -0.02 0.71 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.36 7.03 -51.93 -0.37 0.00 16 30 H 0.06 0.20 7.56 -51.93 -0.39 -0.19 16 31 H 0.40 0.78 8.25 -40.82 -0.34 0.44 16 32 H 0.40 1.59 8.93 -40.82 -0.36 1.23 16 33 H 0.05 0.41 7.56 -51.93 -0.39 0.02 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.66 7.85 -51.93 -0.41 0.26 16 36 H 0.08 0.82 8.00 -51.93 -0.42 0.41 16 37 H 0.09 0.63 7.80 -51.93 -0.40 0.23 16 38 H 0.08 0.65 8.07 -51.93 -0.42 0.24 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.06 0.79 7.78 -51.93 -0.40 0.39 16 45 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 46 H 0.09 0.99 7.77 -51.93 -0.40 0.59 16 47 H 0.05 0.57 6.47 -51.93 -0.34 0.23 16 LS Contribution 387.97 15.07 5.85 5.85 Total: -1.00 -37.16 387.97 -9.46 -46.62 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.55 Total: -1.08 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -0.04 Total: -0.57 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.65 Total: -44.74 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.18 Total: -18.61 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.16 -9.46 -46.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671066122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.331 kcal (2) G-P(sol) polarization free energy of solvation -37.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds