Wall clock time and date at job start Wed Apr 1 2020 00:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47154 * 2 1 4 4 C 1.50695 * 109.47326 * 240.00107 * 2 1 3 5 5 N 1.34779 * 120.00308 * 59.99691 * 4 2 1 6 6 O 1.21288 * 120.00207 * 240.00126 * 4 2 1 7 7 N 1.46904 * 109.47323 * 119.99660 * 2 1 3 8 8 C 1.48026 * 110.99919 * 301.07108 * 7 2 1 9 9 C 1.54346 * 107.02267 * 214.43886 * 8 7 2 10 10 C 1.53079 * 104.72026 * 2.14430 * 9 8 7 11 11 C 1.53646 * 111.78914 * 141.42996 * 10 9 8 12 12 C 1.55191 * 101.41757 * 155.65220 * 11 10 9 13 13 N 1.47564 * 105.00757 * 324.51129 * 12 11 10 14 14 C 1.34773 * 125.67240 * 203.89508 * 13 12 11 15 15 O 1.21286 * 119.99824 * 179.97438 * 14 13 12 16 16 C 1.50696 * 120.00033 * 359.95783 * 14 13 12 17 17 S 1.81007 * 109.46949 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99596 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00228 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99720 * 179.97438 * 18 17 16 21 21 N 1.31633 * 119.99739 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00187 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47021 * 60.00359 * 22 20 18 24 24 H 1.48503 * 109.47345 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47338 * 300.00572 * 22 20 18 26 26 C 1.47408 * 108.64880 * 23.85711 * 13 12 11 27 27 C 1.48813 * 111.00208 * 183.39033 * 7 2 1 28 28 H 1.09001 * 109.46902 * 55.26032 * 1 2 3 29 29 H 1.09000 * 109.46927 * 175.26201 * 1 2 3 30 30 H 1.08998 * 109.46934 * 295.26336 * 1 2 3 31 31 H 0.96994 * 119.99747 * 0.02562 * 5 4 2 32 32 H 0.97003 * 120.00292 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.92477 * 333.78179 * 8 7 2 34 34 H 1.09005 * 109.92473 * 95.09838 * 8 7 2 35 35 H 1.08993 * 110.38606 * 120.95304 * 9 8 7 36 36 H 1.08997 * 110.39093 * 243.22051 * 9 8 7 37 37 H 1.09005 * 111.03295 * 273.68609 * 11 10 9 38 38 H 1.08997 * 111.03121 * 37.61896 * 11 10 9 39 39 H 1.08994 * 110.33138 * 205.62848 * 12 11 10 40 40 H 1.09000 * 110.33225 * 83.39638 * 12 11 10 41 41 H 1.08994 * 109.47304 * 300.00002 * 16 14 13 42 42 H 1.08996 * 109.47123 * 60.00159 * 16 14 13 43 43 H 0.97004 * 119.99909 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.98488 * 238.53715 * 26 13 12 45 45 H 1.09006 * 109.98601 * 117.23837 * 26 13 12 46 46 H 1.09001 * 110.69715 * 276.59182 * 27 7 2 47 47 H 1.09000 * 110.69066 * 39.78428 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.7068 -0.2500 -2.4546 6 8 2.7297 -1.6965 -1.1192 7 7 2.0197 -0.6924 1.1995 8 6 1.5242 -0.0362 2.4303 9 6 2.6379 -0.1653 3.4910 10 6 3.7852 -0.8736 2.7662 11 6 5.1541 -0.3105 3.1781 12 6 6.0862 -1.5122 2.8691 13 7 5.2880 -2.7092 3.1972 14 6 5.7837 -3.9196 3.5220 15 8 5.0300 -4.8357 3.7744 16 6 7.2744 -4.1349 3.5712 17 16 7.6214 -5.8499 4.0344 18 6 9.3830 -5.8216 4.0150 19 1 9.9057 -4.9106 3.7639 20 6 10.0990 -6.9703 4.3226 21 7 9.4618 -8.0808 4.6282 22 14 11.9666 -6.9405 4.3014 23 1 12.4569 -5.9390 5.2822 24 1 12.4872 -8.2836 4.6626 25 1 12.4406 -6.5755 2.9422 26 6 3.8584 -2.3604 3.1115 27 6 3.5051 -0.6415 1.2757 28 1 -0.3633 0.5856 -0.8445 29 1 -0.3633 -1.0242 -0.0849 30 1 -0.3633 0.4386 0.9294 31 1 1.1494 0.5388 -2.5436 32 1 2.0299 -0.7074 -3.2466 33 1 1.3190 1.0161 2.2334 34 1 0.6197 -0.5350 2.7788 35 1 2.9547 0.8206 3.8309 36 1 2.2921 -0.7637 4.3339 37 1 5.4190 0.5561 2.5722 38 1 5.1723 -0.0640 4.2397 39 1 6.9788 -1.4694 3.4932 40 1 6.3606 -1.5173 1.8142 41 1 7.7039 -3.9289 2.5908 42 1 7.7143 -3.4637 4.3088 43 1 9.9621 -8.8835 4.8435 44 1 3.3718 -2.5448 4.0694 45 1 3.3776 -2.9486 2.3298 46 1 3.9491 -1.4335 0.6725 47 1 3.8735 0.3352 0.9622 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671066124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:48 Heat of formation + Delta-G solvation = -59.197798 kcal Electronic energy + Delta-G solvation = -27853.202429 eV Core-core repulsion = 23969.167027 eV Total energy + Delta-G solvation = -3884.035402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98244 -39.75315 -38.40034 -36.49118 -34.33770 -33.30935 -32.36676 -30.84176 -29.69551 -29.56044 -28.30344 -25.51219 -25.02059 -24.83668 -23.03884 -21.70094 -20.36784 -19.37699 -19.23445 -17.93385 -17.57657 -17.23061 -16.42651 -16.08520 -15.87431 -15.48195 -15.25505 -14.78637 -14.73807 -14.34926 -14.08629 -13.93925 -13.82452 -13.61481 -13.16587 -12.95525 -12.73070 -12.55655 -12.40943 -12.37876 -12.17590 -12.00840 -11.91738 -11.68230 -11.49097 -11.01810 -10.99188 -10.97777 -10.77982 -10.71692 -10.69897 -10.07641 -10.01728 -9.75594 -9.25380 -8.99964 -8.72446 -8.32845 -8.15113 -6.42499 -6.15160 -3.85168 2.32044 2.96362 3.03863 3.22040 3.27735 3.30727 3.33964 3.57586 3.72108 4.17577 4.23481 4.26145 4.29906 4.44355 4.53633 4.61413 4.72184 4.79278 5.00387 5.04365 5.11639 5.13569 5.19494 5.22348 5.34760 5.41636 5.45470 5.54786 5.57601 5.61631 5.67169 5.71375 5.79360 5.86275 5.89081 6.00560 6.09299 6.14745 6.23166 6.39260 6.50902 6.56623 6.59264 6.97124 7.65173 7.83576 7.95367 8.41274 8.71548 9.29592 10.92244 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019888 B = 0.002258 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.572077 B =12397.100629 C =12855.717472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.056 3.944 3 H 0.067 0.933 4 C 0.518 3.482 5 N -0.859 5.859 6 O -0.515 6.515 7 N -0.496 5.496 8 C 0.037 3.963 9 C -0.116 4.116 10 C -0.075 4.075 11 C -0.120 4.120 12 C 0.101 3.899 13 N -0.626 5.626 14 C 0.547 3.453 15 O -0.516 6.516 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.071 0.929 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.131 3.869 27 C 0.052 3.948 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.398 0.602 32 H 0.403 0.597 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.268 0.732 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.105 0.895 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.451 26.858 -10.313 34.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.057 4.057 3 H 0.084 0.916 4 C 0.301 3.699 5 N -0.424 5.424 6 O -0.388 6.388 7 N -0.220 5.220 8 C -0.090 4.090 9 C -0.155 4.155 10 C -0.076 4.076 11 C -0.158 4.158 12 C -0.022 4.022 13 N -0.364 5.364 14 C 0.336 3.664 15 O -0.390 6.390 16 C -0.296 4.296 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.200 1.200 26 C 0.008 3.992 27 C -0.075 4.075 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.226 0.774 32 H 0.234 0.766 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.123 0.877 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -19.275 24.025 -9.627 32.271 hybrid contribution 2.187 2.286 -0.799 3.263 sum -17.088 26.311 -10.426 33.060 Atomic orbital electron populations 1.21829 0.91842 1.03652 1.02786 1.21776 0.97459 0.96006 0.90446 0.91572 1.20462 0.79951 0.84618 0.84838 1.43858 1.56504 1.33917 1.08102 1.90802 1.36409 1.25263 1.86355 1.64684 1.07812 1.49720 0.99832 1.22998 0.98929 0.97158 0.89934 1.22307 0.94153 1.00898 0.98108 1.21448 0.95257 0.95575 0.95339 1.22677 0.93469 0.97329 1.02327 1.22332 0.94992 0.84132 1.00789 1.48631 1.06856 1.10116 1.70764 1.19980 0.90436 0.80298 0.75695 1.90707 1.60186 1.40526 1.47606 1.23500 0.93628 1.07577 1.04908 1.85407 1.06736 1.01627 1.89638 1.22823 0.91201 0.99723 1.54504 0.91035 1.24992 0.99434 0.94569 0.94627 1.70018 1.36037 1.00780 1.43475 0.86230 0.83201 0.77414 0.78668 1.19971 1.20836 1.19963 1.21671 0.82633 0.92998 1.01852 1.23240 0.87465 1.01318 0.95520 0.91746 0.90963 0.91062 0.77352 0.76621 0.93579 0.89829 0.90715 0.90089 0.89953 0.90069 0.90334 0.91445 0.89382 0.89434 0.92176 0.91574 0.90452 0.87691 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 9.02 37.16 0.34 -0.35 16 2 C 0.06 0.39 2.16 -68.86 -0.15 0.24 16 3 H 0.07 0.35 8.01 -51.92 -0.42 -0.07 16 4 C 0.52 4.67 7.18 -10.99 -0.08 4.60 16 5 N -0.86 -4.12 8.78 31.22 0.27 -3.85 16 6 O -0.51 -7.37 15.20 5.55 0.08 -7.28 16 7 N -0.50 -4.61 4.87 -224.27 -1.09 -5.70 16 8 C 0.04 0.26 5.36 -2.50 -0.01 0.25 16 9 C -0.12 -0.88 6.14 -25.99 -0.16 -1.03 16 10 C -0.07 -0.74 0.68 -154.01 -0.10 -0.84 16 11 C -0.12 -1.05 5.94 -25.24 -0.15 -1.20 16 12 C 0.10 1.21 6.64 -2.30 -0.02 1.19 16 13 N -0.63 -10.15 3.34 -170.85 -0.57 -10.73 16 14 C 0.55 11.58 7.87 -10.99 -0.09 11.50 16 15 O -0.52 -13.00 16.19 5.55 0.09 -12.91 16 16 C -0.15 -3.19 5.17 36.00 0.19 -3.01 16 17 S -0.06 -1.73 20.57 -107.50 -2.21 -3.95 16 18 C -0.53 -15.71 9.50 30.94 0.29 -15.42 16 19 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 20 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 21 N -0.87 -26.86 13.22 55.49 0.73 -26.13 16 22 Si 0.92 21.93 29.55 -169.99 -5.02 16.91 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.13 1.86 6.09 -3.64 -0.02 1.84 16 27 C 0.05 0.53 4.42 -2.54 -0.01 0.52 16 28 H 0.06 0.15 7.70 -51.93 -0.40 -0.25 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.29 6.82 -51.93 -0.35 -0.06 16 31 H 0.40 0.59 8.34 -40.82 -0.34 0.25 16 32 H 0.40 1.80 8.93 -40.82 -0.36 1.44 16 33 H 0.05 0.24 7.50 -51.93 -0.39 -0.15 16 34 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 35 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 36 H 0.08 0.64 7.43 -51.93 -0.39 0.25 16 37 H 0.08 0.56 7.79 -51.93 -0.40 0.16 16 38 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 39 H 0.08 0.90 7.49 -51.93 -0.39 0.52 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 42 H 0.09 1.77 7.85 -51.92 -0.41 1.36 16 43 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.07 0.96 7.44 -51.93 -0.39 0.57 16 45 H 0.08 1.28 7.80 -51.93 -0.41 0.87 16 46 H 0.10 1.44 6.41 -51.93 -0.33 1.11 16 47 H 0.04 0.38 7.62 -51.93 -0.40 -0.02 16 LS Contribution 386.46 15.07 5.82 5.82 Total: -1.00 -39.11 386.46 -9.40 -48.51 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -7.43 Total: -1.00 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.07 Total: 0.31 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.66 Total: -46.41 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.17 Total: -20.20 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.11 -9.40 -48.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671066124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.687 kcal (2) G-P(sol) polarization free energy of solvation -39.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds