Wall clock time and date at job start Wed Apr 1 2020 00:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47787 * 2 1 4 4 N 1.46501 * 109.47376 * 120.00660 * 2 1 3 5 5 C 1.36935 * 119.99973 * 274.72136 * 4 2 1 6 6 H 1.08004 * 119.99628 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00130 * 179.97438 * 5 4 2 8 8 N 1.31627 * 120.00270 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00092 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47259 * 90.00099 * 9 7 5 11 11 H 1.48509 * 109.47155 * 210.00085 * 9 7 5 12 12 H 1.48496 * 109.47190 * 329.99928 * 9 7 5 13 13 C 1.53009 * 109.46845 * 240.00454 * 2 1 3 14 14 H 1.08999 * 110.88402 * 299.29732 * 13 2 1 15 15 C 1.55149 * 111.00306 * 63.18048 * 13 2 1 16 16 C 1.54324 * 102.94097 * 153.57750 * 15 13 2 17 17 N 1.47018 * 107.27300 * 337.80482 * 16 15 13 18 18 C 1.34772 * 125.64953 * 178.97435 * 17 16 15 19 19 O 1.21553 * 120.00059 * 175.01078 * 18 17 16 20 20 C 1.47846 * 120.00339 * 355.01627 * 18 17 16 21 21 C 1.40596 * 120.28290 * 187.81189 * 20 18 17 22 22 N 1.30819 * 121.52091 * 179.97438 * 21 20 18 23 23 C 1.33753 * 121.79789 * 0.02562 * 22 21 20 24 24 N 1.33889 * 120.62296 * 180.02562 * 23 22 21 25 25 C 1.31333 * 119.85005 * 179.97438 * 24 23 22 26 26 C 1.39759 * 120.77347 * 0.02562 * 25 24 23 27 27 N 1.31307 * 120.55608 * 359.95598 * 26 25 24 28 28 C 1.33665 * 119.70285 * 0.03638 * 27 26 25 29 29 C 1.38908 * 120.27553 * 7.54046 * 20 18 17 30 30 C 1.47468 * 108.72255 * 358.97577 * 17 16 15 31 31 H 1.08997 * 109.47349 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46460 * 299.99470 * 1 2 3 33 33 H 1.08993 * 109.47002 * 59.99361 * 1 2 3 34 34 H 0.97003 * 120.00080 * 95.00020 * 4 2 1 35 35 H 0.96994 * 120.00080 * 180.02562 * 8 7 5 36 36 H 1.09009 * 110.72220 * 271.93773 * 15 13 2 37 37 H 1.09003 * 110.72368 * 35.03600 * 15 13 2 38 38 H 1.08997 * 109.88513 * 97.22412 * 16 15 13 39 39 H 1.09008 * 109.88127 * 218.23123 * 16 15 13 40 40 H 1.07999 * 119.23997 * 359.97438 * 21 20 18 41 41 H 1.08003 * 119.60923 * 179.97438 * 25 24 23 42 42 H 1.07998 * 119.71959 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.99569 * 359.97438 * 29 20 18 44 44 H 1.09001 * 110.34892 * 265.25500 * 30 17 16 45 45 H 1.08999 * 110.40557 * 142.91384 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1546 -0.0064 2.3743 6 1 1.9024 1.0427 2.4216 7 6 2.6169 -0.6609 3.5077 8 7 2.7473 -0.0032 4.6404 9 14 3.0524 -2.4756 3.4260 10 1 4.4836 -2.6251 3.0591 11 1 2.8129 -3.1023 4.7508 12 1 2.2070 -3.1420 2.4031 13 6 2.0400 -0.7212 -1.2494 14 1 1.6996 -1.7566 -1.2665 15 6 1.6092 0.0273 -2.5383 16 6 2.7008 -0.3745 -3.5525 17 7 3.8814 -0.7902 -2.7813 18 6 5.0432 -1.2331 -3.3012 19 8 5.9868 -1.4647 -2.5708 20 6 5.1702 -1.4370 -4.7600 21 6 6.3173 -2.0511 -5.2929 22 7 6.4547 -2.2440 -6.5794 23 6 5.5142 -1.8677 -7.4529 24 7 5.6791 -2.0770 -8.7650 25 6 4.7457 -1.7019 -9.6092 26 6 3.5773 -1.0837 -9.1551 27 7 3.3914 -0.8674 -7.8734 28 6 4.3280 -1.2410 -6.9960 29 6 4.1548 -1.0284 -5.6153 30 6 3.5842 -0.6427 -1.3444 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 2.2491 -1.6319 1.1524 35 1 3.0707 -0.4605 5.4323 36 1 0.6287 -0.3125 -2.8722 37 1 1.6075 1.1052 -2.3761 38 1 2.3489 -1.2030 -4.1671 39 1 2.9498 0.4771 -4.1858 40 1 7.1030 -2.3710 -4.6246 41 1 4.8829 -1.8723 -10.6668 42 1 2.8210 -0.7818 -9.8644 43 1 3.2608 -0.5584 -5.2327 44 1 3.9380 0.3222 -0.9813 45 1 4.0409 -1.4534 -0.7767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672210930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:49 Heat of formation + Delta-G solvation = 95.876385 kcal Electronic energy + Delta-G solvation = -28880.777667 eV Core-core repulsion = 24900.315586 eV Total energy + Delta-G solvation = -3980.462081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23090 -40.55012 -38.75375 -37.79841 -35.83715 -35.36296 -33.09302 -32.20291 -31.65606 -30.84197 -29.21928 -28.54467 -26.69157 -25.64084 -24.10196 -23.85867 -23.14199 -21.52663 -20.91486 -19.97567 -19.72950 -18.59545 -17.75388 -17.61185 -17.03694 -16.29219 -16.06121 -15.78612 -15.67204 -15.17555 -14.98231 -14.42816 -14.29957 -13.95429 -13.71684 -13.48767 -13.28567 -13.03978 -12.90214 -12.63468 -12.45181 -12.35536 -12.27912 -12.27332 -11.81976 -11.57413 -11.21857 -11.05795 -10.95066 -10.71974 -10.66404 -10.35421 -10.23213 -10.00824 -9.86361 -9.68912 -9.60242 -9.25008 -8.96814 -8.84251 -7.31333 -5.78787 -3.15135 -0.63911 -0.27787 1.18511 1.90007 2.60142 2.79846 3.00384 3.32020 3.37325 3.40586 3.46354 3.49532 3.50258 3.98719 4.05739 4.12635 4.31543 4.36606 4.51367 4.58010 4.62238 4.68504 4.75666 4.84988 5.00202 5.10203 5.20369 5.35715 5.37275 5.48856 5.56816 5.66570 5.71321 5.81294 5.82899 5.98152 6.02088 6.09689 6.20969 6.29874 6.38638 6.39636 6.70372 6.88211 6.92128 7.22325 7.40026 7.83775 7.95785 8.39845 9.17597 9.90309 10.08809 11.39373 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020463 B = 0.002479 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.023194 B =11292.990980 C =12303.006060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.190 3.810 3 H 0.059 0.941 4 N -0.749 5.749 5 C -0.243 4.243 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.107 4.107 14 H 0.082 0.918 15 C -0.124 4.124 16 C 0.083 3.917 17 N -0.608 5.608 18 C 0.574 3.426 19 O -0.521 6.521 20 C -0.165 4.165 21 C 0.216 3.784 22 N -0.458 5.458 23 C 0.270 3.730 24 N -0.419 5.419 25 C 0.112 3.888 26 C 0.072 3.928 27 N -0.405 5.405 28 C 0.018 3.982 29 C -0.027 4.027 30 C 0.118 3.882 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.188 0.812 41 H 0.185 0.815 42 H 0.184 0.816 43 H 0.190 0.810 44 H 0.081 0.919 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 -1.315 -30.603 30.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.080 3.920 3 H 0.077 0.923 4 N -0.391 5.391 5 C -0.373 4.373 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.580 5.580 9 Si 0.712 3.288 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.101 0.899 15 C -0.162 4.162 16 C -0.039 4.039 17 N -0.341 5.341 18 C 0.361 3.639 19 O -0.398 6.398 20 C -0.172 4.172 21 C 0.038 3.962 22 N -0.167 5.167 23 C 0.031 3.969 24 N -0.134 5.134 25 C -0.067 4.067 26 C -0.105 4.105 27 N -0.120 5.120 28 C -0.108 4.108 29 C -0.054 4.054 30 C -0.003 4.003 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.204 0.796 41 H 0.202 0.798 42 H 0.201 0.799 43 H 0.206 0.794 44 H 0.100 0.900 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.394 -1.705 -30.225 30.275 hybrid contribution -0.490 -0.967 0.201 1.103 sum -0.884 -2.673 -30.024 30.155 Atomic orbital electron populations 1.22414 0.98493 1.00956 1.00615 1.20126 0.92161 0.95468 0.84208 0.92269 1.42790 1.79815 1.09314 1.07229 1.19018 1.37212 0.95360 0.85720 0.89181 1.24659 1.01317 0.97397 0.95581 1.69696 1.52428 1.35559 1.00353 0.86605 0.78609 0.86820 0.76802 1.20912 1.21797 1.20382 1.22755 0.93719 1.00732 0.95510 0.89937 1.22734 0.97541 1.01842 0.94128 1.22612 0.86546 0.99300 0.95464 1.48483 1.12689 1.63673 1.09277 1.17451 0.82053 0.78081 0.86269 1.90856 1.36992 1.51330 1.60578 1.21220 0.97072 1.03836 0.95091 1.23396 0.94672 0.87910 0.90213 1.67626 1.28303 1.18301 1.02452 1.20195 0.90152 0.94684 0.91902 1.68349 1.29199 1.14816 1.01000 1.24359 0.89347 0.91790 1.01239 1.24244 0.97935 0.95351 0.92963 1.68596 1.27511 1.13028 1.02874 1.20234 0.93718 1.01454 0.95400 1.23405 0.99637 0.92231 0.90092 1.22411 0.95630 1.03573 0.78731 0.93602 0.92204 0.94018 0.80671 0.93042 0.89509 0.89668 0.90521 0.90334 0.79554 0.79813 0.79887 0.79417 0.90041 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.31 37.16 0.35 -2.16 16 2 C 0.19 3.17 2.40 -67.93 -0.16 3.00 16 3 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 4 N -0.75 -16.39 4.70 -53.42 -0.25 -16.65 16 5 C -0.24 -6.55 10.41 -15.06 -0.16 -6.71 16 6 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -28.91 13.97 55.49 0.78 -28.13 16 9 Si 0.88 21.92 27.73 -169.99 -4.71 17.21 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 13 C -0.11 -1.39 2.64 -88.47 -0.23 -1.63 16 14 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.12 -1.12 5.44 -24.90 -0.14 -1.25 16 16 C 0.08 0.71 4.87 -3.07 -0.01 0.70 16 17 N -0.61 -7.47 3.33 -173.23 -0.58 -8.04 16 18 C 0.57 7.76 7.81 -12.33 -0.10 7.66 16 19 O -0.52 -8.88 16.67 5.32 0.09 -8.79 16 20 C -0.16 -1.84 5.88 -104.83 -0.62 -2.46 16 21 C 0.22 2.45 10.73 -17.09 -0.18 2.26 16 22 N -0.46 -5.80 10.39 -12.28 -0.13 -5.93 16 23 C 0.27 3.21 7.60 -157.61 -1.20 2.01 16 24 N -0.42 -4.39 10.55 -12.39 -0.13 -4.52 16 25 C 0.11 0.64 11.21 -17.20 -0.19 0.45 16 26 C 0.07 0.37 11.22 -17.21 -0.19 0.18 16 27 N -0.41 -3.47 10.46 -10.77 -0.11 -3.58 16 28 C 0.02 0.19 6.59 -84.78 -0.56 -0.37 16 29 C -0.03 -0.26 8.67 -38.38 -0.33 -0.59 16 30 C 0.12 1.71 6.15 -2.50 -0.02 1.70 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.04 0.49 7.38 -51.93 -0.38 0.11 16 34 H 0.36 7.92 5.66 -40.82 -0.23 7.69 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 36 H 0.09 0.64 8.12 -51.92 -0.42 0.21 16 37 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 38 H 0.08 0.55 6.67 -51.93 -0.35 0.20 16 39 H 0.08 0.54 6.80 -51.92 -0.35 0.19 16 40 H 0.19 1.88 7.65 -52.49 -0.40 1.48 16 41 H 0.18 0.22 8.06 -52.48 -0.42 -0.21 16 42 H 0.18 0.14 8.06 -52.49 -0.42 -0.28 16 43 H 0.19 1.44 2.88 -54.62 -0.16 1.28 16 44 H 0.08 1.27 8.03 -51.93 -0.42 0.86 16 45 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -36.22 369.26 -9.00 -45.21 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.67 Total: 4.77 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -3.84 Total: 2.87 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -0.42 Total: -66.84 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.22 -9.00 -45.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672210930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.090 kcal (2) G-P(sol) polarization free energy of solvation -36.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds