Wall clock time and date at job start Wed Apr 1 2020 00:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47486 * 2 1 4 4 C 1.50697 * 109.46961 * 239.99568 * 2 1 3 5 5 N 1.34777 * 120.00075 * 60.00894 * 4 2 1 6 6 O 1.21283 * 120.00261 * 240.00354 * 4 2 1 7 7 N 1.46906 * 109.46897 * 119.99976 * 2 1 3 8 8 C 1.47993 * 110.99656 * 300.77434 * 7 2 1 9 9 C 1.55214 * 104.99099 * 213.96591 * 8 7 2 10 10 C 1.53495 * 101.46414 * 35.39234 * 9 8 7 11 11 C 1.53474 * 111.80547 * 204.14010 * 10 9 8 12 12 C 1.54626 * 102.75005 * 272.88094 * 11 10 9 13 13 N 1.47158 * 107.34013 * 339.33093 * 12 11 10 14 14 C 1.34770 * 125.59998 * 179.10381 * 13 12 11 15 15 O 1.21277 * 120.00149 * 179.97438 * 14 13 12 16 16 C 1.50701 * 120.00143 * 359.97417 * 14 13 12 17 17 S 1.81003 * 109.47183 * 179.97438 * 16 14 13 18 18 C 1.76207 * 99.99864 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99851 * 0.02562 * 18 17 16 20 20 C 1.38789 * 119.99886 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00279 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00090 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46615 * 89.99982 * 22 20 18 24 24 H 1.48493 * 109.47144 * 209.99896 * 22 20 18 25 25 H 1.48496 * 109.46678 * 330.00062 * 22 20 18 26 26 C 1.47752 * 108.79842 * 359.08464 * 13 12 11 27 27 C 1.47858 * 111.00046 * 180.02562 * 7 2 1 28 28 H 1.09000 * 109.47486 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47362 * 300.00723 * 1 2 3 30 30 H 1.09002 * 109.46716 * 60.00082 * 1 2 3 31 31 H 0.96996 * 119.99636 * 359.97438 * 5 4 2 32 32 H 0.97001 * 119.99894 * 180.02562 * 5 4 2 33 33 H 1.08997 * 110.33839 * 332.84247 * 8 7 2 34 34 H 1.08997 * 110.34181 * 95.08738 * 8 7 2 35 35 H 1.08991 * 111.02627 * 277.35033 * 9 8 7 36 36 H 1.08995 * 111.06242 * 153.45419 * 9 8 7 37 37 H 1.09007 * 110.75381 * 31.19528 * 11 10 9 38 38 H 1.09003 * 110.75720 * 154.56433 * 11 10 9 39 39 H 1.09005 * 109.86723 * 98.76599 * 12 11 10 40 40 H 1.08998 * 109.87033 * 219.74906 * 12 11 10 41 41 H 1.08996 * 109.47151 * 300.00541 * 16 14 13 42 42 H 1.09005 * 109.47200 * 59.99925 * 16 14 13 43 43 H 0.97004 * 120.00338 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.39328 * 263.55520 * 26 13 12 45 45 H 1.08995 * 110.39851 * 141.15471 * 26 13 12 46 46 H 1.09005 * 110.00092 * 243.70864 * 27 7 2 47 47 H 1.09003 * 110.00452 * 5.05249 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 1.7068 -0.2500 -2.4545 6 8 2.7295 -1.6966 -1.1191 7 7 2.0196 -0.6925 1.1995 8 6 1.5298 -0.0322 2.4301 9 6 2.6774 -0.2028 3.4612 10 6 3.9156 -0.0860 2.5616 11 6 5.1355 -0.7848 3.1773 12 6 5.7484 0.3205 4.0682 13 7 5.2482 1.6121 3.5711 14 6 5.5393 2.8198 4.0936 15 8 5.0692 3.8231 3.6005 16 6 6.4491 2.9235 5.2905 17 16 6.6448 4.6631 5.7506 18 6 7.7233 4.4942 7.1338 19 1 8.0524 3.5139 7.4455 20 6 8.1499 5.6210 7.8228 21 7 7.7492 6.8158 7.4427 22 14 9.2927 5.4420 9.2896 23 1 10.7030 5.4953 8.8276 24 1 9.0438 6.5478 10.2489 25 1 9.0396 4.1404 9.9582 26 6 4.3747 1.3674 2.4048 27 6 3.4977 -0.7117 1.2340 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.1490 0.5385 -2.5435 32 1 2.0298 -0.7076 -3.2465 33 1 1.3422 1.0252 2.2436 34 1 0.6237 -0.5213 2.7875 35 1 2.6319 -1.1815 3.9386 36 1 2.6576 0.5940 4.2047 37 1 4.8278 -1.6399 3.7793 38 1 5.8382 -1.0898 2.4018 39 1 5.4381 0.1765 5.1032 40 1 6.8358 0.2908 3.9999 41 1 6.0154 2.3730 6.1253 42 1 7.4234 2.5014 5.0440 43 1 8.0471 7.6033 7.9244 44 1 4.9350 1.4909 1.4780 45 1 3.5177 2.0406 2.4241 46 1 3.8586 -1.7387 1.1762 47 1 3.8977 -0.1284 0.4047 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671066122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:42 Heat of formation + Delta-G solvation = -91.494040 kcal Electronic energy + Delta-G solvation = -27850.629768 eV Core-core repulsion = 23965.193895 eV Total energy + Delta-G solvation = -3885.435872 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.95393 -40.77007 -39.62735 -37.53240 -35.03679 -34.60067 -34.05161 -31.91974 -30.95060 -30.33330 -29.53094 -27.70917 -26.16716 -25.43768 -23.84958 -22.48784 -21.00820 -20.72360 -20.39767 -19.55390 -18.43725 -18.10684 -17.71236 -17.30478 -16.89686 -16.71455 -16.53508 -16.22962 -15.78618 -15.72908 -15.44225 -15.09496 -14.65122 -14.49214 -14.26608 -14.12751 -13.92299 -13.68802 -13.42025 -13.30330 -13.18097 -13.11902 -13.02736 -12.90089 -12.77988 -12.62951 -12.46682 -12.22608 -11.88076 -11.71955 -11.59614 -11.44254 -11.15478 -11.01535 -10.82632 -10.61075 -10.30850 -9.74745 -9.32908 -8.69936 -8.35951 -6.14909 1.21911 1.41983 1.43657 1.52044 1.55318 1.64684 2.04804 2.25952 2.42787 2.98148 2.98297 3.16240 3.34245 3.40085 3.54377 3.80846 3.93400 3.97310 4.03648 4.14094 4.14584 4.21629 4.25943 4.34479 4.42014 4.44132 4.50544 4.62185 4.64427 4.75010 4.81712 4.88449 4.94643 4.95636 5.02353 5.11269 5.19566 5.21152 5.26111 5.31945 5.40385 5.85102 5.89824 6.00284 6.18514 6.34517 6.48817 7.05045 7.06322 7.36786 8.73355 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026402 B = 0.002131 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.273298 B =13134.529227 C =13431.169196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.052 3.948 3 H 0.074 0.926 4 C 0.517 3.483 5 N -0.838 5.838 6 O -0.571 6.571 7 N -0.517 5.517 8 C 0.045 3.955 9 C -0.110 4.110 10 C -0.088 4.088 11 C -0.104 4.104 12 C 0.092 3.908 13 N -0.614 5.614 14 C 0.546 3.454 15 O -0.568 6.568 16 C -0.119 4.119 17 S -0.151 6.151 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.257 1.257 26 C 0.122 3.878 27 C 0.084 3.916 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.416 0.584 32 H 0.408 0.592 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.271 0.729 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.554 -20.110 -15.840 29.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.060 4.060 3 H 0.091 0.909 4 C 0.302 3.698 5 N -0.404 5.404 6 O -0.449 6.449 7 N -0.242 5.242 8 C -0.082 4.082 9 C -0.148 4.148 10 C -0.090 4.090 11 C -0.142 4.142 12 C -0.030 4.030 13 N -0.349 5.349 14 C 0.335 3.665 15 O -0.446 6.446 16 C -0.270 4.270 17 S 0.077 5.923 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.181 1.181 26 C 0.000 4.000 27 C -0.044 4.044 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.247 0.753 32 H 0.240 0.760 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.103 0.897 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.004 -19.500 -16.295 29.511 hybrid contribution 1.456 0.460 0.794 1.721 sum -13.548 -19.040 -15.501 28.042 Atomic orbital electron populations 1.21822 0.90006 1.03415 1.04294 1.21916 0.98890 0.96058 0.89132 0.90854 1.20718 0.79122 0.83922 0.86062 1.43717 1.55460 1.34002 1.07177 1.90735 1.39154 1.27720 1.87301 1.63685 1.08329 1.51103 1.01061 1.23200 0.98925 0.97391 0.88708 1.22515 0.92144 1.03364 0.96741 1.21802 0.96912 0.93036 0.97229 1.22476 0.95560 0.96947 0.99171 1.22411 0.99816 0.81303 0.99446 1.48536 1.48874 1.05763 1.31717 1.19782 0.80778 0.82045 0.83942 1.90678 1.54331 1.36708 1.62931 1.23293 1.02036 1.02964 0.98674 1.85568 1.63803 1.03480 1.39490 1.23178 1.33530 0.96511 1.16067 0.89929 1.26145 0.98055 0.93887 1.01094 1.70184 1.44305 0.98826 1.41442 0.84939 0.77762 0.78577 0.76613 1.19297 1.20220 1.18127 1.22089 0.93373 0.96377 0.88176 1.22342 0.87358 1.00969 0.93777 0.91898 0.90609 0.89323 0.75302 0.76046 0.93367 0.88505 0.88549 0.91457 0.87122 0.89374 0.90080 0.90355 0.87509 0.87702 0.91953 0.91977 0.92032 0.89731 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.97 71.98 0.65 -0.55 16 2 C 0.05 0.72 2.07 44.17 0.09 0.81 16 3 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 4 C 0.52 8.43 6.83 87.66 0.60 9.03 16 5 N -0.84 -6.65 8.77 -173.53 -1.52 -8.17 16 6 O -0.57 -14.35 15.64 -3.04 -0.05 -14.40 16 7 N -0.52 -8.77 4.84 -866.05 -4.19 -12.96 16 8 C 0.04 0.66 5.34 86.85 0.46 1.13 16 9 C -0.11 -1.75 5.96 31.52 0.19 -1.57 16 10 C -0.09 -1.54 0.61 -51.91 -0.03 -1.58 16 11 C -0.10 -1.52 5.85 31.31 0.18 -1.34 16 12 C 0.09 1.83 6.46 86.81 0.56 2.39 16 13 N -0.61 -17.56 3.34 -813.32 -2.72 -20.28 16 14 C 0.55 21.57 7.87 87.66 0.69 22.26 16 15 O -0.57 -27.55 16.14 -3.02 -0.05 -27.60 16 16 C -0.12 -4.91 5.35 71.24 0.38 -4.53 16 17 S -0.15 -8.51 20.57 -56.49 -1.16 -9.68 16 18 C -0.55 -31.37 9.50 67.95 0.65 -30.72 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.74 5.49 84.85 0.47 1.20 16 21 N -0.91 -56.22 13.22 21.65 0.29 -55.94 16 22 Si 1.00 43.69 29.55 68.60 2.03 45.71 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 26 C 0.12 2.99 5.76 86.21 0.50 3.48 16 27 C 0.08 1.55 4.48 85.99 0.38 1.93 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.62 7.03 -2.39 -0.02 0.60 16 30 H 0.09 0.33 7.56 -2.39 -0.02 0.31 16 31 H 0.42 0.74 8.25 -92.71 -0.76 -0.02 16 32 H 0.41 2.69 8.93 -92.71 -0.83 1.86 16 33 H 0.05 0.74 7.56 -2.39 -0.02 0.72 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.29 7.85 -2.39 -0.02 1.27 16 36 H 0.07 1.29 8.00 -2.39 -0.02 1.27 16 37 H 0.11 1.19 7.80 -2.38 -0.02 1.17 16 38 H 0.09 1.20 8.07 -2.39 -0.02 1.18 16 39 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 42 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.06 1.55 7.78 -2.39 -0.02 1.53 16 45 H 0.06 1.68 7.89 -2.39 -0.02 1.66 16 46 H 0.08 1.73 7.77 -2.38 -0.02 1.71 16 47 H 0.04 0.90 6.47 -2.39 -0.02 0.88 16 Total: -1.00 -83.65 387.97 -2.22 -85.86 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -0.60 Total: 15.50 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 5.76 Total: 1.95 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -8.15 Total: -97.35 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -0.10 Total: -42.00 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.68 kcal Total: -83.65 -2.22 -85.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671066122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.630 kcal (2) G-P(sol) polarization free energy of solvation -83.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds