Wall clock time and date at job start Wed Apr 1 2020 00:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46979 * 2 1 4 4 N 1.46503 * 109.46999 * 240.00615 * 2 1 3 5 5 C 1.36940 * 120.00093 * 84.99581 * 4 2 1 6 6 H 1.07997 * 120.00025 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99942 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99929 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99870 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47352 * 59.99676 * 9 7 5 11 11 H 1.48496 * 109.47358 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47213 * 299.99670 * 9 7 5 13 13 C 1.52995 * 109.47507 * 120.00458 * 2 1 3 14 14 H 1.08994 * 110.91707 * 63.90471 * 13 2 1 15 15 C 1.55159 * 111.00500 * 299.99782 * 13 2 1 16 16 C 1.54323 * 103.10377 * 206.33864 * 15 13 2 17 17 N 1.47490 * 107.03474 * 22.23656 * 16 15 13 18 18 C 1.34771 * 125.58972 * 181.07427 * 17 16 15 19 19 O 1.21551 * 119.99832 * 174.32175 * 18 17 16 20 20 C 1.47850 * 120.00166 * 354.31774 * 18 17 16 21 21 C 1.40599 * 120.27467 * 186.80105 * 20 18 17 22 22 N 1.30823 * 121.51337 * 179.75885 * 21 20 18 23 23 C 1.33752 * 121.79593 * 0.50873 * 22 21 20 24 24 N 1.33891 * 120.61704 * 179.74106 * 23 22 21 25 25 C 1.31336 * 119.84948 * 180.02562 * 24 23 22 26 26 C 1.39758 * 120.77271 * 359.97438 * 25 24 23 27 27 N 1.31306 * 120.55633 * 0.02562 * 26 25 24 28 28 C 1.33664 * 119.70430 * 359.95981 * 27 26 25 29 29 C 1.38902 * 120.27586 * 7.07611 * 20 18 17 30 30 C 1.47426 * 108.75816 * 1.03221 * 17 16 15 31 31 H 1.08990 * 109.47601 * 59.99562 * 1 2 3 32 32 H 1.08999 * 109.46979 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46476 * 299.99123 * 1 2 3 34 34 H 0.97001 * 120.00012 * 265.00112 * 4 2 1 35 35 H 0.97003 * 119.99368 * 180.02562 * 8 7 5 36 36 H 1.08997 * 110.71830 * 324.78734 * 15 13 2 37 37 H 1.08997 * 110.71766 * 87.87983 * 15 13 2 38 38 H 1.08997 * 109.88148 * 141.70274 * 16 15 13 39 39 H 1.09009 * 109.87872 * 262.86429 * 16 15 13 40 40 H 1.07993 * 119.24362 * 0.02562 * 21 20 18 41 41 H 1.08000 * 119.61145 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.71955 * 180.02562 * 26 25 24 43 43 H 1.07995 * 120.99648 * 359.95421 * 29 20 18 44 44 H 1.08999 * 110.36214 * 217.04937 * 30 17 16 45 45 H 1.08996 * 110.45759 * 94.77801 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1490 -0.0073 -2.3758 6 1 1.8917 1.0405 -2.4244 7 6 2.6112 -0.6617 -3.5094 8 7 2.9243 -1.9387 -3.4504 9 14 2.7901 0.2705 -5.1183 10 1 3.7461 1.3923 -4.9367 11 1 3.2990 -0.6478 -6.1685 12 1 1.4681 0.8083 -5.5285 13 6 2.0401 -0.7213 1.2491 14 1 1.7476 -1.7712 1.2389 15 6 1.5427 -0.0179 2.5396 16 6 2.6219 -0.3890 3.5784 17 7 3.8429 -0.7366 2.8277 18 6 5.0097 -1.1376 3.3701 19 8 5.9217 -1.4981 2.6519 20 6 5.1805 -1.1389 4.8387 21 6 6.4363 -1.4180 5.4060 22 7 6.6157 -1.4211 6.7019 23 6 5.6148 -1.1695 7.5526 24 7 5.8239 -1.1838 8.8750 25 6 4.8300 -0.9351 9.6967 26 6 3.5513 -0.6538 9.2078 27 7 3.3203 -0.6337 7.9153 28 6 4.3169 -0.8835 7.0604 29 6 4.1003 -0.8700 5.6696 30 6 3.5760 -0.5741 1.3869 31 1 -0.3634 0.5138 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5137 0.8901 34 1 2.2490 -1.6317 -1.1528 35 1 3.2476 -2.3959 -4.2425 36 1 1.4991 1.0619 2.3978 37 1 0.5692 -0.4057 2.8394 38 1 2.8149 0.4614 4.2324 39 1 2.2909 -1.2445 4.1673 40 1 7.2729 -1.6306 4.7571 41 1 5.0028 -0.9481 10.7627 42 1 2.7464 -0.4513 9.8988 43 1 3.1239 -0.6560 5.2607 44 1 4.0843 -1.3518 0.8170 45 1 3.8945 0.4121 1.0494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672210931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:52 Heat of formation + Delta-G solvation = 92.325252 kcal Electronic energy + Delta-G solvation = -28764.308876 eV Core-core repulsion = 24783.692806 eV Total energy + Delta-G solvation = -3980.616070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.18024 -40.44602 -38.66834 -37.69497 -35.72817 -35.23205 -33.04374 -32.16647 -31.60429 -30.60657 -28.91158 -28.20736 -26.63177 -25.58096 -24.15995 -23.79927 -23.16963 -21.65115 -20.83557 -19.78351 -19.61316 -18.53268 -17.67988 -17.26483 -16.84295 -16.29208 -15.98174 -15.69777 -15.56225 -15.07619 -14.96471 -14.44227 -14.11148 -13.91666 -13.63937 -13.34220 -13.20044 -13.08547 -12.78220 -12.72143 -12.32908 -12.26026 -12.19513 -12.12979 -11.47698 -11.41108 -11.15894 -10.91196 -10.85423 -10.65350 -10.61139 -10.27027 -10.19445 -9.92850 -9.81217 -9.65054 -9.63920 -9.20171 -8.92935 -8.74252 -6.98936 -5.77298 -3.06767 -0.58928 -0.23089 1.23456 1.95340 2.68917 2.87400 3.05060 3.36757 3.43603 3.48297 3.49431 3.54206 3.55427 4.04714 4.11022 4.18251 4.36652 4.46241 4.54667 4.58544 4.72923 4.75760 4.85671 4.90600 5.10439 5.23139 5.28012 5.41966 5.50218 5.55876 5.77701 5.81321 5.82571 5.88686 5.91480 6.09420 6.15298 6.24503 6.33820 6.43335 6.45778 6.57092 6.80154 6.92715 7.02161 7.31634 7.44906 7.68264 7.93093 8.40581 9.52013 10.08023 10.42279 11.44996 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022782 B = 0.002281 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.734658 B =12273.988256 C =13266.105353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.724 5.724 5 C -0.240 4.240 6 H 0.069 0.931 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.287 1.287 13 C -0.101 4.101 14 H 0.084 0.916 15 C -0.126 4.126 16 C 0.083 3.917 17 N -0.608 5.608 18 C 0.574 3.426 19 O -0.520 6.520 20 C -0.164 4.164 21 C 0.216 3.784 22 N -0.459 5.459 23 C 0.270 3.730 24 N -0.419 5.419 25 C 0.111 3.889 26 C 0.071 3.929 27 N -0.405 5.405 28 C 0.018 3.982 29 C -0.028 4.028 30 C 0.119 3.881 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.038 0.962 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.188 0.812 41 H 0.185 0.815 42 H 0.184 0.816 43 H 0.190 0.810 44 H 0.090 0.910 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.164 3.510 27.716 28.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.365 5.365 5 C -0.371 4.371 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.102 0.898 15 C -0.164 4.164 16 C -0.039 4.039 17 N -0.341 5.341 18 C 0.361 3.639 19 O -0.397 6.397 20 C -0.171 4.171 21 C 0.038 3.962 22 N -0.167 5.167 23 C 0.030 3.970 24 N -0.134 5.134 25 C -0.068 4.068 26 C -0.106 4.106 27 N -0.120 5.120 28 C -0.108 4.108 29 C -0.055 4.055 30 C -0.002 4.002 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.218 0.782 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.205 0.795 41 H 0.201 0.799 42 H 0.201 0.799 43 H 0.206 0.794 44 H 0.108 0.892 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.668 3.210 27.410 27.605 hybrid contribution -0.728 0.318 -1.042 1.310 sum -1.396 3.528 26.368 26.640 Atomic orbital electron populations 1.22452 0.99037 1.00939 1.00046 1.20141 0.91965 0.95153 0.85275 0.93246 1.42413 1.78191 1.10709 1.05234 1.19139 1.36929 0.93799 0.87278 0.91278 1.24735 1.02049 0.95948 0.98048 1.69645 1.50578 1.08638 1.29022 0.86299 0.77719 0.78651 0.83671 1.21272 1.21734 1.21342 1.22692 0.93459 1.00950 0.95055 0.89803 1.22746 0.97478 1.01942 0.94240 1.22689 0.85714 0.99768 0.95727 1.48596 1.10659 1.65446 1.09443 1.17444 0.81975 0.78325 0.86180 1.90856 1.40016 1.47080 1.61768 1.21248 0.95779 1.04936 0.95168 1.23405 0.95912 0.87038 0.89817 1.67628 1.31617 1.14323 1.03161 1.20194 0.88968 0.96039 0.91778 1.68347 1.33380 1.10053 1.01596 1.24348 0.89086 0.91874 1.01497 1.24235 0.98090 0.95614 0.92615 1.68592 1.31795 1.08069 1.03551 1.20236 0.91972 1.03152 0.95423 1.23427 1.01933 0.89822 0.90295 1.22390 0.96272 1.03218 0.78345 0.92727 0.93478 0.94348 0.78238 0.93430 0.89962 0.89618 0.90494 0.90421 0.79527 0.79852 0.79924 0.79381 0.89177 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.27 37.16 0.34 -2.29 16 2 C 0.19 3.25 2.43 -67.93 -0.16 3.09 16 3 H 0.05 0.89 8.01 -51.93 -0.42 0.47 16 4 N -0.72 -16.95 4.97 -53.43 -0.27 -17.22 16 5 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 6 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 9 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 C -0.10 -1.43 2.66 -88.47 -0.23 -1.67 16 14 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 15 C -0.13 -1.24 5.28 -24.90 -0.13 -1.37 16 16 C 0.08 0.77 4.89 -2.81 -0.01 0.76 16 17 N -0.61 -7.94 3.34 -173.42 -0.58 -8.52 16 18 C 0.57 8.14 7.81 -12.33 -0.10 8.04 16 19 O -0.52 -9.26 16.60 5.32 0.09 -9.17 16 20 C -0.16 -1.92 5.88 -104.83 -0.62 -2.53 16 21 C 0.22 2.54 10.73 -17.09 -0.18 2.36 16 22 N -0.46 -5.97 10.39 -12.28 -0.13 -6.10 16 23 C 0.27 3.30 7.60 -157.61 -1.20 2.10 16 24 N -0.42 -4.52 10.55 -12.39 -0.13 -4.65 16 25 C 0.11 0.67 11.21 -17.20 -0.19 0.47 16 26 C 0.07 0.39 11.22 -17.21 -0.19 0.20 16 27 N -0.41 -3.61 10.46 -10.77 -0.11 -3.73 16 28 C 0.02 0.20 6.59 -84.78 -0.56 -0.36 16 29 C -0.03 -0.28 8.69 -38.38 -0.33 -0.62 16 30 C 0.12 1.84 6.26 -2.53 -0.02 1.83 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.48 7.27 -51.93 -0.38 0.10 16 34 H 0.38 9.71 7.80 -40.82 -0.32 9.40 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 37 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 38 H 0.08 0.59 6.75 -51.93 -0.35 0.24 16 39 H 0.08 0.61 6.75 -51.92 -0.35 0.26 16 40 H 0.19 1.96 7.65 -52.49 -0.40 1.56 16 41 H 0.18 0.27 8.06 -52.49 -0.42 -0.16 16 42 H 0.18 0.19 8.06 -52.49 -0.42 -0.23 16 43 H 0.19 1.55 2.84 -55.32 -0.16 1.39 16 44 H 0.09 1.68 7.98 -51.93 -0.41 1.26 16 45 H 0.08 1.24 7.98 -51.93 -0.41 0.83 16 LS Contribution 372.05 15.07 5.61 5.61 Total: -1.00 -35.12 372.05 -9.35 -44.47 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.70 Total: 6.13 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -3.83 Total: 3.05 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -0.49 Total: -67.20 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.12 -9.35 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672210931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.793 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds