Wall clock time and date at job start Wed Apr 1 2020 00:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47732 * 2 1 4 4 C 1.50695 * 109.46953 * 120.00893 * 2 1 3 5 5 N 1.34776 * 119.99852 * 272.99152 * 4 2 1 6 6 O 1.21284 * 120.00203 * 92.99973 * 4 2 1 7 7 N 1.46904 * 109.46623 * 240.00361 * 2 1 3 8 8 C 1.48677 * 110.99655 * 175.95760 * 7 2 1 9 9 C 1.54707 * 104.63654 * 201.60401 * 8 7 2 10 10 C 1.53010 * 104.57089 * 23.68093 * 9 8 7 11 11 C 1.53329 * 111.69899 * 237.54547 * 10 9 8 12 12 C 1.54298 * 104.70652 * 260.07443 * 11 10 9 13 13 N 1.47592 * 107.04980 * 2.06880 * 12 11 10 14 14 C 1.34782 * 126.93505 * 154.92678 * 13 12 11 15 15 O 1.21277 * 120.00050 * 180.02562 * 14 13 12 16 16 C 1.50703 * 119.99981 * 0.02723 * 14 13 12 17 17 S 1.80991 * 109.46947 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99882 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99991 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99995 * 179.97438 * 18 17 16 21 21 N 1.31638 * 120.00167 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00245 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46609 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47358 * 119.99922 * 22 20 18 25 25 H 1.48496 * 109.47113 * 240.00313 * 22 20 18 26 26 C 1.48354 * 106.12420 * 334.92873 * 13 12 11 27 27 C 1.48859 * 111.00202 * 60.28701 * 7 2 1 28 28 H 1.08998 * 109.47682 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46887 * 299.99821 * 1 2 3 30 30 H 1.09001 * 109.47116 * 59.98984 * 1 2 3 31 31 H 0.97003 * 119.99781 * 0.02562 * 5 4 2 32 32 H 0.97000 * 119.99980 * 179.97438 * 5 4 2 33 33 H 1.09004 * 110.40249 * 82.82187 * 8 7 2 34 34 H 1.08997 * 110.40901 * 320.39429 * 8 7 2 35 35 H 1.09003 * 110.41538 * 264.90618 * 9 8 7 36 36 H 1.09005 * 110.41542 * 142.45597 * 9 8 7 37 37 H 1.09003 * 110.39506 * 141.26870 * 11 10 9 38 38 H 1.09000 * 110.49065 * 18.92876 * 11 10 9 39 39 H 1.08998 * 109.91615 * 121.42508 * 12 11 10 40 40 H 1.09001 * 109.91918 * 242.71974 * 12 11 10 41 41 H 1.09003 * 109.46973 * 300.00149 * 16 14 13 42 42 H 1.09003 * 109.47330 * 59.99510 * 16 14 13 43 43 H 0.96996 * 119.99975 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.67800 * 279.44414 * 26 13 12 45 45 H 1.08999 * 110.82268 * 156.35515 * 26 13 12 46 46 H 1.09000 * 110.46748 * 39.26129 * 27 7 2 47 47 H 1.09001 * 110.46978 * 276.67322 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 7 2.1994 -0.0291 2.3810 6 8 2.2862 -1.8957 1.1850 7 7 2.0196 -0.6925 -1.1995 8 6 3.5025 -0.6281 -1.2839 9 6 3.8198 -0.8673 -2.7790 10 6 2.5422 -0.4568 -3.5141 11 6 1.9825 -1.6049 -4.3624 12 6 2.4497 -1.2939 -5.7997 13 7 3.2676 -0.0671 -5.7329 14 6 4.2338 0.3100 -6.5937 15 8 4.8310 1.3506 -6.4170 16 6 4.5719 -0.5615 -7.7758 17 16 5.8981 0.2111 -8.7351 18 6 6.0862 -0.9849 -10.0154 19 1 5.4653 -1.8685 -10.0244 20 6 7.0317 -0.7908 -11.0128 21 7 7.7875 0.2869 -11.0027 22 14 7.2307 -2.0583 -12.3705 23 1 6.2679 -3.1684 -12.1563 24 1 6.9661 -1.4210 -13.6855 25 1 8.6160 -2.5929 -12.3494 26 6 2.8117 0.6669 -4.5270 27 6 1.5479 -0.0134 -2.4374 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 1.9961 0.9187 2.4173 32 1 2.5224 -0.4866 3.1731 33 1 3.9523 -1.4089 -0.6704 34 1 3.8587 0.3537 -0.9722 35 1 4.0397 -1.9200 -2.9574 36 1 4.6569 -0.2445 -3.0945 37 1 0.8937 -1.6188 -4.3117 38 1 2.3897 -2.5594 -4.0290 39 1 3.0494 -2.1198 -6.1821 40 1 1.5857 -1.1295 -6.4436 41 1 4.8997 -1.5397 -7.4241 42 1 3.6896 -0.6787 -8.4051 43 1 8.4485 0.4223 -11.6995 44 1 1.8980 1.2228 -4.7374 45 1 3.5918 1.3351 -4.1621 46 1 1.5779 1.0691 -2.3134 47 1 0.5398 -0.3410 -2.6914 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671066125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:50 Heat of formation + Delta-G solvation = -60.100410 kcal Electronic energy + Delta-G solvation = -27579.295607 eV Core-core repulsion = 23695.221064 eV Total energy + Delta-G solvation = -3884.074542 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.95686 -39.85551 -38.46557 -36.53758 -34.23831 -33.35620 -32.42041 -31.16455 -29.68326 -29.03966 -28.82264 -25.91517 -25.41005 -24.00873 -22.85334 -22.14845 -20.38006 -19.50678 -19.25311 -17.85537 -17.61995 -17.45250 -16.58445 -16.13299 -15.84622 -15.34326 -15.15893 -14.90332 -14.79425 -14.36446 -14.33971 -14.02776 -13.89036 -13.47186 -13.26874 -13.14640 -12.77482 -12.70528 -12.52273 -12.33287 -12.20918 -11.92337 -11.81784 -11.63637 -11.38230 -11.12657 -11.06416 -11.00845 -10.76289 -10.74292 -10.70583 -10.16446 -10.10276 -9.79527 -9.39865 -9.06613 -8.84786 -8.52164 -8.22060 -6.49340 -6.21052 -3.91492 2.23417 2.86419 2.95812 3.07838 3.22273 3.27084 3.32092 3.56057 3.62556 4.16003 4.20395 4.24433 4.24993 4.46010 4.58925 4.62254 4.78554 4.92549 4.98134 5.02187 5.07275 5.10268 5.14241 5.20357 5.30024 5.36198 5.45927 5.52684 5.55192 5.59208 5.64798 5.71745 5.75221 5.78731 5.89726 5.96283 5.98604 6.00675 6.16092 6.29804 6.38814 6.43128 6.50528 6.91244 7.60796 7.72665 7.87714 8.36380 8.57139 9.24422 10.86446 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029258 B = 0.001979 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.764328 B =14144.111724 C =14170.265130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 H 0.062 0.938 4 C 0.520 3.480 5 N -0.859 5.859 6 O -0.519 6.519 7 N -0.485 5.485 8 C 0.031 3.969 9 C -0.107 4.107 10 C -0.076 4.076 11 C -0.113 4.113 12 C 0.100 3.900 13 N -0.627 5.627 14 C 0.553 3.447 15 O -0.518 6.518 16 C -0.146 4.146 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.119 3.881 27 C 0.050 3.950 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.400 0.600 32 H 0.402 0.598 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.051 0.949 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.389 -0.002 25.383 30.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.059 4.059 3 H 0.080 0.920 4 C 0.304 3.696 5 N -0.424 5.424 6 O -0.392 6.392 7 N -0.210 5.210 8 C -0.097 4.097 9 C -0.145 4.145 10 C -0.078 4.078 11 C -0.151 4.151 12 C -0.024 4.024 13 N -0.364 5.364 14 C 0.342 3.658 15 O -0.392 6.392 16 C -0.297 4.297 17 S 0.165 5.835 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.004 4.004 27 C -0.078 4.078 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.228 0.772 32 H 0.233 0.767 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.069 0.931 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.356 0.338 25.284 30.115 hybrid contribution -0.264 -0.829 -0.676 1.102 sum -16.620 -0.491 24.608 29.699 Atomic orbital electron populations 1.21773 0.91513 1.03861 1.02722 1.21790 0.97823 0.95928 0.90359 0.91997 1.20465 0.76988 0.87545 0.84626 1.43921 1.71095 1.14135 1.13258 1.90772 1.48750 1.15239 1.84465 1.65397 1.07447 1.48443 0.99729 1.23287 0.87883 1.00640 0.97885 1.22270 0.96536 1.02826 0.92871 1.21485 0.95669 0.96093 0.94547 1.22481 1.01089 0.98356 0.93187 1.22177 0.95043 0.87774 0.97377 1.48860 1.37430 1.23163 1.26958 1.19994 0.77369 0.86152 0.82333 1.90703 1.50211 1.24545 1.73781 1.23502 1.05912 1.02400 0.97855 1.85386 1.40388 1.30732 1.27009 1.22901 1.24578 1.08747 1.11955 0.90871 1.25000 0.94782 0.96158 0.97700 1.70032 1.21010 1.25731 1.33532 0.86113 0.78162 0.80518 0.80681 1.19596 1.20573 1.20560 1.22282 0.99822 0.93917 0.84391 1.23044 0.99047 0.96845 0.88862 0.90795 0.91727 0.91037 0.77203 0.76716 0.89443 0.93974 0.90302 0.90568 0.90280 0.90017 0.90529 0.91533 0.89306 0.89323 0.92251 0.91303 0.89818 0.93109 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.05 37.16 0.34 -0.39 16 2 C 0.05 0.36 2.23 -68.86 -0.15 0.21 16 3 H 0.06 0.32 7.98 -51.93 -0.41 -0.10 16 4 C 0.52 4.30 6.61 -10.99 -0.07 4.23 16 5 N -0.86 -3.64 8.87 31.22 0.28 -3.36 16 6 O -0.52 -6.75 16.77 5.55 0.09 -6.66 16 7 N -0.49 -4.24 4.88 -223.63 -1.09 -5.33 16 8 C 0.03 0.29 5.76 -1.94 -0.01 0.28 16 9 C -0.11 -1.10 6.33 -25.83 -0.16 -1.26 16 10 C -0.08 -0.70 0.85 -153.92 -0.13 -0.83 16 11 C -0.11 -0.98 6.13 -25.88 -0.16 -1.14 16 12 C 0.10 1.08 6.77 -2.76 -0.02 1.06 16 13 N -0.63 -9.02 3.30 -170.08 -0.56 -9.58 16 14 C 0.55 10.75 7.91 -10.98 -0.09 10.67 16 15 O -0.52 -12.07 16.09 5.56 0.09 -11.98 16 16 C -0.15 -3.04 5.23 36.01 0.19 -2.85 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 19 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 22 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.12 1.37 5.79 -2.67 -0.02 1.36 16 27 C 0.05 0.37 4.47 -2.67 -0.01 0.36 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.31 6.98 -51.93 -0.36 -0.06 16 31 H 0.40 0.50 8.83 -40.82 -0.36 0.14 16 32 H 0.40 1.45 8.93 -40.82 -0.36 1.08 16 33 H 0.09 0.97 7.55 -51.93 -0.39 0.58 16 34 H 0.04 0.37 7.90 -51.93 -0.41 -0.04 16 35 H 0.08 0.85 7.32 -51.93 -0.38 0.47 16 36 H 0.08 0.89 7.53 -51.93 -0.39 0.50 16 37 H 0.08 0.56 7.43 -51.93 -0.39 0.18 16 38 H 0.08 0.73 7.39 -51.93 -0.38 0.34 16 39 H 0.08 0.84 7.55 -51.93 -0.39 0.45 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.73 7.91 -51.92 -0.41 1.32 16 42 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 45 H 0.08 1.09 7.49 -51.93 -0.39 0.70 16 46 H 0.05 0.34 7.73 -51.93 -0.40 -0.06 16 47 H 0.09 0.59 7.01 -51.93 -0.36 0.22 16 LS Contribution 389.00 15.07 5.86 5.86 Total: -1.00 -37.68 389.00 -9.39 -47.07 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.46 Total: -1.72 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -0.10 Total: -1.35 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.64 Total: -43.86 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.18 Total: -18.63 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.68 -9.39 -47.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671066125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.027 kcal (2) G-P(sol) polarization free energy of solvation -37.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds