Wall clock time and date at job start Wed Apr 1 2020 00:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47154 * 2 1 4 4 C 1.50695 * 109.47326 * 240.00107 * 2 1 3 5 5 N 1.34779 * 120.00308 * 59.99691 * 4 2 1 6 6 O 1.21288 * 120.00207 * 240.00126 * 4 2 1 7 7 N 1.46904 * 109.47323 * 119.99660 * 2 1 3 8 8 C 1.48026 * 110.99919 * 301.07108 * 7 2 1 9 9 C 1.54346 * 107.02267 * 214.43886 * 8 7 2 10 10 C 1.53079 * 104.72026 * 2.14430 * 9 8 7 11 11 C 1.53646 * 111.78914 * 141.42996 * 10 9 8 12 12 C 1.55191 * 101.41757 * 155.65220 * 11 10 9 13 13 N 1.47564 * 105.00757 * 324.51129 * 12 11 10 14 14 C 1.34773 * 125.67240 * 203.89508 * 13 12 11 15 15 O 1.21286 * 119.99824 * 179.97438 * 14 13 12 16 16 C 1.50696 * 120.00033 * 359.95783 * 14 13 12 17 17 S 1.81007 * 109.46949 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99596 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00228 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99720 * 179.97438 * 18 17 16 21 21 N 1.31633 * 119.99739 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00187 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47021 * 60.00359 * 22 20 18 24 24 H 1.48503 * 109.47345 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47338 * 300.00572 * 22 20 18 26 26 C 1.47408 * 108.64880 * 23.85711 * 13 12 11 27 27 C 1.48813 * 111.00208 * 183.39033 * 7 2 1 28 28 H 1.09001 * 109.46902 * 55.26032 * 1 2 3 29 29 H 1.09000 * 109.46927 * 175.26201 * 1 2 3 30 30 H 1.08998 * 109.46934 * 295.26336 * 1 2 3 31 31 H 0.96994 * 119.99747 * 0.02562 * 5 4 2 32 32 H 0.97003 * 120.00292 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.92477 * 333.78179 * 8 7 2 34 34 H 1.09005 * 109.92473 * 95.09838 * 8 7 2 35 35 H 1.08993 * 110.38606 * 120.95304 * 9 8 7 36 36 H 1.08997 * 110.39093 * 243.22051 * 9 8 7 37 37 H 1.09005 * 111.03295 * 273.68609 * 11 10 9 38 38 H 1.08997 * 111.03121 * 37.61896 * 11 10 9 39 39 H 1.08994 * 110.33138 * 205.62848 * 12 11 10 40 40 H 1.09000 * 110.33225 * 83.39638 * 12 11 10 41 41 H 1.08994 * 109.47304 * 300.00002 * 16 14 13 42 42 H 1.08996 * 109.47123 * 60.00159 * 16 14 13 43 43 H 0.97004 * 119.99909 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.98488 * 238.53715 * 26 13 12 45 45 H 1.09006 * 109.98601 * 117.23837 * 26 13 12 46 46 H 1.09001 * 110.69715 * 276.59182 * 27 7 2 47 47 H 1.09000 * 110.69066 * 39.78428 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.7068 -0.2500 -2.4546 6 8 2.7297 -1.6965 -1.1192 7 7 2.0197 -0.6924 1.1995 8 6 1.5242 -0.0362 2.4303 9 6 2.6379 -0.1653 3.4910 10 6 3.7852 -0.8736 2.7662 11 6 5.1541 -0.3105 3.1781 12 6 6.0862 -1.5122 2.8691 13 7 5.2880 -2.7092 3.1972 14 6 5.7837 -3.9196 3.5220 15 8 5.0300 -4.8357 3.7744 16 6 7.2744 -4.1349 3.5712 17 16 7.6214 -5.8499 4.0344 18 6 9.3830 -5.8216 4.0150 19 1 9.9057 -4.9106 3.7639 20 6 10.0990 -6.9703 4.3226 21 7 9.4618 -8.0808 4.6282 22 14 11.9666 -6.9405 4.3014 23 1 12.4569 -5.9390 5.2822 24 1 12.4872 -8.2836 4.6626 25 1 12.4406 -6.5755 2.9422 26 6 3.8584 -2.3604 3.1115 27 6 3.5051 -0.6415 1.2757 28 1 -0.3633 0.5856 -0.8445 29 1 -0.3633 -1.0242 -0.0849 30 1 -0.3633 0.4386 0.9294 31 1 1.1494 0.5388 -2.5436 32 1 2.0299 -0.7074 -3.2466 33 1 1.3190 1.0161 2.2334 34 1 0.6197 -0.5350 2.7788 35 1 2.9547 0.8206 3.8309 36 1 2.2921 -0.7637 4.3339 37 1 5.4190 0.5561 2.5722 38 1 5.1723 -0.0640 4.2397 39 1 6.9788 -1.4694 3.4932 40 1 6.3606 -1.5173 1.8142 41 1 7.7039 -3.9289 2.5908 42 1 7.7143 -3.4637 4.3088 43 1 9.9621 -8.8835 4.8435 44 1 3.3718 -2.5448 4.0694 45 1 3.3776 -2.9486 2.3298 46 1 3.9491 -1.4335 0.6725 47 1 3.8735 0.3352 0.9622 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671066124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:47 Heat of formation + Delta-G solvation = -91.668289 kcal Electronic energy + Delta-G solvation = -27854.610455 eV Core-core repulsion = 23969.167027 eV Total energy + Delta-G solvation = -3885.443428 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.82709 -40.73636 -39.62304 -37.54104 -35.06493 -34.60074 -34.11581 -31.88031 -30.92782 -30.25966 -29.39724 -27.70546 -26.03084 -25.50017 -24.00962 -22.32234 -21.03717 -20.73939 -20.23029 -19.50555 -18.46002 -18.07823 -17.78840 -17.26398 -16.89691 -16.69114 -16.45020 -16.09400 -15.95146 -15.67865 -15.36089 -15.03846 -14.70247 -14.55128 -14.43269 -14.02358 -13.73751 -13.63148 -13.53976 -13.20314 -13.14637 -13.06616 -12.98804 -12.86844 -12.66787 -12.64257 -12.45079 -12.18077 -11.86307 -11.68926 -11.49769 -11.49122 -11.13969 -10.97572 -10.78756 -10.61545 -10.31027 -9.72022 -9.29005 -8.70775 -8.35387 -6.15211 1.21919 1.43306 1.43730 1.53581 1.54859 1.67384 2.08467 2.26290 2.45716 2.98225 2.98968 3.22093 3.44888 3.48048 3.51428 3.83551 3.91940 3.97970 4.10616 4.15929 4.18354 4.22306 4.31805 4.34889 4.40011 4.58550 4.60856 4.65108 4.72452 4.76791 4.85094 4.88496 4.94642 4.99571 5.05259 5.10058 5.22627 5.27053 5.31745 5.34612 5.39644 5.87528 5.93171 6.05289 6.18383 6.38602 6.53732 7.04697 7.09029 7.41360 8.73962 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019888 B = 0.002258 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.572077 B =12397.100629 C =12855.717472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.057 3.943 3 H 0.096 0.904 4 C 0.510 3.490 5 N -0.838 5.838 6 O -0.580 6.580 7 N -0.527 5.527 8 C 0.040 3.960 9 C -0.111 4.111 10 C -0.067 4.067 11 C -0.104 4.104 12 C 0.087 3.913 13 N -0.618 5.618 14 C 0.542 3.458 15 O -0.571 6.571 16 C -0.116 4.116 17 S -0.154 6.154 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.002 2.998 23 H -0.259 1.259 24 H -0.278 1.278 25 H -0.262 1.262 26 C 0.130 3.870 27 C 0.060 3.940 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.418 0.582 32 H 0.405 0.595 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.272 0.728 44 H 0.059 0.941 45 H 0.043 0.957 46 H 0.061 0.939 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.992 31.674 -10.749 37.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.055 4.055 3 H 0.114 0.886 4 C 0.295 3.705 5 N -0.403 5.403 6 O -0.459 6.459 7 N -0.252 5.252 8 C -0.087 4.087 9 C -0.149 4.149 10 C -0.068 4.068 11 C -0.142 4.142 12 C -0.035 4.035 13 N -0.352 5.352 14 C 0.330 3.670 15 O -0.450 6.450 16 C -0.267 4.267 17 S 0.073 5.927 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.823 3.177 23 H -0.184 1.184 24 H -0.203 1.203 25 H -0.187 1.187 26 C 0.008 3.992 27 C -0.068 4.068 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.249 0.751 32 H 0.236 0.764 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.134 0.866 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.079 0.921 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.863 28.959 -10.109 36.009 hybrid contribution 1.900 0.869 -0.778 2.229 sum -16.963 29.828 -10.886 36.000 Atomic orbital electron populations 1.21845 0.90168 1.02802 1.04803 1.21886 0.98590 0.96593 0.88423 0.88637 1.21027 0.79073 0.83936 0.86468 1.43714 1.55493 1.34012 1.07071 1.90790 1.39543 1.28214 1.87342 1.64571 1.07291 1.51770 1.01587 1.23027 0.98419 0.98605 0.88655 1.22330 0.93098 1.01793 0.97724 1.21395 0.97305 0.92217 0.95911 1.22718 0.91092 0.96583 1.03844 1.22743 0.95780 0.83583 1.01392 1.48637 1.08632 1.09764 1.68185 1.19870 0.89842 0.81360 0.75954 1.90676 1.61017 1.42740 1.50590 1.23278 0.94683 1.02805 1.05955 1.85631 1.08324 1.08299 1.90412 1.23150 0.90832 1.00568 1.54830 0.89851 1.26199 1.05636 0.93829 0.93644 1.70195 1.38515 1.01695 1.44435 0.84954 0.75371 0.77912 0.79420 1.18379 1.20269 1.18675 1.21788 0.80986 0.96132 1.00325 1.23008 0.88330 1.00816 0.94604 0.88818 0.93428 0.89769 0.75084 0.76382 0.90629 0.90144 0.87716 0.90828 0.86566 0.88679 0.89316 0.90914 0.87956 0.87191 0.91935 0.92287 0.93863 0.92068 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.02 71.98 0.65 -0.32 16 2 C 0.06 0.66 2.16 44.17 0.10 0.76 16 3 H 0.10 0.57 8.01 -2.38 -0.02 0.55 16 4 C 0.51 8.91 7.18 87.66 0.63 9.54 16 5 N -0.84 -6.77 8.78 -173.53 -1.52 -8.29 16 6 O -0.58 -17.51 15.20 -3.05 -0.05 -17.56 16 7 N -0.53 -9.16 4.87 -863.46 -4.21 -13.37 16 8 C 0.04 0.45 5.36 86.54 0.46 0.91 16 9 C -0.11 -1.34 6.14 31.08 0.19 -1.15 16 10 C -0.07 -1.21 0.68 -51.86 -0.04 -1.25 16 11 C -0.10 -1.48 5.94 31.56 0.19 -1.29 16 12 C 0.09 1.93 6.64 86.93 0.58 2.51 16 13 N -0.62 -20.40 3.34 -812.83 -2.72 -23.12 16 14 C 0.54 23.88 7.87 87.66 0.69 24.57 16 15 O -0.57 -30.77 16.19 -3.05 -0.05 -30.81 16 16 C -0.12 -5.19 5.17 71.23 0.37 -4.82 16 17 S -0.15 -9.16 20.57 -56.49 -1.16 -10.32 16 18 C -0.55 -32.54 9.50 67.96 0.65 -31.89 16 19 H 0.08 4.59 7.80 -2.91 -0.02 4.57 16 20 C 0.01 0.68 5.49 84.86 0.47 1.14 16 21 N -0.91 -57.97 13.22 21.65 0.29 -57.68 16 22 Si 1.00 44.86 29.55 68.60 2.03 46.89 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 25 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 26 C 0.13 3.83 6.09 86.14 0.52 4.35 16 27 C 0.06 1.15 4.42 86.08 0.38 1.53 16 28 H 0.09 0.09 7.70 -2.39 -0.02 0.07 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.40 6.82 -2.39 -0.02 0.38 16 31 H 0.42 0.05 8.34 -92.71 -0.77 -0.72 16 32 H 0.41 3.27 8.93 -92.71 -0.83 2.44 16 33 H 0.08 0.42 7.50 -2.39 -0.02 0.40 16 34 H 0.08 0.95 8.11 -2.38 -0.02 0.93 16 35 H 0.10 0.70 7.89 -2.39 -0.02 0.68 16 36 H 0.07 1.03 7.43 -2.39 -0.02 1.01 16 37 H 0.12 0.97 7.79 -2.38 -0.02 0.95 16 38 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 39 H 0.09 1.82 7.49 -2.39 -0.02 1.81 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.10 4.24 8.14 -2.40 -0.02 4.23 16 42 H 0.11 4.38 7.85 -2.40 -0.02 4.36 16 43 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 44 H 0.06 1.80 7.44 -2.39 -0.02 1.78 16 45 H 0.04 1.57 7.80 -2.38 -0.02 1.55 16 46 H 0.06 1.76 6.41 -2.39 -0.02 1.74 16 47 H 0.07 0.94 7.62 -2.39 -0.02 0.92 16 Total: -1.00 -93.38 386.46 -2.16 -95.54 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -0.60 Total: 14.14 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.83 Total: 4.59 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -8.16 Total: -102.46 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -0.10 Total: -48.38 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: -9.16 SS G_CDS: -1.16 Total: -10.32 kcal Total: -93.38 -2.16 -95.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671066124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.871 kcal (2) G-P(sol) polarization free energy of solvation -93.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds