Wall clock time and date at job start Wed Apr 1 2020 00:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47732 * 2 1 4 4 C 1.50695 * 109.46953 * 120.00893 * 2 1 3 5 5 N 1.34776 * 119.99852 * 272.99152 * 4 2 1 6 6 O 1.21284 * 120.00203 * 92.99973 * 4 2 1 7 7 N 1.46904 * 109.46623 * 240.00361 * 2 1 3 8 8 C 1.48677 * 110.99655 * 175.95760 * 7 2 1 9 9 C 1.54707 * 104.63654 * 201.60401 * 8 7 2 10 10 C 1.53010 * 104.57089 * 23.68093 * 9 8 7 11 11 C 1.53329 * 111.69899 * 237.54547 * 10 9 8 12 12 C 1.54298 * 104.70652 * 260.07443 * 11 10 9 13 13 N 1.47592 * 107.04980 * 2.06880 * 12 11 10 14 14 C 1.34782 * 126.93505 * 154.92678 * 13 12 11 15 15 O 1.21277 * 120.00050 * 180.02562 * 14 13 12 16 16 C 1.50703 * 119.99981 * 0.02723 * 14 13 12 17 17 S 1.80991 * 109.46947 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99882 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99991 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99995 * 179.97438 * 18 17 16 21 21 N 1.31638 * 120.00167 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00245 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46609 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47358 * 119.99922 * 22 20 18 25 25 H 1.48496 * 109.47113 * 240.00313 * 22 20 18 26 26 C 1.48354 * 106.12420 * 334.92873 * 13 12 11 27 27 C 1.48859 * 111.00202 * 60.28701 * 7 2 1 28 28 H 1.08998 * 109.47682 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46887 * 299.99821 * 1 2 3 30 30 H 1.09001 * 109.47116 * 59.98984 * 1 2 3 31 31 H 0.97003 * 119.99781 * 0.02562 * 5 4 2 32 32 H 0.97000 * 119.99980 * 179.97438 * 5 4 2 33 33 H 1.09004 * 110.40249 * 82.82187 * 8 7 2 34 34 H 1.08997 * 110.40901 * 320.39429 * 8 7 2 35 35 H 1.09003 * 110.41538 * 264.90618 * 9 8 7 36 36 H 1.09005 * 110.41542 * 142.45597 * 9 8 7 37 37 H 1.09003 * 110.39506 * 141.26870 * 11 10 9 38 38 H 1.09000 * 110.49065 * 18.92876 * 11 10 9 39 39 H 1.08998 * 109.91615 * 121.42508 * 12 11 10 40 40 H 1.09001 * 109.91918 * 242.71974 * 12 11 10 41 41 H 1.09003 * 109.46973 * 300.00149 * 16 14 13 42 42 H 1.09003 * 109.47330 * 59.99510 * 16 14 13 43 43 H 0.96996 * 119.99975 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.67800 * 279.44414 * 26 13 12 45 45 H 1.08999 * 110.82268 * 156.35515 * 26 13 12 46 46 H 1.09000 * 110.46748 * 39.26129 * 27 7 2 47 47 H 1.09001 * 110.46978 * 276.67322 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 7 2.1994 -0.0291 2.3810 6 8 2.2862 -1.8957 1.1850 7 7 2.0196 -0.6925 -1.1995 8 6 3.5025 -0.6281 -1.2839 9 6 3.8198 -0.8673 -2.7790 10 6 2.5422 -0.4568 -3.5141 11 6 1.9825 -1.6049 -4.3624 12 6 2.4497 -1.2939 -5.7997 13 7 3.2676 -0.0671 -5.7329 14 6 4.2338 0.3100 -6.5937 15 8 4.8310 1.3506 -6.4170 16 6 4.5719 -0.5615 -7.7758 17 16 5.8981 0.2111 -8.7351 18 6 6.0862 -0.9849 -10.0154 19 1 5.4653 -1.8685 -10.0244 20 6 7.0317 -0.7908 -11.0128 21 7 7.7875 0.2869 -11.0027 22 14 7.2307 -2.0583 -12.3705 23 1 6.2679 -3.1684 -12.1563 24 1 6.9661 -1.4210 -13.6855 25 1 8.6160 -2.5929 -12.3494 26 6 2.8117 0.6669 -4.5270 27 6 1.5479 -0.0134 -2.4374 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 1.9961 0.9187 2.4173 32 1 2.5224 -0.4866 3.1731 33 1 3.9523 -1.4089 -0.6704 34 1 3.8587 0.3537 -0.9722 35 1 4.0397 -1.9200 -2.9574 36 1 4.6569 -0.2445 -3.0945 37 1 0.8937 -1.6188 -4.3117 38 1 2.3897 -2.5594 -4.0290 39 1 3.0494 -2.1198 -6.1821 40 1 1.5857 -1.1295 -6.4436 41 1 4.8997 -1.5397 -7.4241 42 1 3.6896 -0.6787 -8.4051 43 1 8.4485 0.4223 -11.6995 44 1 1.8980 1.2228 -4.7374 45 1 3.5918 1.3351 -4.1621 46 1 1.5779 1.0691 -2.3134 47 1 0.5398 -0.3410 -2.6914 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671066125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:49 Heat of formation + Delta-G solvation = -90.533797 kcal Electronic energy + Delta-G solvation = -27580.615297 eV Core-core repulsion = 23695.221064 eV Total energy + Delta-G solvation = -3885.394233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77333 -40.72662 -39.61669 -37.52609 -34.89204 -34.59890 -34.09385 -32.15982 -30.83756 -29.98446 -29.62240 -27.72449 -26.59764 -24.85043 -23.64645 -22.88075 -21.02185 -20.64521 -20.29532 -19.48965 -18.35708 -18.03605 -18.02549 -17.10249 -16.90152 -16.78153 -16.26295 -16.08220 -15.89288 -15.69158 -15.41850 -14.96908 -14.79923 -14.56333 -14.37114 -14.07765 -13.82132 -13.73193 -13.48979 -13.26004 -13.22748 -13.13018 -12.92391 -12.81946 -12.61560 -12.54081 -12.32583 -12.12773 -11.91797 -11.70091 -11.55319 -11.47190 -11.16924 -10.96569 -10.82097 -10.63038 -10.29679 -9.71812 -9.45036 -8.69154 -8.36071 -6.14637 1.23086 1.40759 1.44036 1.56064 1.56476 1.63739 2.07579 2.26023 2.43519 2.95461 2.98023 3.22406 3.41956 3.46419 3.56420 3.86827 3.91706 4.03887 4.10038 4.15452 4.18191 4.20873 4.24976 4.31944 4.44174 4.55278 4.59989 4.68393 4.70499 4.71532 4.80309 4.86985 4.89318 4.98761 5.01626 5.10331 5.17821 5.22686 5.28780 5.40510 5.40941 5.75861 5.84139 5.97460 6.18825 6.42270 6.51114 7.05132 7.10982 7.38451 8.73491 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029258 B = 0.001979 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.764328 B =14144.111724 C =14170.265130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.052 3.948 3 H 0.085 0.915 4 C 0.515 3.485 5 N -0.840 5.840 6 O -0.576 6.576 7 N -0.500 5.500 8 C 0.038 3.962 9 C -0.108 4.108 10 C -0.068 4.068 11 C -0.104 4.104 12 C 0.092 3.908 13 N -0.619 5.619 14 C 0.550 3.450 15 O -0.568 6.568 16 C -0.120 4.120 17 S -0.150 6.150 18 C -0.545 4.545 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.257 1.257 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.117 3.883 27 C 0.056 3.944 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.417 0.583 32 H 0.406 0.594 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.271 0.729 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.247 -0.764 25.980 32.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.060 4.060 3 H 0.103 0.897 4 C 0.300 3.700 5 N -0.405 5.405 6 O -0.454 6.454 7 N -0.225 5.225 8 C -0.089 4.089 9 C -0.146 4.146 10 C -0.070 4.070 11 C -0.142 4.142 12 C -0.031 4.031 13 N -0.354 5.354 14 C 0.339 3.661 15 O -0.447 6.447 16 C -0.271 4.271 17 S 0.077 5.923 18 C -0.693 4.693 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.821 3.179 23 H -0.180 1.180 24 H -0.198 1.198 25 H -0.199 1.199 26 C -0.005 4.005 27 C -0.071 4.071 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.248 0.752 32 H 0.238 0.762 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.112 0.888 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.275 -0.405 25.947 32.326 hybrid contribution 0.548 -0.568 -0.686 1.046 sum -18.728 -0.973 25.261 31.461 Atomic orbital electron populations 1.21780 0.89960 1.03186 1.04485 1.21915 0.98940 0.96425 0.88751 0.89705 1.20850 0.76313 0.86994 0.85862 1.43781 1.69373 1.14942 1.12368 1.90749 1.51537 1.17639 1.85442 1.65361 1.06450 1.49686 1.00994 1.23111 0.88980 1.00189 0.96665 1.22219 0.96661 1.01823 0.93927 1.21415 0.95632 0.95408 0.94517 1.22484 1.02701 0.97829 0.91169 1.22509 0.95061 0.86009 0.99474 1.48794 1.35768 1.24455 1.26334 1.19677 0.78304 0.85374 0.82760 1.90680 1.52485 1.26489 1.75085 1.23299 1.03602 1.02365 0.97829 1.85553 1.44444 1.33254 1.29032 1.23220 1.25029 1.08861 1.12187 0.89988 1.26148 0.94128 0.98448 1.00478 1.70192 1.21817 1.28008 1.34728 0.84890 0.78505 0.77645 0.76812 1.18032 1.19792 1.19899 1.22511 0.99980 0.94460 0.83585 1.23071 0.99046 0.97654 0.87358 0.92629 0.89736 0.89562 0.75182 0.76222 0.91560 0.93321 0.91166 0.92664 0.87449 0.90117 0.90742 0.89404 0.87924 0.87592 0.91954 0.88844 0.91753 0.91675 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.05 71.98 0.65 -0.32 16 2 C 0.05 0.57 2.23 44.17 0.10 0.67 16 3 H 0.09 0.57 7.98 -2.39 -0.02 0.55 16 4 C 0.52 7.91 6.61 87.66 0.58 8.49 16 5 N -0.84 -5.62 8.87 -173.53 -1.54 -7.16 16 6 O -0.58 -15.06 16.77 -3.04 -0.05 -15.11 16 7 N -0.50 -7.77 4.88 -861.44 -4.21 -11.98 16 8 C 0.04 0.72 5.76 86.54 0.50 1.22 16 9 C -0.11 -2.21 6.33 31.18 0.20 -2.01 16 10 C -0.07 -1.11 0.85 -51.80 -0.04 -1.16 16 11 C -0.10 -1.49 6.13 31.14 0.19 -1.30 16 12 C 0.09 1.75 6.77 86.61 0.59 2.33 16 13 N -0.62 -17.08 3.30 -810.41 -2.68 -19.76 16 14 C 0.55 21.60 7.91 87.66 0.69 22.30 16 15 O -0.57 -27.47 16.09 -3.02 -0.05 -27.52 16 16 C -0.12 -5.00 5.23 71.24 0.37 -4.63 16 17 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 18 C -0.55 -31.63 9.50 67.95 0.65 -30.99 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.73 5.49 84.86 0.47 1.20 16 21 N -0.91 -56.49 13.22 21.65 0.29 -56.21 16 22 Si 1.00 44.07 29.55 68.60 2.03 46.10 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 C 0.12 2.51 5.79 86.25 0.50 3.01 16 27 C 0.06 0.65 4.47 85.96 0.38 1.03 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.09 0.37 6.98 -2.39 -0.02 0.36 16 31 H 0.42 -0.07 8.83 -92.71 -0.82 -0.89 16 32 H 0.41 2.39 8.93 -92.71 -0.83 1.56 16 33 H 0.07 1.52 7.55 -2.38 -0.02 1.51 16 34 H 0.05 0.82 7.90 -2.39 -0.02 0.80 16 35 H 0.07 1.53 7.32 -2.39 -0.02 1.51 16 36 H 0.05 1.35 7.53 -2.38 -0.02 1.33 16 37 H 0.11 1.01 7.43 -2.39 -0.02 1.00 16 38 H 0.08 1.24 7.39 -2.39 -0.02 1.22 16 39 H 0.07 1.48 7.55 -2.39 -0.02 1.46 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.10 3.96 7.91 -2.39 -0.02 3.94 16 42 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 43 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.09 1.60 8.07 -2.38 -0.02 1.59 16 45 H 0.06 1.66 7.49 -2.39 -0.02 1.64 16 46 H 0.07 0.60 7.73 -2.39 -0.02 0.58 16 47 H 0.11 0.91 7.01 -2.39 -0.02 0.89 16 Total: -1.00 -86.60 389.00 -2.20 -88.80 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -0.65 Total: 12.70 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 5.82 Total: -0.17 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -8.14 Total: -95.10 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -0.10 Total: -42.63 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -86.60 -2.20 -88.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671066125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.734 kcal (2) G-P(sol) polarization free energy of solvation -86.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds